Wall clock time and date at job start Tue Mar 31 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99859 * 2 1 4 4 H 1.48497 * 109.47476 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46864 * 300.00050 * 3 2 1 6 6 H 1.48496 * 109.47471 * 59.99687 * 3 2 1 7 7 C 1.37874 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00268 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47257 * 179.97438 * 9 7 2 11 11 C 1.39112 * 119.99985 * 179.97438 * 10 9 7 12 12 N 1.32384 * 119.69752 * 0.02562 * 11 10 9 13 13 C 1.31967 * 121.64971 * 179.97438 * 12 11 10 14 14 C 1.38165 * 120.84908 * 0.02562 * 13 12 11 15 15 Cl 1.73601 * 120.34090 * 180.02562 * 14 13 12 16 16 C 1.38927 * 119.31101 * 0.02562 * 14 13 12 17 17 C 1.38410 * 118.48762 * 359.97438 * 16 14 13 18 18 Br 1.89097 * 120.44956 * 179.97438 * 17 16 14 19 19 H 0.96993 * 120.00287 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46974 * 59.99543 * 9 7 2 21 21 H 1.08998 * 109.47225 * 299.99816 * 9 7 2 22 22 H 0.96993 * 119.99984 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.57356 * 180.28213 * 13 12 11 24 24 H 1.08003 * 120.75465 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7395 -4.9242 0.0011 12 7 0.4367 -5.1593 0.0011 13 6 -0.0453 -6.3878 0.0011 14 6 0.8001 -7.4806 0.0016 15 17 0.1518 -9.0910 0.0009 16 6 2.1745 -7.2772 0.0027 17 6 2.6494 -5.9771 0.0027 18 35 4.5094 -5.6364 0.0048 19 1 -0.4850 0.8400 0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6241 -2.5568 0.8903 22 1 3.1567 -3.4354 0.0009 23 1 -1.1144 -6.5409 -0.0036 24 1 2.8567 -8.1145 0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306761787.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:35 Heat of formation + Delta-G solvation = 10.224246 kcal Electronic energy + Delta-G solvation = -12841.323702 eV Core-core repulsion = 10246.846011 eV Total energy + Delta-G solvation = -2594.477691 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.952 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.35780 -37.75830 -36.80857 -34.72548 -34.18967 -31.82882 -30.50019 -28.45735 -25.38817 -24.06172 -23.15067 -19.55441 -18.12330 -17.93279 -17.22154 -16.60672 -16.03266 -15.55948 -15.04104 -14.46145 -14.32595 -14.10369 -13.66093 -13.15966 -12.81725 -12.76048 -12.38195 -12.30208 -12.13243 -11.51922 -11.31361 -11.12949 -10.61183 -10.53739 -10.49189 -8.64866 -8.29899 -6.45067 -0.10728 0.16130 0.45490 1.16622 1.42467 1.42511 1.55966 2.25522 2.45778 2.58425 3.05266 3.48662 3.71561 3.78355 4.15748 4.44374 4.76035 5.01631 5.22667 5.30796 5.50845 5.82134 6.07765 6.44101 6.65972 7.14494 7.28547 8.81776 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.005475 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.513381 B = 5112.674328 C = 6459.044515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.562 4.562 8 H 0.072 0.928 9 C 0.280 3.720 10 N -0.695 5.695 11 C 0.416 3.584 12 N -0.552 5.552 13 C 0.181 3.819 14 C -0.159 4.159 15 Cl -0.044 7.044 16 C 0.017 3.983 17 C -0.224 4.224 18 Br -0.023 7.023 19 H 0.269 0.731 20 H -0.003 1.003 21 H -0.002 1.002 22 H 0.410 0.590 23 H 0.188 0.812 24 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -16.295 0.007 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.600 4.600 8 H 0.090 0.910 9 C 0.157 3.843 10 N -0.323 5.323 11 C 0.176 3.824 12 N -0.271 5.271 13 C 0.020 3.980 14 C -0.192 4.192 15 Cl -0.016 7.016 16 C -0.010 4.010 17 C -0.312 4.312 18 Br 0.061 6.939 19 H 0.078 0.922 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.249 0.751 23 H 0.205 0.795 24 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.514 -15.232 0.006 16.567 hybrid contribution 0.409 0.152 0.000 0.437 sum 6.923 -15.080 0.005 16.593 Atomic orbital electron populations 1.70103 1.07862 1.28456 1.49751 1.25900 0.95770 1.03337 0.93827 0.85215 0.78952 0.77841 0.77880 1.18320 1.20233 1.20220 1.21615 0.93991 0.91160 1.53214 0.90964 1.18569 0.88008 0.82852 0.94826 1.45485 1.10300 1.01925 1.74629 1.18574 0.88788 0.86292 0.88795 1.67653 1.12750 1.24483 1.22189 1.23017 1.01526 0.84632 0.88837 1.21506 0.93574 0.87949 1.16169 1.98347 1.85948 1.19828 1.97437 1.21383 0.94384 0.95199 0.90062 1.22032 0.91636 0.95059 1.22425 1.96628 1.03212 1.95981 1.98101 0.92174 0.98464 0.98455 0.75090 0.79503 0.80715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.29 21.45 0.28 -54.03 14 2 C 0.01 0.66 5.46 84.65 0.46 1.12 14 3 Si 0.98 42.43 29.54 68.60 2.03 44.45 14 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 14 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 14 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 14 7 C -0.56 -30.78 9.28 25.60 0.24 -30.54 14 8 H 0.07 3.73 7.60 -2.91 -0.02 3.71 14 9 C 0.28 14.95 5.45 85.63 0.47 15.42 14 10 N -0.70 -30.40 5.65 -348.70 -1.97 -32.37 14 11 C 0.42 16.14 7.48 133.04 0.99 17.14 14 12 N -0.55 -21.56 9.56 -193.06 -1.85 -23.41 14 13 C 0.18 5.36 10.97 84.66 0.93 6.29 14 14 C -0.16 -4.00 6.34 22.42 0.14 -3.85 14 15 Cl -0.04 -0.89 28.98 -2.72 -0.08 -0.97 14 16 C 0.02 0.43 9.73 22.48 0.22 0.65 14 17 C -0.22 -6.91 6.26 22.53 0.14 -6.76 14 18 Br -0.02 -0.61 32.15 -20.37 -0.65 -1.27 14 19 H 0.27 14.76 8.31 -92.71 -0.77 13.99 14 20 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 14 21 H 0.00 -0.15 8.14 -2.39 -0.02 -0.16 14 22 H 0.41 16.56 6.70 -92.71 -0.62 15.94 14 23 H 0.19 4.42 8.06 -2.91 -0.02 4.40 14 24 H 0.18 3.28 8.06 -2.91 -0.02 3.26 14 Total: -1.00 -61.16 256.47 1.97 -59.19 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.62 Total: 8.95 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 3.59 Total: -0.55 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -3.53 Total: -109.81 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -0.65 Total: -1.27 kcal Total: -61.16 1.97 -59.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306761787.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.413 kcal (2) G-P(sol) polarization free energy of solvation -61.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds