Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46951 * 2 1 4 4 C 1.52999 * 109.47127 * 119.99701 * 2 1 3 5 5 C 1.52997 * 109.47276 * 175.00176 * 4 2 1 6 6 C 1.53005 * 109.47527 * 175.00131 * 5 4 2 7 7 C 1.53006 * 109.46880 * 294.88199 * 6 5 4 8 8 C 1.53000 * 109.46787 * 175.40128 * 7 6 5 9 9 C 1.52998 * 109.46865 * 295.40265 * 7 6 5 10 10 N 1.46499 * 109.47191 * 295.00089 * 5 4 2 11 11 C 1.39683 * 120.00293 * 157.60849 * 10 5 4 12 12 C 1.39343 * 119.95024 * 354.79438 * 11 10 5 13 13 C 1.38475 * 120.42509 * 180.02562 * 12 11 10 14 14 C 1.37690 * 120.32454 * 0.02562 * 13 12 11 15 15 C 1.40751 * 119.89411 * 359.97438 * 14 13 12 16 16 C 1.41409 * 120.20777 * 180.02562 * 15 14 13 17 17 H 1.07990 * 119.99953 * 28.56096 * 16 15 14 18 18 C 1.39934 * 119.99885 * 208.56495 * 16 15 14 19 19 N 1.30831 * 120.00059 * 10.63020 * 18 16 15 20 20 Si 1.86796 * 119.99969 * 190.62952 * 18 16 15 21 21 H 1.48498 * 109.46979 * 94.99055 * 20 18 16 22 22 H 1.48497 * 109.47168 * 214.99105 * 20 18 16 23 23 H 1.48498 * 109.47060 * 334.98804 * 20 18 16 24 24 C 1.38277 * 119.95324 * 174.77839 * 11 10 5 25 25 H 1.08997 * 109.47275 * 299.99601 * 1 2 3 26 26 H 1.08995 * 109.47156 * 60.00783 * 1 2 3 27 27 H 1.09002 * 109.46667 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47516 * 239.99733 * 2 1 3 29 29 H 1.09002 * 109.47363 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47287 * 299.99630 * 3 2 1 31 31 H 1.09000 * 109.47659 * 59.99853 * 3 2 1 32 32 H 1.09007 * 109.47212 * 55.00379 * 4 2 1 33 33 H 1.09002 * 109.47151 * 295.00337 * 4 2 1 34 34 H 1.08998 * 109.47283 * 55.00104 * 5 4 2 35 35 H 1.08999 * 109.46802 * 54.87701 * 6 5 4 36 36 H 1.08997 * 109.47220 * 174.88471 * 6 5 4 37 37 H 1.08997 * 109.46726 * 55.40138 * 7 6 5 38 38 H 1.08998 * 109.46875 * 60.00014 * 8 7 6 39 39 H 1.08999 * 109.46752 * 179.97438 * 8 7 6 40 40 H 1.08994 * 109.47175 * 300.00083 * 8 7 6 41 41 H 1.09002 * 109.47092 * 66.04128 * 9 7 6 42 42 H 1.09004 * 109.46939 * 186.04113 * 9 7 6 43 43 H 1.08999 * 109.46935 * 306.03770 * 9 7 6 44 44 H 0.96999 * 119.99951 * 337.60775 * 10 5 4 45 45 H 1.07997 * 119.78494 * 359.97438 * 12 11 10 46 46 H 1.07997 * 119.84086 * 180.02562 * 13 12 11 47 47 H 1.08003 * 120.05170 * 179.97438 * 14 13 12 48 48 H 0.97000 * 120.00104 * 180.02562 * 19 18 16 49 49 H 1.07994 * 120.16389 * 359.72087 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0852 -1.4393 2.4920 7 6 3.7970 -0.4834 3.6514 8 6 4.2131 -1.1400 4.9692 9 6 4.5887 0.8109 3.4540 10 7 3.9480 -1.6871 0.0627 11 6 5.2251 -1.5803 -0.4930 12 6 6.0958 -0.5869 -0.0496 13 6 7.3638 -0.4717 -0.5940 14 6 7.7781 -1.3381 -1.5807 15 6 6.9096 -2.3466 -2.0388 16 6 7.3283 -3.2403 -3.0514 17 1 8.3754 -3.4813 -3.1597 18 6 6.3859 -3.8124 -3.9133 19 7 5.1549 -3.3695 -3.9232 20 14 6.8855 -5.2083 -5.0495 21 1 6.5637 -6.5082 -4.4078 22 1 6.1450 -5.0923 -6.3314 23 1 8.3451 -5.1340 -5.3127 24 6 5.6235 -2.4606 -1.4821 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.9954 0.1612 1.0528 35 1 3.5862 -2.3912 2.6733 36 1 5.1602 -1.6016 2.4136 37 1 2.7312 -0.2567 3.6790 38 1 5.2789 -1.3667 4.9414 39 1 4.0082 -0.4589 5.7951 40 1 3.6491 -2.0621 5.1096 41 1 4.2177 1.3329 2.5720 42 1 4.4684 1.4476 4.3305 43 1 5.6441 0.5742 3.3191 44 1 3.3149 -2.3282 -0.2965 45 1 5.7794 0.0981 0.7230 46 1 8.0312 0.3015 -0.2430 47 1 8.7679 -1.2440 -2.0026 48 1 4.5015 -3.7663 -4.5203 49 1 4.9512 -3.2339 -1.8232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313413596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = -32.721376 kcal Electronic energy + Delta-G solvation = -23890.436209 eV Core-core repulsion = 20814.839010 eV Total energy + Delta-G solvation = -3075.597198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.26890 -38.70864 -36.51674 -35.81771 -34.74248 -31.50384 -31.30442 -28.40857 -28.12257 -27.85997 -27.32256 -26.91649 -23.44621 -22.55915 -21.57471 -21.08587 -20.11988 -19.03504 -17.71177 -16.72233 -16.57135 -16.20471 -16.12000 -15.70429 -15.17968 -14.83097 -14.76588 -14.45424 -14.27839 -13.99962 -13.67605 -13.49269 -13.30892 -13.13836 -13.03859 -12.93378 -12.83261 -12.77092 -12.65039 -12.46931 -12.30611 -12.11453 -11.87133 -11.66093 -11.62801 -11.49395 -11.46206 -11.38292 -11.12004 -11.05448 -11.00001 -10.34055 -9.16825 -8.54949 -7.81078 -6.32142 1.11034 1.36444 1.38006 1.50943 1.58829 2.24312 2.85580 2.90603 3.76691 3.86790 3.96654 4.04434 4.13956 4.15677 4.20864 4.43438 4.49682 4.55327 4.67519 4.73762 4.80639 4.83052 4.84489 4.87979 4.94414 4.98946 5.02198 5.03836 5.08205 5.10496 5.13975 5.17770 5.22467 5.25108 5.34123 5.36072 5.42696 5.47690 5.50246 5.53304 5.56973 5.63540 5.67986 6.01175 6.14296 6.25565 6.32058 6.63537 6.99429 7.09301 7.13897 7.30995 8.44631 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.004482 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.457660 B = 6245.279230 C = 7122.759398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.112 4.112 5 C 0.156 3.844 6 C -0.124 4.124 7 C -0.089 4.089 8 C -0.145 4.145 9 C -0.149 4.149 10 N -0.746 5.746 11 C 0.227 3.773 12 C -0.291 4.291 13 C -0.068 4.068 14 C -0.284 4.284 15 C 0.107 3.893 16 C -0.506 4.506 17 H 0.068 0.932 18 C 0.034 3.966 19 N -0.831 5.831 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.252 4.252 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.388 0.612 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.087 0.913 48 H 0.282 0.718 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.743 5.839 12.619 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.150 4.150 5 C 0.051 3.949 6 C -0.163 4.163 7 C -0.108 4.108 8 C -0.202 4.202 9 C -0.207 4.207 10 N -0.376 5.376 11 C 0.125 3.875 12 C -0.314 4.314 13 C -0.086 4.086 14 C -0.304 4.304 15 C 0.104 3.896 16 C -0.536 4.536 17 H 0.086 0.914 18 C -0.179 4.179 19 N -0.458 5.458 20 Si 0.802 3.198 21 H -0.188 1.188 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.277 4.277 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.221 0.779 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.974 5.966 12.651 17.179 hybrid contribution 0.372 -1.005 -1.148 1.571 sum -9.601 4.961 11.502 15.783 Atomic orbital electron populations 1.21789 0.94026 1.01812 1.02151 1.21057 0.96336 0.96343 0.97879 1.21838 1.00340 0.95944 1.02007 1.21916 0.93096 1.01184 0.98769 1.21006 0.95104 0.93873 0.84891 1.22090 1.00335 0.98986 0.94879 1.21121 1.00851 0.94814 0.93988 1.21826 1.00914 1.00747 0.96753 1.21900 0.99688 0.97183 1.01883 1.44653 1.11811 1.44182 1.36968 1.17714 0.85523 0.92994 0.91272 1.20229 0.96080 1.05002 1.10045 1.20639 0.95557 0.97253 0.95175 1.21032 1.00848 1.01902 1.06644 1.17714 0.91784 0.90132 0.89949 1.19790 0.94858 1.25015 1.13977 0.91377 1.26659 0.94244 0.98482 0.98494 1.69915 1.04519 1.37357 1.34031 0.85225 0.79429 0.77889 0.77297 1.18843 1.19298 1.18492 1.20712 0.99615 1.04280 1.03071 0.91309 0.92990 0.92760 0.93667 0.94155 0.93227 0.91026 0.91626 0.88607 0.90959 0.92500 0.94100 0.89598 0.93810 0.91395 0.92617 0.92805 0.91356 0.93973 0.77906 0.86988 0.86726 0.89500 0.90782 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.19 71.98 0.66 -2.03 16 2 C -0.10 -2.33 2.86 -10.79 -0.03 -2.36 16 3 C -0.14 -3.35 8.95 71.98 0.64 -2.71 16 4 C -0.11 -2.49 4.08 30.59 0.12 -2.36 16 5 C 0.16 4.42 1.50 44.99 0.07 4.49 16 6 C -0.12 -3.29 4.41 30.60 0.13 -3.15 16 7 C -0.09 -1.78 2.79 -10.79 -0.03 -1.81 16 8 C -0.15 -2.65 9.19 71.98 0.66 -1.99 16 9 C -0.15 -3.04 8.79 71.98 0.63 -2.41 16 10 N -0.75 -27.66 4.64 -319.11 -1.48 -29.14 16 11 C 0.23 10.55 6.59 38.17 0.25 10.80 16 12 C -0.29 -12.93 8.90 22.59 0.20 -12.73 16 13 C -0.07 -3.13 10.02 22.20 0.22 -2.91 16 14 C -0.28 -14.94 9.79 22.75 0.22 -14.72 16 15 C 0.11 6.14 5.55 -21.31 -0.12 6.02 16 16 C -0.51 -29.01 9.06 23.46 0.21 -28.80 16 17 H 0.07 3.81 7.87 -2.92 -0.02 3.79 16 18 C 0.03 1.82 5.26 85.25 0.45 2.27 16 19 N -0.83 -45.44 10.83 21.82 0.24 -45.20 16 20 Si 0.98 40.41 29.57 68.60 2.03 42.44 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 C -0.25 -13.77 8.49 22.86 0.19 -13.58 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 1.38 7.60 -2.39 -0.02 1.36 16 29 H 0.04 1.09 6.46 -2.39 -0.02 1.08 16 30 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.10 1.70 6.26 -2.39 -0.01 1.68 16 34 H 0.07 2.19 2.93 -2.39 -0.01 2.18 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.33 7.81 -2.39 -0.02 1.31 16 37 H 0.09 1.45 6.27 -2.39 -0.01 1.44 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 1.12 6.74 -2.39 -0.02 1.11 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.39 14.29 8.56 -92.71 -0.79 13.50 16 45 H 0.11 4.37 6.18 -2.91 -0.02 4.36 16 46 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 47 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 48 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 49 H 0.10 5.66 6.21 -2.91 -0.02 5.64 16 Total: -1.00 -61.91 376.80 5.40 -56.51 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: 0.11 Total: 43.37 kcal Atomic # 6 Polarization: -72.48 SS G_CDS: 4.50 Total: -67.98 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -1.25 Total: -74.34 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -61.91 5.40 -56.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313413596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.786 kcal (2) G-P(sol) polarization free energy of solvation -61.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds