Wall clock time and date at job start Tue Mar 31 2020 06:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47105 * 269.99583 * 3 2 1 5 5 H 1.48499 * 109.47427 * 29.99831 * 3 2 1 6 6 H 1.48508 * 109.47164 * 149.99864 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21623 * 119.99969 * 0.28063 * 11 10 9 13 13 C 1.47233 * 120.00130 * 180.27637 * 11 10 9 14 14 N 1.30592 * 125.53228 * 359.69962 * 13 11 10 15 15 C 1.30738 * 115.89723 * 179.77819 * 14 13 11 16 16 Br 1.89098 * 122.11663 * 180.23865 * 15 14 13 17 17 C 1.34311 * 115.76413 * 0.51427 * 15 14 13 18 18 S 1.71075 * 109.09058 * 359.72720 * 17 15 14 19 19 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 1.07993 * 125.45300 * 179.73883 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5579 -5.1056 0.0061 13 6 2.7104 -6.0025 0.0123 14 7 4.0113 -5.8888 0.0074 15 6 4.6826 -7.0107 0.0190 16 35 6.5731 -7.0511 0.0209 17 6 3.9443 -8.1327 0.0236 18 16 2.2862 -7.7115 0.0200 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8902 22 1 3.1566 -3.4355 0.0009 23 1 4.3349 -9.1395 0.0290 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307124141.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:18 Heat of formation + Delta-G solvation = -15.433461 kcal Electronic energy + Delta-G solvation = -12712.524628 eV Core-core repulsion = 10118.978042 eV Total energy + Delta-G solvation = -2593.546586 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.31408 -40.09687 -36.28134 -34.45636 -33.09405 -30.94766 -29.47784 -27.42330 -24.73148 -22.67416 -21.01560 -19.92658 -18.80831 -17.83992 -17.07496 -16.78175 -16.38492 -15.86986 -15.54539 -14.86194 -14.50292 -14.05365 -13.99194 -12.97653 -12.83615 -12.73082 -12.26548 -12.03887 -11.64509 -11.52973 -11.48662 -11.05402 -10.94660 -10.83039 -10.09203 -9.82163 -8.30621 -6.46726 -1.01646 -0.20064 -0.03034 0.86375 0.92740 1.43794 1.45656 1.57158 1.98802 2.21235 2.42652 3.04480 3.13486 3.77340 4.02495 4.38760 5.02724 5.19281 5.33662 5.55751 5.79614 6.03269 6.58557 6.67128 7.07798 7.27352 8.81284 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.022407 B = 0.004469 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.306748 B = 6263.985304 C = 7498.138023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.983 3.017 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.265 3.735 10 N -0.680 5.680 11 C 0.580 3.420 12 O -0.574 6.574 13 C -0.043 4.043 14 N -0.424 5.424 15 C 0.027 3.973 16 Br 0.029 6.971 17 C -0.227 4.227 18 S 0.351 5.649 19 H 0.271 0.729 20 H 0.002 0.998 21 H 0.002 0.998 22 H 0.411 0.589 23 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.713 -19.644 0.084 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.598 4.598 8 H 0.096 0.904 9 C 0.143 3.857 10 N -0.328 5.328 11 C 0.363 3.637 12 O -0.455 6.455 13 C -0.318 4.318 14 N -0.143 5.143 15 C -0.190 4.190 16 Br 0.111 6.889 17 C -0.371 4.371 18 S 0.606 5.394 19 H 0.079 0.921 20 H 0.020 0.980 21 H 0.020 0.980 22 H 0.247 0.753 23 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 12.641 -19.663 0.078 23.376 hybrid contribution 1.029 1.136 -0.010 1.533 sum 13.670 -18.527 0.068 23.024 Atomic orbital electron populations 1.70107 1.08010 1.28703 1.49592 1.25979 0.95809 1.03588 0.93689 0.85181 0.78440 0.77120 0.78654 1.19540 1.20558 1.18385 1.21553 0.94166 0.90602 1.53468 0.90388 1.18775 0.88366 0.83314 0.95291 1.46110 1.12020 1.04867 1.69822 1.17136 0.86410 0.82605 0.77598 1.90799 1.16195 1.84940 1.53536 1.27352 0.92535 0.99612 1.12300 1.66574 1.04789 1.31001 1.11936 1.21870 0.95866 0.89077 1.12179 1.96775 0.95572 1.98591 1.97941 1.27369 0.98551 1.05699 1.05456 1.83891 1.01191 0.96201 1.58152 0.92052 0.98030 0.98010 0.75299 0.74814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 13.29 21.45 0.28 -54.93 14 2 C 0.01 0.53 5.46 84.66 0.46 1.00 14 3 Si 0.98 42.77 29.54 68.60 2.03 44.80 14 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 14 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 14 7 C -0.56 -31.04 9.28 25.60 0.24 -30.80 14 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 14 9 C 0.26 14.61 5.43 85.63 0.46 15.08 14 10 N -0.68 -31.00 5.54 -470.30 -2.61 -33.61 14 11 C 0.58 24.59 7.81 86.61 0.68 25.27 14 12 O -0.57 -27.57 16.94 -4.10 -0.07 -27.64 14 13 C -0.04 -1.40 7.46 87.24 0.65 -0.75 14 14 N -0.42 -13.11 10.24 -185.24 -1.90 -15.01 14 15 C 0.03 0.64 7.10 83.96 0.60 1.24 14 16 Br 0.03 0.59 33.97 -20.37 -0.69 -0.10 14 17 C -0.23 -3.86 10.90 66.92 0.73 -3.13 14 18 S 0.35 7.46 23.03 -56.49 -1.30 6.16 14 19 H 0.27 15.02 8.31 -92.71 -0.77 14.25 14 20 H 0.00 0.11 8.14 -2.38 -0.02 0.09 14 21 H 0.00 0.12 8.14 -2.39 -0.02 0.10 14 22 H 0.41 17.16 7.98 -92.71 -0.74 16.42 14 23 H 0.24 1.85 8.06 -2.91 -0.02 1.82 14 Total: -1.00 -67.74 255.52 0.09 -67.65 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 0.53 Total: 4.78 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 3.82 Total: 7.90 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -4.22 Total: -103.55 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.07 Total: -27.64 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 7.46 SS G_CDS: -1.30 Total: 6.16 kcal Atomic # 35 Polarization: 0.59 SS G_CDS: -0.69 Total: -0.10 kcal Total: -67.74 0.09 -67.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307124141.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.221 kcal (2) G-P(sol) polarization free energy of solvation -67.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds