Wall clock time and date at job start Tue Mar 31 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31901 * 119.61225 * 2 1 4 4 C 1.31952 * 121.70573 * 179.97438 * 3 2 1 5 5 Cl 1.73604 * 119.63146 * 179.72683 * 4 3 2 6 6 C 1.38398 * 120.73054 * 0.02562 * 4 3 2 7 7 C 1.38558 * 119.15011 * 0.02562 * 6 4 3 8 8 C 1.38152 * 119.60534 * 180.02562 * 2 1 3 9 9 S 1.76202 * 120.40205 * 0.02562 * 8 2 1 10 10 O 1.42096 * 106.40067 * 176.55517 * 9 8 2 11 11 O 1.42106 * 106.40077 * 309.47091 * 9 8 2 12 12 N 1.65596 * 107.22196 * 63.01351 * 9 8 2 13 13 C 1.46504 * 119.99977 * 66.26543 * 12 9 8 14 14 C 1.50697 * 109.46829 * 166.17078 * 13 12 9 15 15 H 1.07994 * 120.00672 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99643 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00517 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46951 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47330 * 119.99504 * 18 16 14 21 21 H 1.48502 * 109.47242 * 239.99772 * 18 16 14 22 22 H 1.09002 * 109.47400 * 96.17449 * 1 2 3 23 23 H 1.09008 * 109.47453 * 216.17946 * 1 2 3 24 24 H 1.09000 * 109.47045 * 336.17632 * 1 2 3 25 25 H 1.08002 * 120.42280 * 179.97438 * 6 4 3 26 26 H 1.08004 * 120.78113 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00025 * 246.26995 * 12 9 8 28 28 H 1.09006 * 109.47029 * 286.16925 * 13 12 9 29 29 H 1.08997 * 109.47181 * 46.16696 * 13 12 9 30 30 H 0.96991 * 120.00593 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1587 1.1467 0.0000 4 6 3.4773 1.1949 0.0005 5 17 4.2800 2.7343 -0.0067 6 6 4.2275 0.0319 0.0005 7 6 3.5765 -1.1912 -0.0005 8 6 2.1894 -1.2012 -0.0005 9 16 1.3086 -2.7272 -0.0019 10 8 2.2866 -3.7548 -0.0841 11 8 0.3571 -2.6422 1.0501 12 7 0.4425 -2.7921 -1.4118 13 6 1.1404 -2.8810 -2.6968 14 6 0.1601 -3.2645 -3.7752 15 1 -0.8786 -3.4264 -3.5282 16 6 0.5898 -3.4099 -5.0773 17 7 1.8549 -3.2134 -5.3782 18 14 -0.6251 -3.8861 -6.4141 19 1 -1.9764 -4.0484 -5.8199 20 1 -0.6638 -2.8223 -7.4496 21 1 -0.2009 -5.1665 -7.0353 22 1 -0.3634 -0.1105 -1.0217 23 1 -0.3634 -0.8295 0.6067 24 1 -0.3633 0.9401 0.4151 25 1 5.3066 0.0772 0.0005 26 1 4.1359 -2.1151 -0.0010 27 1 -0.5270 -2.7712 -1.3868 28 1 1.5847 -1.9149 -2.9365 29 1 1.9242 -3.6357 -2.6331 30 1 2.1572 -3.3160 -6.2941 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309349389.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:42 Heat of formation + Delta-G solvation = -73.542977 kcal Electronic energy + Delta-G solvation = -18840.130188 eV Core-core repulsion = 15594.324565 eV Total energy + Delta-G solvation = -3245.805623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56656 -38.46002 -37.97384 -37.02945 -36.54539 -34.39351 -34.09889 -33.66360 -29.01933 -28.67732 -25.33429 -24.50599 -23.72708 -20.74541 -19.39804 -18.82524 -18.40963 -17.90501 -17.65114 -17.02916 -16.33543 -16.15263 -15.44917 -15.21143 -14.68597 -14.54025 -14.33365 -14.09803 -14.03662 -13.73053 -13.50393 -13.27085 -12.90534 -12.78846 -12.70167 -12.61547 -12.48626 -12.27999 -12.08629 -11.38677 -11.37324 -11.01091 -10.83535 -10.32597 -10.15670 -8.24432 -6.35957 -0.87351 -0.58715 -0.14494 0.44941 1.45832 1.47762 1.59421 1.92857 2.16362 2.43196 2.63070 2.99330 3.11738 3.22479 3.49457 3.65437 3.85097 4.22872 4.34768 4.46505 4.56880 4.58318 4.71702 4.95402 5.20322 5.26696 5.30898 5.75379 5.96686 6.28974 6.31885 6.79263 7.34252 8.86945 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.005310 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.694648 B = 5271.621871 C = 6055.006333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.245 3.755 3 N -0.512 5.512 4 C 0.213 3.787 5 Cl -0.006 7.006 6 C -0.178 4.178 7 C 0.033 3.967 8 C -0.743 4.743 9 S 2.719 3.281 10 O -0.984 6.984 11 O -0.971 6.971 12 N -1.096 6.096 13 C 0.260 3.740 14 C -0.544 4.544 15 H 0.080 0.920 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.970 3.030 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.282 1.282 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.190 0.810 26 H 0.180 0.820 27 H 0.423 0.577 28 H 0.008 0.992 29 H 0.014 0.986 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 7.980 10.314 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.106 3.894 3 N -0.226 5.226 4 C 0.049 3.951 5 Cl 0.023 6.977 6 C -0.199 4.199 7 C 0.007 3.993 8 C -0.831 4.831 9 S 2.807 3.193 10 O -0.974 6.974 11 O -0.961 6.961 12 N -0.858 5.858 13 C 0.135 3.865 14 C -0.584 4.584 15 H 0.098 0.902 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.795 3.205 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.208 1.208 22 H 0.127 0.873 23 H 0.131 0.869 24 H 0.129 0.871 25 H 0.208 0.792 26 H 0.197 0.803 27 H 0.259 0.741 28 H 0.026 0.974 29 H 0.032 0.968 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.309 8.287 10.825 13.827 hybrid contribution 0.239 0.004 -1.166 1.191 sum 2.548 8.291 9.659 12.981 Atomic orbital electron populations 1.21687 0.86094 1.07936 1.06176 1.21112 0.97773 0.85427 0.85049 1.66995 1.09037 1.30114 1.16429 1.22321 0.90133 0.89095 0.93520 1.98422 1.75991 1.27498 1.95790 1.22256 1.03752 0.89985 1.03894 1.21777 0.91735 1.00576 0.85259 1.31914 1.08214 1.21888 1.21059 1.01018 0.72901 0.73126 0.72265 1.93524 1.62703 1.54388 1.86819 1.93509 1.61118 1.87167 1.54323 1.55208 1.18961 1.90314 1.21365 1.18667 0.92703 0.95479 0.79640 1.21652 0.96199 1.47828 0.92675 0.90237 1.25866 0.97121 0.94968 1.01207 1.70056 1.16423 1.49787 1.20442 0.85313 0.79214 0.77623 0.78340 1.18184 1.20626 1.20785 0.87296 0.86867 0.87085 0.79235 0.80287 0.74052 0.97414 0.96758 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 9.32 71.23 0.66 -3.53 16 2 C 0.25 7.56 6.78 42.53 0.29 7.85 16 3 N -0.51 -15.77 10.25 -174.85 -1.79 -17.57 16 4 C 0.21 5.79 7.27 84.71 0.62 6.41 16 5 Cl -0.01 -0.13 29.11 -2.72 -0.08 -0.21 16 6 C -0.18 -4.27 9.88 22.38 0.22 -4.05 16 7 C 0.03 0.92 9.66 22.46 0.22 1.13 16 8 C -0.74 -23.44 5.91 22.36 0.13 -23.31 16 9 S 2.72 93.28 5.05 -56.49 -0.29 92.99 16 10 O -0.98 -39.22 16.50 -128.00 -2.11 -41.33 16 11 O -0.97 -33.22 15.54 -128.00 -1.99 -35.21 16 12 N -1.10 -40.41 5.72 -190.78 -1.09 -41.51 16 13 C 0.26 12.29 5.98 85.63 0.51 12.80 16 14 C -0.54 -27.64 9.27 25.60 0.24 -27.41 16 15 H 0.08 3.75 7.64 -2.91 -0.02 3.73 16 16 C 0.01 0.43 5.46 84.65 0.46 0.90 16 17 N -0.93 -52.11 13.29 21.45 0.28 -51.83 16 18 Si 0.97 40.97 29.54 68.60 2.03 43.00 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 23 H 0.11 2.90 5.21 -2.38 -0.01 2.89 16 24 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 26 H 0.18 4.35 7.44 -2.91 -0.02 4.33 16 27 H 0.42 13.56 8.52 -96.75 -0.82 12.74 16 28 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.01 0.76 7.75 -2.39 -0.02 0.74 16 30 H 0.27 14.15 8.31 -92.72 -0.77 13.38 16 Total: -1.00 -64.90 293.22 -1.32 -66.22 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.37 Total: 14.64 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 3.35 Total: -29.21 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -2.60 Total: -110.90 kcal Atomic # 8 Polarization: -72.43 SS G_CDS: -4.10 Total: -76.53 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: 93.28 SS G_CDS: -0.29 Total: 92.99 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.08 Total: -0.21 kcal Total: -64.90 -1.32 -66.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309349389.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.320 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds