Wall clock time and date at job start Tue Mar 31 2020 06:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21703 * 120.00193 * 359.72118 * 11 10 9 13 13 C 1.46564 * 119.99718 * 179.72448 * 11 10 9 14 14 S 1.76211 * 126.17855 * 359.68481 * 13 11 10 15 15 C 1.70921 * 90.38616 * 179.97438 * 14 13 11 16 16 N 1.29354 * 110.60695 * 0.32283 * 15 14 13 17 17 C 1.31025 * 117.46115 * 359.74385 * 16 15 14 18 18 Br 1.89098 * 123.05279 * 180.02562 * 17 16 15 19 19 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 20 20 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 21 21 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 22 22 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 23 23 H 1.08005 * 124.69258 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5574 -5.1057 -0.0046 13 6 2.7065 -5.9972 -0.0086 14 16 4.4635 -5.8635 -0.0159 15 6 4.6047 -7.5668 -0.0170 16 7 3.4357 -8.1206 -0.0191 17 6 2.3919 -7.3286 -0.0148 18 35 0.6122 -7.9678 -0.0163 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8898 21 1 0.6241 -2.5567 0.8902 22 1 3.1569 -3.4353 0.0021 23 1 5.5405 -8.1061 -0.0207 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307712297.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:25 Heat of formation + Delta-G solvation = -10.580749 kcal Electronic energy + Delta-G solvation = -12880.257214 eV Core-core repulsion = 10286.921057 eV Total energy + Delta-G solvation = -2593.336157 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.21181 -40.03849 -36.22856 -34.42614 -33.00219 -31.25574 -29.19023 -26.97506 -24.96644 -22.58880 -21.01722 -20.10204 -18.68600 -17.70934 -16.99760 -16.64437 -16.52661 -15.53281 -15.46193 -15.08146 -14.72720 -14.06454 -13.93716 -13.07513 -12.83594 -12.70958 -12.23595 -12.11171 -11.70909 -11.48500 -11.11160 -10.82442 -10.77436 -10.64801 -10.04485 -9.85458 -8.28705 -6.45566 -1.03141 -0.31246 0.27665 0.73860 1.16009 1.45365 1.47580 1.58694 1.99887 2.17252 2.44240 3.06707 3.33390 3.69414 3.90193 4.52683 5.08322 5.22425 5.37200 5.59363 5.81635 6.18493 6.60098 6.71311 7.14781 7.30680 8.83221 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.028207 B = 0.004992 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.435149 B = 5607.808574 C = 6585.088730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.268 3.732 10 N -0.697 5.697 11 C 0.567 3.433 12 O -0.553 6.553 13 C -0.292 4.292 14 S 0.284 5.716 15 C 0.050 3.950 16 N -0.482 5.482 17 C 0.114 3.886 18 Br 0.032 6.968 19 H 0.269 0.731 20 H -0.005 1.005 21 H -0.004 1.004 22 H 0.404 0.596 23 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.100 -15.084 -0.042 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.347 5.347 11 C 0.352 3.648 12 O -0.433 6.433 13 C -0.420 4.420 14 S 0.539 5.461 15 C -0.245 4.245 16 N -0.196 5.196 17 C -0.105 4.105 18 Br 0.115 6.885 19 H 0.078 0.922 20 H 0.013 0.987 21 H 0.014 0.986 22 H 0.239 0.761 23 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 12.205 -15.108 -0.043 19.422 hybrid contribution -0.448 0.604 -0.009 0.752 sum 11.757 -14.503 -0.052 18.670 Atomic orbital electron populations 1.70129 1.08235 1.28627 1.49700 1.26044 0.95773 1.03839 0.93786 0.85159 0.78553 0.76932 0.78605 1.19613 1.21073 1.17758 1.21578 0.94346 0.90354 1.53256 0.89701 1.18660 0.88399 0.83476 0.94837 1.46107 1.11180 1.04938 1.72473 1.17133 0.87410 0.82515 0.77766 1.90857 1.16582 1.84569 1.51293 1.25876 1.00901 0.97028 1.18180 1.83801 0.93611 1.07160 1.61482 1.29633 1.00425 0.96089 0.98368 1.66042 0.97795 1.37921 1.17877 1.22404 0.95023 0.88771 1.04343 1.96800 1.06988 1.87692 1.97001 0.92209 0.98657 0.98639 0.76067 0.71961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.71 14 2 C 0.01 0.30 5.46 84.66 0.46 0.76 14 3 Si 0.98 41.21 29.54 68.60 2.03 43.24 14 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 14 5 H -0.29 -11.91 7.11 99.48 0.71 -11.20 14 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 14 7 C -0.56 -29.55 9.28 25.60 0.24 -29.31 14 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 14 9 C 0.27 14.43 5.43 85.63 0.46 14.90 14 10 N -0.70 -29.56 5.54 -470.92 -2.61 -32.17 14 11 C 0.57 23.68 7.78 86.41 0.67 24.35 14 12 O -0.55 -27.25 14.80 -4.36 -0.06 -27.31 14 13 C -0.29 -9.30 6.52 24.11 0.16 -9.14 14 14 S 0.28 5.25 22.35 -56.49 -1.26 3.99 14 15 C 0.05 0.77 12.21 130.61 1.59 2.36 14 16 N -0.48 -12.09 10.50 -196.69 -2.07 -14.15 14 17 C 0.11 3.59 7.29 84.48 0.62 4.20 14 18 Br 0.03 1.06 31.85 -20.37 -0.65 0.41 14 19 H 0.27 14.90 8.31 -92.71 -0.77 14.13 14 20 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 14 21 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 14 22 H 0.40 14.14 7.51 -92.71 -0.70 13.44 14 23 H 0.26 0.98 8.06 -2.91 -0.02 0.95 14 Total: -1.00 -71.63 250.89 0.43 -71.19 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 0.57 Total: 1.39 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 4.20 Total: 8.13 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -4.39 Total: -101.04 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.06 Total: -27.31 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.26 Total: 3.99 kcal Atomic # 35 Polarization: 1.06 SS G_CDS: -0.65 Total: 0.41 kcal Total: -71.63 0.43 -71.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307712297.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.614 kcal (2) G-P(sol) polarization free energy of solvation -71.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds