Wall clock time and date at job start Tue Mar 31 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46712 * 2 1 4 4 C 1.52988 * 109.47639 * 120.00061 * 2 1 3 5 5 C 1.53005 * 109.47247 * 64.99847 * 4 2 1 6 6 H 1.08999 * 109.46900 * 305.00525 * 5 4 2 7 7 C 1.52997 * 109.46923 * 65.00120 * 5 4 2 8 8 C 1.52999 * 109.47165 * 185.00163 * 5 4 2 9 9 N 1.46901 * 109.46962 * 175.00342 * 8 5 4 10 10 C 1.46899 * 111.00143 * 185.04205 * 9 8 5 11 11 H 1.09008 * 109.46726 * 325.73018 * 10 9 8 12 12 C 1.53001 * 109.47396 * 205.73293 * 10 9 8 13 13 C 1.50707 * 109.47164 * 65.58569 * 12 10 9 14 14 H 1.07998 * 119.99406 * 355.64440 * 13 12 10 15 15 C 1.37865 * 120.00067 * 175.63833 * 13 12 10 16 16 N 1.31511 * 120.00313 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00213 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47093 * 90.00325 * 17 15 13 19 19 H 1.48494 * 109.47414 * 210.00345 * 17 15 13 20 20 H 1.48499 * 109.46965 * 330.00458 * 17 15 13 21 21 C 1.50701 * 109.47429 * 85.73159 * 10 9 8 22 22 C 1.38233 * 120.00138 * 220.00402 * 21 10 9 23 23 C 1.38228 * 119.99912 * 179.97438 * 22 21 10 24 24 C 1.38238 * 120.00324 * 359.95675 * 23 22 21 25 25 C 1.38232 * 119.99627 * 359.97438 * 24 23 22 26 26 C 1.38231 * 119.99648 * 39.97656 * 21 10 9 27 27 H 1.09003 * 109.46684 * 299.99468 * 1 2 3 28 28 H 1.08993 * 109.47492 * 59.99758 * 1 2 3 29 29 H 1.09001 * 109.46585 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46684 * 240.00532 * 2 1 3 31 31 H 1.09005 * 109.46817 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47135 * 299.99956 * 3 2 1 33 33 H 1.08993 * 109.47198 * 60.00639 * 3 2 1 34 34 H 1.08999 * 109.47337 * 304.99892 * 4 2 1 35 35 H 1.09004 * 109.47667 * 184.99926 * 4 2 1 36 36 H 1.09001 * 109.47359 * 59.99785 * 7 5 4 37 37 H 1.09000 * 109.47258 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47220 * 300.00047 * 7 5 4 39 39 H 1.08995 * 109.47598 * 55.00293 * 8 5 4 40 40 H 1.09006 * 109.46929 * 294.99625 * 8 5 4 41 41 H 1.00905 * 111.00171 * 61.08421 * 9 8 5 42 42 H 1.08998 * 109.47227 * 185.58729 * 12 10 9 43 43 H 1.08997 * 109.47066 * 305.59380 * 12 10 9 44 44 H 0.96998 * 120.00625 * 180.02562 * 16 15 13 45 45 H 1.08005 * 119.99777 * 359.97415 * 22 21 10 46 46 H 1.08008 * 120.00053 * 179.97438 * 23 22 21 47 47 H 1.07997 * 120.00359 * 179.72120 * 24 23 22 48 48 H 1.07997 * 120.00244 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00266 * 0.02562 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.6354 -2.1955 1.1879 6 1 0.5565 -2.2707 1.0526 7 6 2.3450 -2.8707 0.0126 8 6 2.0356 -2.8888 2.4917 9 7 1.5416 -4.2722 2.4823 10 6 1.8030 -4.9333 3.7678 11 1 2.7443 -4.5686 4.1791 12 6 1.8917 -6.4458 3.5547 13 6 3.0952 -6.7638 2.7051 14 1 3.6925 -5.9634 2.2940 15 6 3.4336 -8.0762 2.4528 16 7 2.7060 -9.0508 2.9530 17 14 4.9257 -8.4703 1.4003 18 1 6.1258 -8.5876 2.2670 19 1 4.7032 -9.7534 0.6867 20 1 5.1343 -7.3832 0.4105 21 6 0.6827 -4.6262 4.7277 22 6 0.9626 -4.3656 6.0561 23 6 -0.0650 -4.0833 6.9365 24 6 -1.3726 -4.0607 6.4884 25 6 -1.6523 -4.3199 5.1597 26 6 -0.6248 -4.6045 4.2797 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6056 -0.2617 2.1369 35 1 3.1265 -0.6443 1.2950 36 1 3.4239 -2.7954 0.1477 37 1 2.0570 -3.9211 -0.0308 38 1 2.0598 -2.3767 -0.9163 39 1 1.6012 -2.3536 3.3361 40 1 3.1218 -2.8915 2.5832 41 1 1.9439 -4.7947 1.7185 42 1 1.9864 -6.9438 4.5197 43 1 0.9899 -6.7955 3.0523 44 1 2.9442 -9.9742 2.7758 45 1 1.9842 -4.3826 6.4061 46 1 0.1536 -3.8801 7.9745 47 1 -2.1758 -3.8446 7.1771 48 1 -2.6738 -4.3027 4.8096 49 1 -0.8435 -4.8080 3.2419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337167201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:14 Heat of formation + Delta-G solvation = -16.631885 kcal Electronic energy + Delta-G solvation = -23398.437673 eV Core-core repulsion = 20323.538167 eV Total energy + Delta-G solvation = -3074.899506 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.98355 -37.92077 -35.87444 -33.52295 -32.31880 -30.41519 -30.03943 -28.55744 -27.23645 -26.65059 -25.16142 -23.75256 -22.09527 -21.82374 -20.41490 -19.58776 -19.17369 -16.58336 -16.05844 -15.65364 -15.38001 -14.84743 -14.62353 -14.47530 -14.01748 -13.82262 -13.67787 -13.23660 -12.96169 -12.80642 -12.55280 -12.37194 -12.27514 -12.11513 -12.02309 -11.78079 -11.35132 -11.27538 -11.14625 -11.07523 -10.83706 -10.80181 -10.60032 -10.50080 -10.36400 -10.26618 -10.14598 -10.05413 -9.53759 -9.16520 -8.44853 -8.38159 -8.03098 -7.69293 -6.05431 -4.09531 1.89957 1.95270 3.27698 3.34893 3.36678 4.32394 4.41572 4.63202 4.84218 4.91121 5.06426 5.23468 5.31878 5.36167 5.39139 5.41717 5.46209 5.54419 5.58083 5.63521 5.68227 5.73580 5.77350 5.88194 5.95201 5.97065 6.05678 6.08357 6.09470 6.14447 6.20944 6.23999 6.29901 6.36361 6.37804 6.48586 6.58338 6.61535 6.70741 6.76818 6.95129 7.01443 7.25587 7.48694 7.57126 7.60417 7.93000 8.02607 8.25034 8.32226 8.96020 9.54899 11.05126 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.005516 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.996705 B = 5075.048407 C = 7631.217376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.088 4.088 6 H 0.079 0.921 7 C -0.150 4.150 8 C 0.065 3.935 9 N -0.680 5.680 10 C 0.126 3.874 11 H 0.040 0.960 12 C 0.028 3.972 13 C -0.525 4.525 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.051 4.051 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.139 4.139 25 C -0.131 4.131 26 C -0.087 4.087 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.022 0.978 41 H 0.357 0.643 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.261 0.739 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.112 0.888 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 16.363 -1.240 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.107 4.107 6 H 0.098 0.902 7 C -0.208 4.208 8 C -0.064 4.064 9 N -0.315 5.315 10 C 0.017 3.983 11 H 0.058 0.942 12 C -0.009 4.009 13 C -0.563 4.563 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.052 4.052 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.106 4.106 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.179 0.821 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.130 0.870 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.349 16.325 -1.085 17.213 hybrid contribution 1.831 -0.509 -0.469 1.958 sum -3.517 15.816 -1.554 16.277 Atomic orbital electron populations 1.21888 0.95392 1.02142 1.01146 1.21154 0.95883 0.95666 0.98965 1.21848 1.00781 0.96430 1.01366 1.21654 1.00502 0.95132 0.97334 1.21172 1.01128 0.93426 0.94983 0.90242 1.21896 1.00056 1.01223 0.97589 1.21949 0.96676 0.91001 0.96814 1.60456 1.63287 1.01856 1.05852 1.20633 0.92053 0.98048 0.87586 0.94240 1.19256 0.97363 0.86695 0.97581 1.21120 1.11591 0.91811 1.31788 0.92912 1.24962 0.96582 0.96474 0.95900 1.69960 1.38738 0.99387 1.44660 0.86639 0.83187 0.77882 0.80569 1.20739 1.21176 1.19863 1.20215 0.95571 0.95559 0.93812 1.21044 0.98931 1.00786 0.93554 1.20964 0.93070 1.01622 0.98943 1.20960 0.96254 1.02612 0.95867 1.21118 0.98828 1.01152 0.93773 1.21039 0.91851 0.97738 0.99944 0.92934 0.93289 0.92024 0.91005 0.92927 0.93073 0.92904 0.92220 0.92325 0.93236 0.91834 0.93004 0.92113 0.96022 0.82101 0.95619 0.95661 0.92886 0.86773 0.87012 0.87164 0.86955 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.96 37.16 0.33 -1.11 16 2 C -0.10 -0.98 2.78 -90.62 -0.25 -1.23 16 3 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 4 C -0.11 -1.22 4.15 -26.73 -0.11 -1.33 16 5 C -0.09 -1.16 2.46 -90.62 -0.22 -1.38 16 6 H 0.08 1.08 6.34 -51.93 -0.33 0.75 16 7 C -0.15 -1.99 8.72 37.16 0.32 -1.67 16 8 C 0.07 1.03 4.91 -3.82 -0.02 1.01 16 9 N -0.68 -12.49 5.50 -107.95 -0.59 -13.08 16 10 C 0.13 2.59 2.19 -68.86 -0.15 2.44 16 11 H 0.04 0.84 7.71 -51.92 -0.40 0.44 16 12 C 0.03 0.71 4.54 -27.88 -0.13 0.58 16 13 C -0.52 -14.06 8.20 -34.44 -0.28 -14.35 16 14 H 0.05 1.37 7.40 -52.49 -0.39 0.98 16 15 C 0.06 1.75 5.46 -17.83 -0.10 1.65 16 16 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 17 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.05 -0.96 4.69 -104.63 -0.49 -1.45 16 22 C -0.12 -2.16 9.67 -39.59 -0.38 -2.54 16 23 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 16 24 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 25 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 26 C -0.09 -1.55 9.32 -39.58 -0.37 -1.92 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.64 6.46 -51.93 -0.34 0.30 16 30 H 0.07 0.73 6.34 -51.93 -0.33 0.40 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.94 6.80 -51.93 -0.35 0.59 16 38 H 0.05 0.60 6.46 -51.93 -0.34 0.27 16 39 H 0.06 0.97 7.95 -51.93 -0.41 0.55 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.36 7.08 5.61 -39.29 -0.22 6.86 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.11 1.87 8.04 -52.48 -0.42 1.45 16 46 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 47 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 49 H 0.13 2.30 7.72 -52.49 -0.41 1.90 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -28.09 383.89 -10.78 -38.87 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.99 Total: 7.15 kcal Atomic # 6 Polarization: -26.73 SS G_CDS: -2.70 Total: -29.43 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.14 Total: -38.46 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.09 -10.78 -38.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337167201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.240 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds