Wall clock time and date at job start Tue Mar 31 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46951 * 2 1 4 4 C 1.52999 * 109.47127 * 119.99701 * 2 1 3 5 5 C 1.52997 * 109.47276 * 175.00176 * 4 2 1 6 6 C 1.53005 * 109.47527 * 175.00131 * 5 4 2 7 7 C 1.53006 * 109.46880 * 294.88199 * 6 5 4 8 8 C 1.53000 * 109.46787 * 175.40128 * 7 6 5 9 9 C 1.52998 * 109.46865 * 295.40265 * 7 6 5 10 10 N 1.46499 * 109.47191 * 295.00089 * 5 4 2 11 11 C 1.39683 * 120.00293 * 157.60849 * 10 5 4 12 12 C 1.39343 * 119.95024 * 354.79438 * 11 10 5 13 13 C 1.38475 * 120.42509 * 180.02562 * 12 11 10 14 14 C 1.37690 * 120.32454 * 0.02562 * 13 12 11 15 15 C 1.40751 * 119.89411 * 359.97438 * 14 13 12 16 16 C 1.41409 * 120.20777 * 180.02562 * 15 14 13 17 17 H 1.07990 * 119.99953 * 28.56096 * 16 15 14 18 18 C 1.39934 * 119.99885 * 208.56495 * 16 15 14 19 19 N 1.30831 * 120.00059 * 10.63020 * 18 16 15 20 20 Si 1.86796 * 119.99969 * 190.62952 * 18 16 15 21 21 H 1.48498 * 109.46979 * 94.99055 * 20 18 16 22 22 H 1.48497 * 109.47168 * 214.99105 * 20 18 16 23 23 H 1.48498 * 109.47060 * 334.98804 * 20 18 16 24 24 C 1.38277 * 119.95324 * 174.77839 * 11 10 5 25 25 H 1.08997 * 109.47275 * 299.99601 * 1 2 3 26 26 H 1.08995 * 109.47156 * 60.00783 * 1 2 3 27 27 H 1.09002 * 109.46667 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47516 * 239.99733 * 2 1 3 29 29 H 1.09002 * 109.47363 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47287 * 299.99630 * 3 2 1 31 31 H 1.09000 * 109.47659 * 59.99853 * 3 2 1 32 32 H 1.09007 * 109.47212 * 55.00379 * 4 2 1 33 33 H 1.09002 * 109.47151 * 295.00337 * 4 2 1 34 34 H 1.08998 * 109.47283 * 55.00104 * 5 4 2 35 35 H 1.08999 * 109.46802 * 54.87701 * 6 5 4 36 36 H 1.08997 * 109.47220 * 174.88471 * 6 5 4 37 37 H 1.08997 * 109.46726 * 55.40138 * 7 6 5 38 38 H 1.08998 * 109.46875 * 60.00014 * 8 7 6 39 39 H 1.08999 * 109.46752 * 179.97438 * 8 7 6 40 40 H 1.08994 * 109.47175 * 300.00083 * 8 7 6 41 41 H 1.09002 * 109.47092 * 66.04128 * 9 7 6 42 42 H 1.09004 * 109.46939 * 186.04113 * 9 7 6 43 43 H 1.08999 * 109.46935 * 306.03770 * 9 7 6 44 44 H 0.96999 * 119.99951 * 337.60775 * 10 5 4 45 45 H 1.07997 * 119.78494 * 359.97438 * 12 11 10 46 46 H 1.07997 * 119.84086 * 180.02562 * 13 12 11 47 47 H 1.08003 * 120.05170 * 179.97438 * 14 13 12 48 48 H 0.97000 * 120.00104 * 180.02562 * 19 18 16 49 49 H 1.07994 * 120.16389 * 359.72087 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0852 -1.4393 2.4920 7 6 3.7970 -0.4834 3.6514 8 6 4.2131 -1.1400 4.9692 9 6 4.5887 0.8109 3.4540 10 7 3.9480 -1.6871 0.0627 11 6 5.2251 -1.5803 -0.4930 12 6 6.0958 -0.5869 -0.0496 13 6 7.3638 -0.4717 -0.5940 14 6 7.7781 -1.3381 -1.5807 15 6 6.9096 -2.3466 -2.0388 16 6 7.3283 -3.2403 -3.0514 17 1 8.3754 -3.4813 -3.1597 18 6 6.3859 -3.8124 -3.9133 19 7 5.1549 -3.3695 -3.9232 20 14 6.8855 -5.2083 -5.0495 21 1 6.5637 -6.5082 -4.4078 22 1 6.1450 -5.0923 -6.3314 23 1 8.3451 -5.1340 -5.3127 24 6 5.6235 -2.4606 -1.4821 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.9954 0.1612 1.0528 35 1 3.5862 -2.3912 2.6733 36 1 5.1602 -1.6016 2.4136 37 1 2.7312 -0.2567 3.6790 38 1 5.2789 -1.3667 4.9414 39 1 4.0082 -0.4589 5.7951 40 1 3.6491 -2.0621 5.1096 41 1 4.2177 1.3329 2.5720 42 1 4.4684 1.4476 4.3305 43 1 5.6441 0.5742 3.3191 44 1 3.3149 -2.3282 -0.2965 45 1 5.7794 0.0981 0.7230 46 1 8.0312 0.3015 -0.2430 47 1 8.7679 -1.2440 -2.0026 48 1 4.5015 -3.7663 -4.5203 49 1 4.9512 -3.2339 -1.8232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313413596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:06 Heat of formation + Delta-G solvation = -21.338122 kcal Electronic energy + Delta-G solvation = -23889.942594 eV Core-core repulsion = 20814.839010 eV Total energy + Delta-G solvation = -3075.103583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.87906 -37.07636 -35.55325 -34.14459 -33.02409 -30.12400 -29.36087 -27.23989 -26.99855 -26.71212 -26.14758 -25.08684 -22.03497 -20.79948 -20.18211 -19.82080 -18.94966 -17.18322 -16.00731 -15.28970 -15.10683 -14.95119 -14.53347 -14.25238 -14.12603 -13.68646 -13.55582 -12.90937 -12.80094 -12.42791 -12.24905 -12.18745 -12.16198 -12.10628 -11.94569 -11.69578 -11.49291 -11.35739 -11.18339 -11.03556 -10.89139 -10.69168 -10.65198 -10.61958 -10.42204 -10.22077 -10.16895 -9.97920 -9.52856 -9.37395 -9.15397 -8.66184 -7.19313 -6.61706 -6.05525 -4.26957 2.92086 3.13686 3.17748 3.28739 3.39028 4.03683 4.35513 4.80110 4.83934 4.96287 5.04392 5.08493 5.13261 5.14813 5.53986 5.55054 5.67131 5.67701 5.70522 5.73079 5.83198 5.88411 5.89373 5.93882 5.96079 6.03292 6.06375 6.11887 6.17234 6.20399 6.28163 6.34617 6.37558 6.46757 6.57112 6.59546 6.63319 6.74028 6.95245 7.19370 7.21630 7.47008 7.52867 7.89680 8.02739 8.17910 8.26122 8.57850 8.81072 8.92894 9.08511 9.19159 10.36812 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.004482 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.457660 B = 6245.279230 C = 7122.759398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.121 4.121 5 C 0.158 3.842 6 C -0.130 4.130 7 C -0.095 4.095 8 C -0.146 4.146 9 C -0.149 4.149 10 N -0.753 5.753 11 C 0.218 3.782 12 C -0.293 4.293 13 C -0.070 4.070 14 C -0.255 4.255 15 C 0.138 3.862 16 C -0.466 4.466 17 H 0.074 0.926 18 C 0.075 3.925 19 N -0.802 5.802 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.224 4.224 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.387 0.613 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.275 0.725 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 5.081 10.978 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.159 4.159 5 C 0.051 3.949 6 C -0.170 4.170 7 C -0.114 4.114 8 C -0.203 4.203 9 C -0.206 4.206 10 N -0.385 5.385 11 C 0.119 3.881 12 C -0.315 4.315 13 C -0.089 4.089 14 C -0.276 4.276 15 C 0.135 3.865 16 C -0.497 4.497 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.429 5.429 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.188 1.188 24 C -0.248 4.248 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.220 0.780 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.344 5.191 10.975 14.731 hybrid contribution -0.068 -0.868 -0.743 1.145 sum -8.412 4.323 10.231 13.933 Atomic orbital electron populations 1.21840 0.95890 1.01318 1.01217 1.21092 0.94777 0.96564 0.99148 1.21857 1.01742 0.95856 1.00883 1.21960 0.95506 1.00486 0.97942 1.20785 0.93050 0.95039 0.85977 1.22182 1.02420 0.98124 0.94225 1.21145 0.99802 0.95603 0.94860 1.21835 1.01560 1.00160 0.96779 1.21897 1.00723 0.96922 1.01086 1.44515 1.13474 1.44047 1.36481 1.17642 0.83913 0.94095 0.92476 1.19937 0.96467 1.05140 1.09996 1.20286 0.94831 0.97456 0.96365 1.20895 1.00679 1.00972 1.05020 1.17334 0.90698 0.89248 0.89266 1.19548 0.94582 1.23080 1.12476 0.90816 1.25828 0.94511 0.96406 0.97293 1.69841 1.03550 1.36298 1.33220 0.86344 0.79776 0.81455 0.79320 1.19634 1.20461 1.18756 1.20798 0.99792 1.03110 1.01107 0.93165 0.92987 0.92991 0.90357 0.92066 0.93133 0.93317 0.92083 0.91172 0.90341 0.92535 0.91136 0.91414 0.92708 0.93173 0.93014 0.92492 0.93309 0.92410 0.77956 0.89474 0.89843 0.89552 0.91445 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.10 -1.24 2.86 -90.62 -0.26 -1.50 16 3 C -0.15 -1.83 8.95 37.16 0.33 -1.50 16 4 C -0.12 -1.49 4.08 -26.73 -0.11 -1.60 16 5 C 0.16 2.33 1.50 -67.93 -0.10 2.23 16 6 C -0.13 -1.82 4.41 -26.73 -0.12 -1.94 16 7 C -0.10 -1.09 2.79 -90.62 -0.25 -1.34 16 8 C -0.15 -1.53 9.19 37.16 0.34 -1.18 16 9 C -0.15 -1.71 8.79 37.16 0.33 -1.38 16 10 N -0.75 -13.85 4.64 -52.22 -0.24 -14.09 16 11 C 0.22 4.96 6.59 -83.86 -0.55 4.40 16 12 C -0.29 -6.52 8.90 -39.08 -0.35 -6.87 16 13 C -0.07 -1.63 10.02 -39.69 -0.40 -2.03 16 14 C -0.26 -6.50 9.79 -38.83 -0.38 -6.88 16 15 C 0.14 3.76 5.55 -106.85 -0.59 3.17 16 16 C -0.47 -12.76 9.06 -37.74 -0.34 -13.10 16 17 H 0.07 1.96 7.87 -52.49 -0.41 1.54 16 18 C 0.08 1.95 5.26 -17.34 -0.09 1.85 16 19 N -0.80 -21.20 10.83 55.55 0.60 -20.59 16 20 Si 0.91 19.30 29.57 -169.99 -5.03 14.28 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.22 -5.84 8.49 -38.67 -0.33 -6.17 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.19 7.60 -51.93 -0.39 0.80 16 29 H 0.06 0.87 6.46 -51.93 -0.34 0.53 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.77 6.26 -51.93 -0.33 0.44 16 34 H 0.08 1.24 2.93 -51.93 -0.15 1.09 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.17 7.81 -51.93 -0.41 0.76 16 37 H 0.07 0.72 6.27 -51.93 -0.33 0.39 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.67 6.74 -51.93 -0.35 0.32 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.39 6.99 8.56 -40.82 -0.35 6.64 16 45 H 0.09 1.75 6.18 -52.49 -0.32 1.43 16 46 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 47 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 48 H 0.27 6.66 8.30 -40.82 -0.34 6.32 16 49 H 0.12 3.19 6.21 -52.49 -0.33 2.86 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -27.35 376.80 -10.28 -37.62 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -8.75 Total: 12.17 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: -2.53 Total: -35.06 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.36 Total: -34.69 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.35 -10.28 -37.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.286 kcal (2) G-P(sol) polarization free energy of solvation -27.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds