Wall clock time and date at job start Tue Mar 31 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99859 * 2 1 4 4 H 1.48497 * 109.47476 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46864 * 300.00050 * 3 2 1 6 6 H 1.48496 * 109.47471 * 59.99687 * 3 2 1 7 7 C 1.37874 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00268 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47257 * 179.97438 * 9 7 2 11 11 C 1.39112 * 119.99985 * 179.97438 * 10 9 7 12 12 N 1.32384 * 119.69752 * 0.02562 * 11 10 9 13 13 C 1.31967 * 121.64971 * 179.97438 * 12 11 10 14 14 C 1.38165 * 120.84908 * 0.02562 * 13 12 11 15 15 Cl 1.73601 * 120.34090 * 180.02562 * 14 13 12 16 16 C 1.38927 * 119.31101 * 0.02562 * 14 13 12 17 17 C 1.38410 * 118.48762 * 359.97438 * 16 14 13 18 18 Br 1.89097 * 120.44956 * 179.97438 * 17 16 14 19 19 H 0.96993 * 120.00287 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46974 * 59.99543 * 9 7 2 21 21 H 1.08998 * 109.47225 * 299.99816 * 9 7 2 22 22 H 0.96993 * 119.99984 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.57356 * 180.28213 * 13 12 11 24 24 H 1.08003 * 120.75465 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7395 -4.9242 0.0011 12 7 0.4367 -5.1593 0.0011 13 6 -0.0453 -6.3878 0.0011 14 6 0.8001 -7.4806 0.0016 15 17 0.1518 -9.0910 0.0009 16 6 2.1745 -7.2772 0.0027 17 6 2.6494 -5.9771 0.0027 18 35 4.5094 -5.6364 0.0048 19 1 -0.4850 0.8400 0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6241 -2.5568 0.8903 22 1 3.1567 -3.4354 0.0009 23 1 -1.1144 -6.5409 -0.0036 24 1 2.8567 -8.1145 0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306761787.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:35 Heat of formation + Delta-G solvation = 26.672288 kcal Electronic energy + Delta-G solvation = -12840.610462 eV Core-core repulsion = 10246.846011 eV Total energy + Delta-G solvation = -2593.764450 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.952 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.03078 -36.57348 -35.26621 -33.01671 -32.69385 -30.45978 -29.05639 -26.70076 -23.76847 -22.66032 -21.54406 -17.95619 -16.68423 -16.32956 -15.81542 -14.74508 -14.60633 -14.21054 -13.52718 -12.99888 -12.79296 -12.45796 -12.13471 -11.82125 -11.18369 -11.15548 -10.97868 -10.92903 -10.33520 -10.20556 -9.64999 -9.43562 -9.28090 -9.22713 -8.60328 -7.16436 -6.23292 -4.30157 1.13889 1.42918 1.68180 2.31512 3.20545 3.28062 3.31295 3.79499 3.89455 4.29703 4.74750 4.84639 5.13628 5.15600 5.34432 5.69899 5.94049 6.36873 7.06929 7.41337 7.48622 7.64874 7.86999 8.10066 8.52107 8.81324 9.35926 10.86747 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.005475 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.513381 B = 5112.674328 C = 6459.044515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.253 3.747 10 N -0.681 5.681 11 C 0.439 3.561 12 N -0.512 5.512 13 C 0.192 3.808 14 C -0.176 4.176 15 Cl -0.073 7.073 16 C 0.011 3.989 17 C -0.225 4.225 18 Br -0.043 7.043 19 H 0.266 0.734 20 H 0.032 0.968 21 H 0.032 0.968 22 H 0.406 0.594 23 H 0.165 0.835 24 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 -15.015 0.006 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.133 3.867 10 N -0.304 5.304 11 C 0.196 3.804 12 N -0.231 5.231 13 C 0.028 3.972 14 C -0.210 4.210 15 Cl -0.045 7.045 16 C -0.017 4.017 17 C -0.313 4.313 18 Br 0.041 6.959 19 H 0.076 0.924 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.244 0.756 23 H 0.182 0.818 24 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.305 -13.867 0.005 14.847 hybrid contribution 0.841 0.019 0.000 0.841 sum 6.146 -13.848 0.005 15.150 Atomic orbital electron populations 1.69970 1.06057 1.27313 1.48778 1.24908 0.94923 0.99407 0.94515 0.86355 0.79922 0.82831 0.77821 1.19575 1.20713 1.20707 1.21239 0.93397 0.90370 1.53486 0.91853 1.19259 0.88012 0.81332 0.98143 1.45939 1.11076 1.01921 1.71500 1.18396 0.87991 0.86499 0.87538 1.67739 1.12027 1.22082 1.21258 1.22618 1.00133 0.85326 0.89112 1.21419 0.93568 0.86906 1.19073 1.98325 1.86275 1.22213 1.97700 1.21016 0.93850 0.95265 0.91550 1.21947 0.90847 0.95135 1.23349 1.96617 1.05239 1.95888 1.98158 0.92427 0.94990 0.94981 0.75572 0.81785 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.29 13.29 55.43 0.74 -24.55 14 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 14 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 14 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 14 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 7 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 14 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 14 9 C 0.25 6.43 5.45 -5.19 -0.03 6.40 14 10 N -0.68 -14.41 5.65 -61.57 -0.35 -14.76 14 11 C 0.44 8.41 7.48 -154.92 -1.16 7.25 14 12 N -0.51 -9.81 9.56 -12.37 -0.12 -9.93 14 13 C 0.19 2.92 10.97 -17.52 -0.19 2.72 14 14 C -0.18 -2.42 6.34 -39.35 -0.25 -2.67 14 15 Cl -0.07 -0.85 28.98 -51.86 -1.50 -2.36 14 16 C 0.01 0.15 9.73 -39.26 -0.38 -0.23 14 17 C -0.22 -3.60 6.26 -39.17 -0.25 -3.84 14 18 Br -0.04 -0.60 32.15 -68.01 -2.19 -2.79 14 19 H 0.27 7.14 8.31 -40.82 -0.34 6.80 14 20 H 0.03 0.89 8.14 -51.93 -0.42 0.46 14 21 H 0.03 0.89 8.14 -51.93 -0.42 0.46 14 22 H 0.41 8.05 6.70 -40.82 -0.27 7.78 14 23 H 0.17 2.04 8.06 -52.49 -0.42 1.62 14 24 H 0.14 1.63 8.06 -52.48 -0.42 1.21 14 LS Contribution 256.47 15.07 3.86 3.86 Total: -1.00 -27.82 256.47 -8.75 -36.56 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -1.50 Total: 1.96 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.67 Total: -3.61 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.27 Total: -49.24 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.36 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.19 Total: -2.79 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.82 -8.75 -36.56 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306761787.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.235 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds