Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99975 * 2 1 4 4 C 1.50703 * 109.47336 * 66.04858 * 3 2 1 5 5 H 1.07994 * 119.99685 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99953 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00025 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00006 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46837 * 90.00187 * 8 6 4 10 10 H 1.48497 * 109.47303 * 209.99639 * 8 6 4 11 11 H 1.48493 * 109.47270 * 329.99880 * 8 6 4 12 12 C 1.46901 * 110.99764 * 236.04348 * 2 1 3 13 13 C 1.50697 * 109.47062 * 293.95386 * 12 2 1 14 14 N 1.29003 * 124.90278 * 90.00190 * 13 12 2 15 15 C 1.31814 * 117.13230 * 179.97438 * 14 13 12 16 16 C 1.33732 * 114.47119 * 0.02562 * 15 14 13 17 17 Br 1.89096 * 126.04289 * 179.97438 * 16 15 14 18 18 S 1.70970 * 124.90848 * 269.99895 * 13 12 2 19 19 H 1.08997 * 109.47788 * 183.95752 * 1 2 3 20 20 H 1.09004 * 109.47371 * 303.95494 * 1 2 3 21 21 H 1.08998 * 109.47431 * 63.95182 * 1 2 3 22 22 H 1.08999 * 109.46708 * 186.04482 * 3 2 1 23 23 H 1.08995 * 109.47150 * 306.04219 * 3 2 1 24 24 H 0.97001 * 119.99799 * 180.02562 * 7 6 4 25 25 H 1.09000 * 109.46639 * 173.95650 * 12 2 1 26 26 H 1.08995 * 109.46994 * 53.95615 * 12 2 1 27 27 H 1.08001 * 122.76665 * 179.72786 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0268 3.3494 1.5284 7 7 2.7120 4.0018 0.6149 8 14 1.5819 4.1873 3.1377 9 1 2.6586 3.9513 4.1327 10 1 1.4294 5.6468 2.9102 11 1 0.3042 3.6299 3.6492 12 6 1.9954 -0.7660 -1.1376 13 6 1.6369 -2.2204 -0.9728 14 7 0.5586 -2.7701 -1.4193 15 6 0.4001 -4.0580 -1.1881 16 6 1.4015 -4.6260 -0.5076 17 35 1.5113 -6.4443 -0.0002 18 16 2.6003 -3.3804 -0.1670 19 1 -0.3634 -1.0251 0.0709 20 1 -0.3634 0.5740 0.8524 21 1 -0.3634 0.4513 -0.9232 22 1 3.0797 1.3443 -0.1082 23 1 1.5612 1.9273 -0.8309 24 1 2.9866 4.9180 0.7768 25 1 3.0797 -0.6612 -1.1755 26 1 1.5611 -0.3873 -2.0627 27 1 -0.4691 -4.6083 -1.5168 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336654488.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = 52.620410 kcal Electronic energy + Delta-G solvation = -13141.899811 eV Core-core repulsion = 10687.137357 eV Total energy + Delta-G solvation = -2454.762454 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74629 -36.60541 -32.85040 -32.20577 -29.95681 -27.39808 -27.01032 -24.80658 -23.13440 -20.67482 -19.62716 -18.08829 -16.41332 -15.56303 -15.29936 -14.70985 -14.35321 -13.85908 -13.68636 -13.31097 -12.37527 -11.97649 -11.88623 -11.58428 -11.47048 -11.11084 -10.93618 -10.71283 -10.54604 -10.52378 -9.98644 -9.61527 -9.30444 -9.19129 -8.82652 -8.48288 -7.43983 -6.08081 -4.09610 0.51292 0.84585 1.54088 1.81156 2.72665 3.30122 3.36182 3.39913 4.17484 4.40095 4.99155 5.07339 5.18898 5.28681 5.62923 5.86535 6.02793 6.18010 6.34292 6.75383 7.13137 7.22858 7.65292 7.69602 7.94196 8.06738 8.41459 8.97271 9.54751 11.02787 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.042289 B = 0.003592 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.955090 B = 7793.161594 C = 7995.075691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.534 5.534 3 C 0.194 3.806 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.119 3.881 13 C 0.092 3.908 14 N -0.476 5.476 15 C 0.089 3.911 16 C -0.275 4.275 17 Br 0.014 6.986 18 S 0.202 5.798 19 H 0.048 0.952 20 H 0.076 0.924 21 H 0.017 0.983 22 H 0.033 0.967 23 H -0.004 1.004 24 H 0.262 0.738 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -20.437 -3.502 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.260 5.260 3 C 0.069 3.931 4 C -0.547 4.547 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.013 4.013 13 C -0.186 4.186 14 N -0.192 5.192 15 C -0.068 4.068 16 C -0.476 4.476 17 Br 0.096 6.904 18 S 0.457 5.543 19 H 0.067 0.933 20 H 0.094 0.906 21 H 0.035 0.965 22 H 0.051 0.949 23 H 0.014 0.986 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.325 -20.744 -2.691 20.921 hybrid contribution -1.312 0.792 -0.299 1.562 sum -1.637 -19.952 -2.990 20.242 Atomic orbital electron populations 1.22242 0.87921 1.00103 1.00793 1.62224 1.08005 1.18161 1.37604 1.19792 0.95502 0.80622 0.97196 1.21108 1.35100 0.96947 1.01543 0.91753 1.24979 0.95231 0.97267 0.97069 1.69952 1.38222 1.11543 1.33998 0.86469 0.78902 0.78420 0.83457 1.20571 1.21287 1.19844 1.20767 1.00928 0.84059 0.95553 1.27482 0.92679 1.02016 0.96425 1.66551 1.20197 1.09361 1.23063 1.21854 0.98714 0.89599 0.96608 1.27729 1.05405 0.98003 1.16451 1.96663 1.98363 1.04213 1.91126 1.84169 1.21263 0.97424 1.51493 0.93331 0.90564 0.96475 0.94916 0.98576 0.92834 0.88785 0.92022 0.80512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.17 60.07 0.55 1.31 15 2 N -0.53 -11.27 4.74 -245.83 -1.17 -12.44 15 3 C 0.19 4.86 4.72 -4.98 -0.02 4.83 15 4 C -0.51 -13.95 8.46 -34.44 -0.29 -14.24 15 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 15 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 15 7 N -0.90 -26.07 13.29 55.43 0.74 -25.33 15 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 15 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 12 C 0.12 2.06 5.54 -4.98 -0.03 2.04 15 13 C 0.09 1.45 6.04 -13.47 -0.08 1.37 15 14 N -0.48 -7.48 9.76 -11.84 -0.12 -7.59 15 15 C 0.09 1.17 11.30 -19.14 -0.22 0.96 15 16 C -0.27 -3.50 7.08 29.15 0.21 -3.29 15 17 Br 0.01 0.15 34.09 -68.01 -2.32 -2.17 15 18 S 0.20 2.76 23.18 -107.50 -2.49 0.27 15 19 H 0.05 0.91 6.70 -51.93 -0.35 0.56 15 20 H 0.08 1.62 6.76 -51.93 -0.35 1.27 15 21 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 22 H 0.03 0.86 7.93 -51.93 -0.41 0.44 15 23 H 0.00 -0.10 8.12 -51.93 -0.42 -0.52 15 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 25 H 0.09 1.51 7.93 -51.93 -0.41 1.10 15 26 H 0.06 1.07 8.12 -51.93 -0.42 0.65 15 27 H 0.18 1.87 8.06 -52.49 -0.42 1.45 15 LS Contribution 270.89 15.07 4.08 4.08 Total: -1.00 -28.81 270.89 -8.99 -37.81 By element: Atomic # 1 Polarization: -2.66 SS G_CDS: -2.72 Total: -5.38 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 0.02 Total: -5.56 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.55 Total: -45.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.49 Total: 0.27 kcal Atomic # 35 Polarization: 0.15 SS G_CDS: -2.32 Total: -2.17 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.81 -8.99 -37.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336654488.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.430 kcal (2) G-P(sol) polarization free energy of solvation -28.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds