Wall clock time and date at job start Tue Mar 31 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48499 * 109.47077 * 240.00049 * 3 2 1 5 5 H 1.48504 * 109.47076 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47248 * 120.00176 * 3 2 1 7 7 C 1.37873 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99815 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00334 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47349 * 180.02562 * 9 7 2 11 11 C 1.39110 * 120.00153 * 180.02562 * 10 9 7 12 12 N 1.32384 * 119.70165 * 0.02562 * 11 10 9 13 13 C 1.31969 * 121.64972 * 179.97438 * 12 11 10 14 14 C 1.38135 * 120.85858 * 0.02562 * 13 12 11 15 15 Br 1.89096 * 120.33752 * 180.02562 * 14 13 12 16 16 C 1.38906 * 119.32072 * 0.02562 * 14 13 12 17 17 C 1.38430 * 118.48832 * 359.97438 * 16 14 13 18 18 Cl 1.73596 * 120.45512 * 179.97438 * 17 16 14 19 19 H 0.97003 * 119.99740 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47020 * 60.00247 * 9 7 2 21 21 H 1.09000 * 109.47398 * 300.00558 * 9 7 2 22 22 H 0.97003 * 120.00109 * 359.97438 * 10 9 7 23 23 H 1.07992 * 119.56854 * 180.28210 * 13 12 11 24 24 H 1.08003 * 120.75888 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7394 -4.9242 -0.0011 12 7 0.4366 -5.1593 -0.0021 13 6 -0.0453 -6.3879 -0.0031 14 6 0.7999 -7.4805 -0.0027 15 35 0.0934 -9.2345 -0.0049 16 6 2.1740 -7.2775 -0.0005 17 6 2.6494 -5.9774 0.0005 18 17 4.3570 -5.6650 0.0039 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 3.1568 -3.4354 -0.0009 23 1 -1.1143 -6.5410 -0.0086 24 1 2.8560 -8.1150 0.0003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307515580.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:38 Heat of formation + Delta-G solvation = 9.456748 kcal Electronic energy + Delta-G solvation = -12841.915587 eV Core-core repulsion = 10247.404614 eV Total energy + Delta-G solvation = -2594.510972 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.952 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.35810 -37.66731 -37.13066 -34.80319 -33.61064 -32.38489 -30.34299 -28.25618 -25.45439 -24.16303 -23.08406 -19.58968 -18.07583 -17.93911 -17.13914 -16.61402 -16.05566 -15.82058 -14.99267 -14.42306 -14.32068 -14.08644 -13.55626 -13.16985 -12.87126 -12.81820 -12.37810 -12.32014 -12.18465 -11.49083 -11.33527 -11.00380 -10.59480 -10.54051 -10.53980 -8.64389 -8.29755 -6.45259 -0.06018 0.10482 0.54004 1.07394 1.42056 1.45013 1.53201 2.24223 2.45058 2.57868 3.05188 3.45780 3.72591 3.80091 4.14662 4.45334 4.72839 5.01507 5.22468 5.30571 5.50039 5.81822 6.07333 6.43849 6.65210 7.14107 7.28306 8.81407 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.004160 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.285744 B = 6728.544879 C = 7597.686780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.281 3.719 10 N -0.694 5.694 11 C 0.412 3.588 12 N -0.553 5.553 13 C 0.189 3.811 14 C -0.213 4.213 15 Br -0.018 7.018 16 C 0.016 3.984 17 C -0.170 4.170 18 Cl -0.047 7.047 19 H 0.270 0.730 20 H -0.002 1.002 21 H -0.003 1.003 22 H 0.410 0.590 23 H 0.186 0.814 24 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 -19.017 -0.010 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.602 4.602 8 H 0.090 0.910 9 C 0.158 3.842 10 N -0.322 5.322 11 C 0.172 3.828 12 N -0.273 5.273 13 C 0.027 3.973 14 C -0.299 4.299 15 Br 0.065 6.935 16 C -0.011 4.011 17 C -0.206 4.206 18 Cl -0.019 7.019 19 H 0.078 0.922 20 H 0.016 0.984 21 H 0.015 0.985 22 H 0.249 0.751 23 H 0.203 0.797 24 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.390 -18.552 -0.010 18.705 hybrid contribution 1.235 0.804 0.002 1.474 sum 3.626 -17.747 -0.008 18.114 Atomic orbital electron populations 1.70095 1.07858 1.28589 1.49563 1.25896 0.95766 1.03315 0.93790 0.85322 0.78105 0.77227 0.79288 1.19017 1.20639 1.19007 1.21561 0.93990 0.91196 1.53497 0.90959 1.18559 0.87991 0.82798 0.94831 1.45392 1.10290 1.01942 1.74560 1.18656 0.88742 0.86286 0.89129 1.67646 1.12487 1.24805 1.22342 1.22996 1.01270 0.84728 0.88289 1.22432 0.95138 0.93331 1.18972 1.96660 1.85284 1.13372 1.98151 1.21379 0.94349 0.95140 0.90239 1.21147 0.85882 0.94011 1.19521 1.98336 1.10338 1.95790 1.97449 0.92156 0.98447 0.98462 0.75145 0.79744 0.80709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 13.29 21.45 0.28 -53.99 14 2 C 0.01 0.70 5.46 84.65 0.46 1.17 14 3 Si 0.98 42.36 29.54 68.60 2.03 44.38 14 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 14 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 14 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 14 7 C -0.56 -30.88 9.28 25.60 0.24 -30.65 14 8 H 0.07 3.70 7.60 -2.91 -0.02 3.68 14 9 C 0.28 14.97 5.45 85.63 0.47 15.44 14 10 N -0.69 -30.26 5.66 -348.68 -1.97 -32.23 14 11 C 0.41 15.96 7.48 133.05 1.00 16.95 14 12 N -0.55 -21.68 9.56 -193.06 -1.85 -23.53 14 13 C 0.19 5.64 10.93 84.65 0.93 6.57 14 14 C -0.21 -5.40 6.24 22.41 0.14 -5.26 14 15 Br -0.02 -0.36 33.73 -20.37 -0.69 -1.04 14 16 C 0.02 0.41 9.73 22.48 0.22 0.63 14 17 C -0.17 -5.25 6.36 22.54 0.14 -5.10 14 18 Cl -0.05 -1.30 27.62 -2.72 -0.08 -1.37 14 19 H 0.27 14.84 8.31 -92.71 -0.77 14.07 14 20 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 14 21 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 14 22 H 0.41 16.46 6.98 -92.71 -0.65 15.81 14 23 H 0.19 4.48 8.06 -2.91 -0.02 4.46 14 24 H 0.18 3.29 8.06 -2.91 -0.02 3.27 14 Total: -1.00 -60.88 256.94 1.91 -58.97 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.60 Total: 9.08 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 3.59 Total: -0.27 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -3.54 Total: -109.75 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.37 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -0.69 Total: -1.04 kcal Total: -60.88 1.91 -58.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307515580.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.428 kcal (2) G-P(sol) polarization free energy of solvation -60.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds