Wall clock time and date at job start Tue Mar 31 2020 06:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46926 * 270.00348 * 3 2 1 5 5 H 1.48506 * 109.46987 * 29.99634 * 3 2 1 6 6 H 1.48494 * 109.47527 * 150.00120 * 3 2 1 7 7 C 1.37883 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99815 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00023 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.39829 * 110.99626 * 180.02562 * 10 9 7 12 12 C 1.38960 * 120.08645 * 299.72322 * 11 10 9 13 13 Cl 1.73598 * 120.03577 * 0.02562 * 12 11 10 14 14 C 1.38222 * 119.91912 * 179.72914 * 12 11 10 15 15 C 1.38274 * 120.08083 * 0.57159 * 14 12 11 16 16 N 1.48024 * 119.92039 * 179.72473 * 15 14 12 17 17 O 1.21801 * 120.00444 * 179.97438 * 16 15 14 18 18 O 1.21802 * 119.99976 * 359.97438 * 16 15 14 19 19 C 1.38279 * 120.16377 * 359.70428 * 15 14 12 20 20 C 1.38224 * 120.08308 * 0.02562 * 19 15 14 21 21 Cl 1.73595 * 120.04237 * 180.02562 * 20 19 15 22 22 H 0.96999 * 120.00132 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 24 24 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 25 25 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 26 26 H 1.07997 * 119.95627 * 180.29989 * 14 12 11 27 27 H 1.08007 * 119.95999 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.3990 -2.6162 0.0001 12 6 6.1113 -2.0389 -1.0441 13 17 5.2667 -1.2694 -2.3510 14 6 7.4931 -2.0728 -1.0377 15 6 8.1664 -2.6905 0.0000 16 7 9.6461 -2.7300 0.0002 17 8 10.2408 -3.2734 0.9138 18 8 10.2691 -2.2192 -0.9134 19 6 7.4609 -3.2711 1.0380 20 6 6.0791 -3.2363 1.0413 21 17 5.1946 -3.9649 2.3452 22 1 -0.4850 0.8400 0.0004 23 1 3.8751 -0.6796 0.8895 24 1 3.8746 -0.6808 -0.8904 25 1 3.6260 -3.0952 0.7817 26 1 8.0473 -1.6200 -1.8465 27 1 7.9903 -3.7524 1.8471 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336677733.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:56 Heat of formation + Delta-G solvation = 0.390156 kcal Electronic energy + Delta-G solvation = -18134.550058 eV Core-core repulsion = 14754.073614 eV Total energy + Delta-G solvation = -3380.476443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 290.001 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.33959 -41.28672 -38.14142 -37.72155 -37.71682 -37.38798 -34.77927 -32.33089 -32.09655 -29.49941 -26.80816 -24.93099 -23.87381 -22.95521 -20.68158 -19.96686 -19.45510 -18.68899 -18.16722 -17.56135 -16.87707 -16.61739 -15.87659 -15.58820 -15.37969 -15.04190 -14.87281 -14.46578 -13.59093 -13.40213 -12.98842 -12.84126 -12.75862 -12.64774 -12.61212 -12.32663 -12.32184 -12.27712 -11.89333 -11.36681 -11.28293 -10.76803 -10.31259 -9.44695 -8.37075 -6.43078 -1.39926 -0.61034 -0.00732 0.03628 0.66699 0.89053 1.31608 1.32990 1.40994 1.71611 2.26453 2.61743 2.97428 3.21963 3.29002 3.45234 3.47929 3.97097 4.18735 4.34287 4.49723 4.58937 4.76141 5.16585 5.27450 5.51755 5.94089 6.24718 6.45194 6.62170 7.19703 8.78688 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.005659 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.135036 B = 4947.026239 C = 5792.709030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.024 3.976 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.246 1.246 7 C -0.532 4.532 8 H 0.047 0.953 9 C 0.158 3.842 10 N -0.613 5.613 11 C 0.194 3.806 12 C -0.075 4.075 13 Cl -0.019 7.019 14 C 0.000 4.000 15 C -0.073 4.073 16 N 0.042 4.958 17 O -0.165 6.165 18 O -0.171 6.171 19 C 0.005 3.995 20 C -0.098 4.098 21 Cl -0.018 7.018 22 H 0.270 0.730 23 H 0.008 0.992 24 H 0.067 0.933 25 H 0.370 0.630 26 H 0.186 0.814 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.119 -4.551 1.103 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.176 4.176 3 Si 0.750 3.250 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.169 1.169 7 C -0.570 4.570 8 H 0.065 0.935 9 C 0.035 3.965 10 N -0.234 5.234 11 C 0.086 3.914 12 C -0.106 4.106 13 Cl 0.011 6.989 14 C -0.020 4.020 15 C -0.159 4.159 16 N 0.559 4.441 17 O -0.380 6.380 18 O -0.385 6.385 19 C -0.016 4.016 20 C -0.130 4.130 21 Cl 0.011 6.989 22 H 0.079 0.921 23 H 0.026 0.974 24 H 0.084 0.916 25 H 0.196 0.804 26 H 0.203 0.797 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 14.868 -4.468 0.436 15.531 hybrid contribution -0.056 0.695 0.702 0.990 sum 14.813 -3.772 1.139 15.328 Atomic orbital electron populations 1.70000 1.08006 1.28420 1.51178 1.25634 0.95443 1.02621 0.93882 0.86005 0.79848 0.79349 0.79796 1.18583 1.20489 1.16936 1.21055 0.90097 0.93956 1.51867 0.93498 1.20454 0.95171 0.82608 0.98312 1.57245 1.01654 1.17189 1.47319 1.19150 0.90767 0.91016 0.90464 1.20062 0.91446 1.05895 0.93160 1.98412 1.76682 1.78765 1.45069 1.20833 0.91440 0.92631 0.97104 1.20415 0.79339 1.14121 1.02051 1.43382 1.03224 0.97933 0.99554 1.94537 1.70125 1.44421 1.28936 1.94551 1.67825 1.46976 1.29111 1.20833 0.91254 0.92630 0.96867 1.20547 0.92004 1.07982 0.92421 1.98416 1.74505 1.80771 1.45162 0.92069 0.97415 0.91557 0.80393 0.79697 0.79468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.03 13.96 21.45 0.30 -54.73 15 2 C 0.02 1.28 5.47 84.66 0.46 1.75 15 3 Si 0.93 40.37 27.47 68.60 1.88 42.25 15 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 15 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 15 6 H -0.25 -9.83 6.54 99.48 0.65 -9.18 15 7 C -0.53 -27.99 9.87 25.60 0.25 -27.74 15 8 H 0.05 2.75 8.06 -2.91 -0.02 2.72 15 9 C 0.16 6.67 4.06 85.56 0.35 7.02 15 10 N -0.61 -21.97 6.31 -342.03 -2.16 -24.12 15 11 C 0.19 5.69 5.77 38.21 0.22 5.91 15 12 C -0.07 -2.02 6.14 22.44 0.14 -1.88 15 13 Cl -0.02 -0.55 25.41 -2.72 -0.07 -0.62 15 14 C 0.00 0.01 9.33 22.27 0.21 0.21 15 15 C -0.07 -1.65 6.85 36.39 0.25 -1.40 15 16 N 0.04 1.03 4.45 -46.41 -0.21 0.83 15 17 O -0.17 -4.16 18.44 18.88 0.35 -3.81 15 18 O -0.17 -4.42 18.44 18.88 0.35 -4.07 15 19 C 0.00 0.09 9.33 22.28 0.21 0.30 15 20 C -0.10 -2.38 6.34 22.44 0.14 -2.24 15 21 Cl -0.02 -0.41 27.21 -2.72 -0.07 -0.48 15 22 H 0.27 14.83 8.31 -92.71 -0.77 14.06 15 23 H 0.01 0.34 7.20 -2.39 -0.02 0.32 15 24 H 0.07 2.72 4.15 -2.39 -0.01 2.72 15 25 H 0.37 12.82 6.70 -89.69 -0.60 12.22 15 26 H 0.19 3.40 7.60 -2.91 -0.02 3.38 15 27 H 0.19 3.03 7.60 -2.91 -0.02 3.01 15 Total: -1.00 -58.36 275.23 3.20 -55.16 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.60 Total: 7.66 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 2.23 Total: -18.07 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.07 Total: -78.03 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.70 Total: -7.88 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.88 Total: 42.25 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.14 Total: -1.10 kcal Total: -58.36 3.20 -55.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336677733.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.555 kcal (2) G-P(sol) polarization free energy of solvation -58.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds