Wall clock time and date at job start Tue Mar 31 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46928 * 2 1 4 4 N 1.46502 * 109.47028 * 179.97438 * 3 2 1 5 5 C 1.36840 * 120.00182 * 270.00395 * 4 3 2 6 6 H 1.08004 * 120.00008 * 137.65058 * 5 4 3 7 7 C 1.39050 * 119.99952 * 317.64321 * 5 4 3 8 8 N 1.31362 * 119.99843 * 339.30710 * 7 5 4 9 9 Si 1.86801 * 119.99774 * 159.30409 * 7 5 4 10 10 H 1.48500 * 109.46848 * 60.00309 * 9 7 5 11 11 H 1.48497 * 109.47103 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47252 * 300.00486 * 9 7 5 13 13 C 1.34782 * 119.99521 * 90.00097 * 4 3 2 14 14 O 1.21687 * 120.00619 * 354.64941 * 13 4 3 15 15 C 1.46861 * 119.99751 * 174.64632 * 13 4 3 16 16 S 1.77228 * 127.76058 * 353.33923 * 15 13 4 17 17 N 1.69668 * 95.30900 * 179.97438 * 16 15 13 18 18 C 1.30341 * 107.68554 * 0.33470 * 17 16 15 19 19 O 1.35967 * 120.82924 * 179.76789 * 18 17 16 20 20 C 1.37673 * 118.34168 * 359.74088 * 18 17 16 21 21 Cl 1.73601 * 122.90492 * 180.02562 * 20 18 17 22 22 H 1.09004 * 109.46727 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46972 * 299.99532 * 1 2 3 24 24 H 1.09001 * 109.46916 * 59.99961 * 1 2 3 25 25 H 1.09007 * 109.47304 * 240.00401 * 2 1 3 26 26 H 1.09001 * 109.47486 * 120.00545 * 2 1 3 27 27 H 1.08994 * 109.46912 * 60.00431 * 3 2 1 28 28 H 1.08993 * 109.47040 * 299.99821 * 3 2 1 29 29 H 0.97002 * 119.99896 * 185.02409 * 8 7 5 30 30 H 0.96703 * 114.00115 * 269.97661 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1887 1.4427 1.1860 6 1 5.0573 0.8126 1.3084 7 6 3.7653 2.2541 2.2328 8 7 2.9987 3.2928 1.9899 9 14 4.2864 1.8669 3.9843 10 1 5.7679 1.9027 4.0793 11 1 3.7072 2.8755 4.9075 12 1 3.7990 0.5150 4.3584 13 6 4.1793 1.4424 -1.1664 14 8 3.5753 1.3440 -2.2182 15 6 5.6431 1.5611 -1.1686 16 16 6.7085 1.8757 0.2123 17 7 8.1462 1.8433 -0.6881 18 6 7.8292 1.6192 -1.9324 19 8 8.7883 1.5446 -2.8933 20 6 6.4990 1.4594 -2.2494 21 17 5.9447 1.1559 -3.8662 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 2.7631 3.9003 2.7085 30 1 8.9944 2.3926 -3.3099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330452632.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:51 Heat of formation + Delta-G solvation = -37.973075 kcal Electronic energy + Delta-G solvation = -19021.444293 eV Core-core repulsion = 15777.181096 eV Total energy + Delta-G solvation = -3244.263197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.29349 -38.63799 -36.06206 -35.42779 -34.91178 -33.18110 -31.73385 -30.33756 -26.45684 -25.55352 -23.92676 -21.51148 -20.37204 -19.36655 -18.25839 -17.54905 -17.04710 -16.04350 -15.23011 -15.02548 -14.68337 -14.04961 -13.99080 -13.73861 -13.19666 -12.87840 -12.40723 -12.06550 -11.81746 -11.74364 -11.46663 -11.27119 -11.18569 -11.09842 -10.91917 -10.70312 -10.57546 -10.17095 -9.95390 -9.87972 -9.38367 -8.85164 -8.80311 -8.02334 -7.74300 -6.85783 -4.54807 0.73302 1.66125 2.09190 2.46550 2.92816 2.99946 3.01523 3.03576 3.72316 4.00087 4.07302 4.52337 4.72927 5.39673 5.64811 5.67257 5.74241 5.88903 6.05612 6.32699 6.42827 6.47442 6.64204 6.84244 6.89844 6.91942 7.14012 7.52311 7.59196 7.90592 8.58366 9.06339 9.52756 10.12349 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.007741 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.478565 B = 3616.392805 C = 5075.100115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.122 3.878 4 N -0.415 5.415 5 C -0.349 4.349 6 H 0.100 0.900 7 C 0.066 3.934 8 N -0.821 5.821 9 Si 0.909 3.091 10 H -0.260 1.260 11 H -0.276 1.276 12 H -0.263 1.263 13 C 0.527 3.473 14 O -0.570 6.570 15 C -0.148 4.148 16 S 0.397 5.603 17 N -0.539 5.539 18 C 0.296 3.704 19 O -0.469 6.469 20 C -0.117 4.117 21 Cl -0.017 7.017 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.283 0.717 30 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -1.068 -0.849 2.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.132 5.132 5 C -0.485 4.485 6 H 0.117 0.883 7 C -0.148 4.148 8 N -0.453 5.453 9 Si 0.733 3.267 10 H -0.184 1.184 11 H -0.201 1.201 12 H -0.187 1.187 13 C 0.315 3.685 14 O -0.455 6.455 15 C -0.281 4.281 16 S 0.553 5.447 17 N -0.371 5.371 18 C 0.080 3.920 19 O -0.275 6.275 20 C -0.163 4.163 21 Cl 0.012 6.988 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.254 -1.188 0.588 2.614 hybrid contribution -0.212 0.091 -1.057 1.082 sum 2.041 -1.097 -0.469 2.364 Atomic orbital electron populations 1.21656 0.96288 1.00729 1.01453 1.21837 0.94926 0.98785 1.01866 1.21456 0.80068 0.95236 1.03377 1.43360 1.05332 1.60616 1.03932 1.19508 1.13579 1.25512 0.89888 0.88323 1.25578 0.95157 0.93160 1.00952 1.69847 1.31251 1.09350 1.34857 0.86222 0.80289 0.79419 0.80758 1.18402 1.20074 1.18730 1.16908 0.83376 0.83280 0.84900 1.90735 1.67797 1.55946 1.31012 1.26018 1.00092 1.05046 0.96947 1.86171 0.87096 1.62072 1.09352 1.76272 1.28414 1.24537 1.07844 1.18582 0.85857 1.00391 0.87166 1.84889 1.56336 1.35655 1.50602 1.21163 0.91990 1.13685 0.89498 1.98336 1.89316 1.94115 1.17052 0.93402 0.92966 0.93006 0.92428 0.91984 0.88428 0.91944 0.90630 0.74985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.14 -2.51 6.26 -26.73 -0.17 -2.68 16 3 C 0.12 2.60 4.97 -4.04 -0.02 2.58 16 4 N -0.42 -9.58 2.47 -116.24 -0.29 -9.87 16 5 C -0.35 -7.78 6.91 -15.02 -0.10 -7.89 16 6 H 0.10 2.14 5.79 -41.25 -0.24 1.90 16 7 C 0.07 1.44 4.93 -17.45 -0.09 1.35 16 8 N -0.82 -18.74 11.77 55.50 0.65 -18.09 16 9 Si 0.91 16.84 29.61 -169.99 -5.03 11.81 16 10 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 11 H -0.28 -5.08 7.11 56.52 0.40 -4.67 16 12 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 13 C 0.53 12.55 7.60 -12.77 -0.10 12.45 16 14 O -0.57 -14.41 15.12 5.20 0.08 -14.33 16 15 C -0.15 -3.23 6.47 -36.10 -0.23 -3.46 16 16 S 0.40 7.88 19.76 -107.50 -2.12 5.76 16 17 N -0.54 -10.59 12.07 29.23 0.35 -10.24 16 18 C 0.30 5.60 7.67 -18.39 -0.14 5.45 16 19 O -0.47 -7.47 13.27 -19.64 -0.26 -7.73 16 20 C -0.12 -2.37 6.41 -39.79 -0.26 -2.62 16 21 Cl -0.02 -0.32 27.29 -51.86 -1.42 -1.73 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.10 2.15 5.86 -51.93 -0.30 1.85 16 28 H 0.06 1.39 7.50 -51.93 -0.39 1.00 16 29 H 0.28 6.03 8.32 -40.82 -0.34 5.69 16 30 H 0.39 4.25 9.06 45.56 0.41 4.66 16 LS Contribution 291.04 15.07 4.39 4.39 Total: -1.00 -26.50 291.04 -6.15 -32.66 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -1.77 Total: 3.99 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.74 Total: 3.38 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.72 Total: -38.19 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.18 Total: -22.06 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 7.88 SS G_CDS: -2.12 Total: 5.76 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.42 Total: -1.73 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.50 -6.15 -32.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330452632.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.316 kcal (2) G-P(sol) polarization free energy of solvation -26.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds