Wall clock time and date at job start Tue Mar 31 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48499 * 109.47077 * 240.00049 * 3 2 1 5 5 H 1.48504 * 109.47076 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47248 * 120.00176 * 3 2 1 7 7 C 1.37873 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00334 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47349 * 180.02562 * 9 7 2 11 11 C 1.39110 * 120.00153 * 180.02562 * 10 9 7 12 12 N 1.32384 * 119.70165 * 0.02562 * 11 10 9 13 13 C 1.31969 * 121.64972 * 179.97438 * 12 11 10 14 14 C 1.38135 * 120.85858 * 0.02562 * 13 12 11 15 15 Br 1.89096 * 120.33752 * 180.02562 * 14 13 12 16 16 C 1.38906 * 119.32072 * 0.02562 * 14 13 12 17 17 C 1.38430 * 118.48832 * 359.97438 * 16 14 13 18 18 Cl 1.73596 * 120.45512 * 179.97438 * 17 16 14 19 19 H 0.97003 * 119.99740 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47020 * 60.00247 * 9 7 2 21 21 H 1.09000 * 109.47398 * 300.00558 * 9 7 2 22 22 H 0.97003 * 120.00109 * 359.97438 * 10 9 7 23 23 H 1.07992 * 119.56854 * 180.28210 * 13 12 11 24 24 H 1.08003 * 120.75888 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7394 -4.9242 -0.0011 12 7 0.4366 -5.1593 -0.0021 13 6 -0.0453 -6.3879 -0.0031 14 6 0.7999 -7.4805 -0.0027 15 35 0.0934 -9.2345 -0.0049 16 6 2.1740 -7.2775 -0.0005 17 6 2.6494 -5.9774 0.0005 18 17 4.3570 -5.6650 0.0039 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 3.1568 -3.4354 -0.0009 23 1 -1.1143 -6.5410 -0.0086 24 1 2.8560 -8.1150 0.0003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307515580.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:38 Heat of formation + Delta-G solvation = 25.780845 kcal Electronic energy + Delta-G solvation = -12841.207721 eV Core-core repulsion = 10247.404614 eV Total energy + Delta-G solvation = -2593.803106 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.952 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.02840 -36.44900 -35.53436 -32.94492 -32.23627 -31.10500 -28.85374 -26.55134 -23.90280 -22.67347 -21.50806 -17.99902 -16.58389 -16.29374 -15.81691 -14.75515 -14.62710 -14.46114 -13.43433 -13.01535 -12.65283 -12.37915 -12.12300 -11.97828 -11.21960 -11.09915 -10.99634 -10.88013 -10.35817 -10.26446 -9.52795 -9.48263 -9.38082 -9.22841 -8.60060 -7.16276 -6.23432 -4.30658 1.20360 1.36093 1.68942 2.30139 3.22370 3.27220 3.28619 3.77452 3.89356 4.29255 4.71972 4.87714 5.13234 5.16287 5.33955 5.72406 5.90751 6.37479 7.06229 7.40800 7.47092 7.64350 7.86657 8.09558 8.51236 8.80366 9.35335 10.86440 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.004160 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.285744 B = 6728.544879 C = 7597.686780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.254 3.746 10 N -0.680 5.680 11 C 0.435 3.565 12 N -0.515 5.515 13 C 0.200 3.800 14 C -0.228 4.228 15 Br -0.053 7.053 16 C 0.008 3.992 17 C -0.172 4.172 18 Cl -0.063 7.063 19 H 0.267 0.733 20 H 0.032 0.968 21 H 0.032 0.968 22 H 0.406 0.594 23 H 0.164 0.836 24 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -17.638 -0.009 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.133 3.867 10 N -0.303 5.303 11 C 0.192 3.808 12 N -0.234 5.234 13 C 0.036 3.964 14 C -0.313 4.313 15 Br 0.030 6.970 16 C -0.019 4.019 17 C -0.208 4.208 18 Cl -0.035 7.035 19 H 0.077 0.923 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.243 0.757 23 H 0.181 0.819 24 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.242 -17.088 -0.010 17.133 hybrid contribution 1.658 0.657 0.002 1.783 sum 2.900 -16.430 -0.008 16.684 Atomic orbital electron populations 1.69955 1.06053 1.27542 1.48538 1.24903 0.94926 0.99378 0.94483 0.86465 0.79455 0.82183 0.78794 1.20012 1.20960 1.20008 1.21163 0.93309 0.90415 1.53813 0.91981 1.19251 0.87987 0.81263 0.98154 1.45856 1.11050 1.01963 1.71421 1.18486 0.87970 0.86492 0.87864 1.67735 1.11745 1.22403 1.21495 1.22604 0.99942 0.85378 0.88464 1.22209 0.95105 0.91954 1.22060 1.96604 1.85639 1.16431 1.98345 1.21003 0.93825 0.95225 0.91844 1.21132 0.85354 0.94080 1.20237 1.98332 1.11856 1.95749 1.97524 0.92302 0.94963 0.94975 0.75665 0.81860 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.26 13.29 55.43 0.74 -24.52 14 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 14 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 14 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 14 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 14 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 14 7 C -0.55 -14.66 9.28 -34.44 -0.32 -14.98 14 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 14 9 C 0.25 6.43 5.45 -5.20 -0.03 6.40 14 10 N -0.68 -14.32 5.66 -61.56 -0.35 -14.66 14 11 C 0.43 8.29 7.48 -154.91 -1.16 7.14 14 12 N -0.51 -9.86 9.56 -12.37 -0.12 -9.98 14 13 C 0.20 3.06 10.93 -17.53 -0.19 2.87 14 14 C -0.23 -3.13 6.24 -39.37 -0.25 -3.38 14 15 Br -0.05 -0.61 33.73 -68.01 -2.29 -2.90 14 16 C 0.01 0.12 9.73 -39.26 -0.38 -0.27 14 17 C -0.17 -2.75 6.36 -39.16 -0.25 -3.00 14 18 Cl -0.06 -0.91 27.62 -51.86 -1.43 -2.34 14 19 H 0.27 7.20 8.31 -40.82 -0.34 6.86 14 20 H 0.03 0.89 8.14 -51.93 -0.42 0.47 14 21 H 0.03 0.89 8.14 -51.93 -0.42 0.46 14 22 H 0.41 7.97 6.98 -40.82 -0.28 7.69 14 23 H 0.16 2.07 8.06 -52.49 -0.42 1.65 14 24 H 0.14 1.63 8.06 -52.48 -0.42 1.21 14 LS Contribution 256.94 15.07 3.87 3.87 Total: -1.00 -27.66 256.94 -8.79 -36.44 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -1.51 Total: 1.98 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.67 Total: -3.48 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.27 Total: -49.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.43 Total: -2.34 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.66 -8.79 -36.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307515580.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.226 kcal (2) G-P(sol) polarization free energy of solvation -27.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds