Wall clock time and date at job start Tue Mar 31 2020 06:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46926 * 270.00348 * 3 2 1 5 5 H 1.48506 * 109.46987 * 29.99634 * 3 2 1 6 6 H 1.48494 * 109.47527 * 150.00120 * 3 2 1 7 7 C 1.37883 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99815 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00023 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.39829 * 110.99626 * 180.02562 * 10 9 7 12 12 C 1.38960 * 120.08645 * 299.72322 * 11 10 9 13 13 Cl 1.73598 * 120.03577 * 0.02562 * 12 11 10 14 14 C 1.38222 * 119.91912 * 179.72914 * 12 11 10 15 15 C 1.38274 * 120.08083 * 0.57159 * 14 12 11 16 16 N 1.48024 * 119.92039 * 179.72473 * 15 14 12 17 17 O 1.21801 * 120.00444 * 179.97438 * 16 15 14 18 18 O 1.21802 * 119.99976 * 359.97438 * 16 15 14 19 19 C 1.38279 * 120.16377 * 359.70428 * 15 14 12 20 20 C 1.38224 * 120.08308 * 0.02562 * 19 15 14 21 21 Cl 1.73595 * 120.04237 * 180.02562 * 20 19 15 22 22 H 0.96999 * 120.00132 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 24 24 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 25 25 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 26 26 H 1.07997 * 119.95627 * 180.29989 * 14 12 11 27 27 H 1.08007 * 119.95999 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.3990 -2.6162 0.0001 12 6 6.1113 -2.0389 -1.0441 13 17 5.2667 -1.2694 -2.3510 14 6 7.4931 -2.0728 -1.0377 15 6 8.1664 -2.6905 0.0000 16 7 9.6461 -2.7300 0.0002 17 8 10.2408 -3.2734 0.9138 18 8 10.2691 -2.2192 -0.9134 19 6 7.4609 -3.2711 1.0380 20 6 6.0791 -3.2363 1.0413 21 17 5.1946 -3.9649 2.3452 22 1 -0.4850 0.8400 0.0004 23 1 3.8751 -0.6796 0.8895 24 1 3.8746 -0.6808 -0.8904 25 1 3.6260 -3.0952 0.7817 26 1 8.0473 -1.6200 -1.8465 27 1 7.9903 -3.7524 1.8471 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336677733.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:56 Heat of formation + Delta-G solvation = 15.744295 kcal Electronic energy + Delta-G solvation = -18133.884252 eV Core-core repulsion = 14754.073614 eV Total energy + Delta-G solvation = -3379.810638 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 290.001 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.24917 -40.13499 -37.05545 -36.62268 -36.55213 -36.06201 -32.86791 -31.25345 -30.73761 -27.90652 -25.54041 -23.73297 -22.50200 -21.52298 -19.59976 -18.84185 -17.86093 -17.60888 -16.67130 -16.24341 -15.80064 -14.98766 -14.81593 -14.26717 -13.92998 -13.69467 -13.38722 -12.70466 -12.40834 -12.32067 -11.65669 -11.57807 -11.54765 -11.24821 -11.21674 -11.16467 -11.08190 -10.88494 -10.10637 -9.86764 -9.55051 -9.25687 -8.80028 -8.12573 -6.32754 -4.34953 -0.28529 0.44128 1.08521 1.16604 1.73390 2.01972 2.80780 3.10175 3.17335 3.19638 3.85611 4.17226 4.28737 4.29760 4.52569 4.61346 4.99079 5.12967 5.27565 5.33424 5.58756 6.18298 6.28311 6.42045 6.91329 7.19729 7.45855 7.57539 8.21826 8.70014 9.24353 10.79412 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.005659 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.135036 B = 4947.026239 C = 5792.709030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.867 3.133 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.084 0.916 9 C 0.148 3.852 10 N -0.600 5.600 11 C 0.213 3.787 12 C -0.070 4.070 13 Cl -0.007 7.007 14 C -0.012 4.012 15 C -0.079 4.079 16 N 0.043 4.957 17 O -0.167 6.167 18 O -0.165 6.165 19 C -0.008 4.008 20 C -0.104 4.104 21 Cl -0.026 7.026 22 H 0.269 0.731 23 H 0.008 0.992 24 H 0.059 0.941 25 H 0.370 0.630 26 H 0.166 0.834 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.582 -4.891 0.778 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.693 3.307 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.102 0.898 9 C 0.025 3.975 10 N -0.219 5.219 11 C 0.102 3.898 12 C -0.101 4.101 13 Cl 0.022 6.978 14 C -0.033 4.033 15 C -0.165 4.165 16 N 0.560 4.440 17 O -0.381 6.381 18 O -0.379 6.379 19 C -0.029 4.029 20 C -0.135 4.135 21 Cl 0.003 6.997 22 H 0.079 0.921 23 H 0.026 0.974 24 H 0.077 0.923 25 H 0.196 0.804 26 H 0.183 0.817 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.281 -4.787 0.121 13.182 hybrid contribution 0.632 0.938 0.756 1.361 sum 12.914 -3.849 0.877 13.504 Atomic orbital electron populations 1.69854 1.06097 1.27403 1.49064 1.24774 0.94738 0.98771 0.94109 0.86975 0.80466 0.84036 0.79186 1.19540 1.20572 1.19002 1.20803 0.87533 0.95415 1.53103 0.89767 1.20758 0.98278 0.80302 0.98142 1.57394 0.99742 1.18683 1.46121 1.19104 0.92008 0.89402 0.89261 1.20019 0.90898 1.05593 0.93595 1.98416 1.76282 1.78491 1.44586 1.20706 0.92249 0.93528 0.96799 1.20342 0.79717 1.14516 1.01944 1.43302 1.03021 0.98037 0.99637 1.94532 1.69939 1.44578 1.29014 1.94539 1.67607 1.46767 1.29026 1.20633 0.91915 0.93674 0.96691 1.20568 0.91588 1.08625 0.92768 1.98405 1.74539 1.81004 1.45742 0.92123 0.97430 0.92332 0.80412 0.81651 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.96 55.43 0.77 -24.61 15 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 15 3 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 6 H -0.27 -5.80 6.54 56.52 0.37 -5.43 15 7 C -0.53 -13.71 9.87 -34.44 -0.34 -14.05 15 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 15 9 C 0.15 3.16 4.06 -4.98 -0.02 3.14 15 10 N -0.60 -10.90 6.31 -59.46 -0.38 -11.28 15 11 C 0.21 3.29 5.77 -83.67 -0.48 2.81 15 12 C -0.07 -1.02 6.14 -39.32 -0.24 -1.26 15 13 Cl -0.01 -0.11 25.41 -51.86 -1.32 -1.43 15 14 C -0.01 -0.15 9.33 -39.57 -0.37 -0.52 15 15 C -0.08 -1.02 6.85 -79.91 -0.55 -1.56 15 16 N 0.04 0.59 4.45 33.98 0.15 0.74 15 17 O -0.17 -2.36 18.44 -29.46 -0.54 -2.90 15 18 O -0.16 -2.36 18.44 -29.46 -0.54 -2.91 15 19 C -0.01 -0.10 9.33 -39.57 -0.37 -0.47 15 20 C -0.10 -1.38 6.34 -39.32 -0.25 -1.63 15 21 Cl -0.03 -0.32 27.21 -51.86 -1.41 -1.73 15 22 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 23 H 0.01 0.17 7.20 -51.93 -0.37 -0.20 15 24 H 0.06 1.24 4.15 -51.93 -0.22 1.02 15 25 H 0.37 6.42 6.70 -39.29 -0.26 6.16 15 26 H 0.17 1.79 7.60 -52.49 -0.40 1.39 15 27 H 0.16 1.65 7.60 -52.48 -0.40 1.25 15 LS Contribution 275.23 15.07 4.15 4.15 Total: -1.00 -27.23 275.23 -7.74 -34.97 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -1.24 Total: 1.32 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.72 Total: -11.49 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.55 Total: -35.14 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -1.09 Total: -5.81 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -2.73 Total: -3.16 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.23 -7.74 -34.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336677733.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.718 kcal (2) G-P(sol) polarization free energy of solvation -27.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds