Wall clock time and date at job start Tue Mar 31 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46712 * 2 1 4 4 C 1.52988 * 109.47639 * 120.00061 * 2 1 3 5 5 C 1.53005 * 109.47247 * 64.99847 * 4 2 1 6 6 H 1.08999 * 109.46900 * 305.00525 * 5 4 2 7 7 C 1.52997 * 109.46923 * 65.00120 * 5 4 2 8 8 C 1.52999 * 109.47165 * 185.00163 * 5 4 2 9 9 N 1.46901 * 109.46962 * 175.00342 * 8 5 4 10 10 C 1.46899 * 111.00143 * 185.04205 * 9 8 5 11 11 H 1.09008 * 109.46726 * 325.73018 * 10 9 8 12 12 C 1.53001 * 109.47396 * 205.73293 * 10 9 8 13 13 C 1.50707 * 109.47164 * 65.58569 * 12 10 9 14 14 H 1.07998 * 119.99406 * 355.64440 * 13 12 10 15 15 C 1.37865 * 120.00067 * 175.63833 * 13 12 10 16 16 N 1.31511 * 120.00313 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00213 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47093 * 90.00325 * 17 15 13 19 19 H 1.48494 * 109.47414 * 210.00345 * 17 15 13 20 20 H 1.48499 * 109.46965 * 330.00458 * 17 15 13 21 21 C 1.50701 * 109.47429 * 85.73159 * 10 9 8 22 22 C 1.38233 * 120.00138 * 220.00402 * 21 10 9 23 23 C 1.38228 * 119.99912 * 179.97438 * 22 21 10 24 24 C 1.38238 * 120.00324 * 359.95675 * 23 22 21 25 25 C 1.38232 * 119.99627 * 359.97438 * 24 23 22 26 26 C 1.38231 * 119.99648 * 39.97656 * 21 10 9 27 27 H 1.09003 * 109.46684 * 299.99468 * 1 2 3 28 28 H 1.08993 * 109.47492 * 59.99758 * 1 2 3 29 29 H 1.09001 * 109.46585 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46684 * 240.00532 * 2 1 3 31 31 H 1.09005 * 109.46817 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47135 * 299.99956 * 3 2 1 33 33 H 1.08993 * 109.47198 * 60.00639 * 3 2 1 34 34 H 1.08999 * 109.47337 * 304.99892 * 4 2 1 35 35 H 1.09004 * 109.47667 * 184.99926 * 4 2 1 36 36 H 1.09001 * 109.47359 * 59.99785 * 7 5 4 37 37 H 1.09000 * 109.47258 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47220 * 300.00047 * 7 5 4 39 39 H 1.08995 * 109.47598 * 55.00293 * 8 5 4 40 40 H 1.09006 * 109.46929 * 294.99625 * 8 5 4 41 41 H 1.00905 * 111.00171 * 61.08421 * 9 8 5 42 42 H 1.08998 * 109.47227 * 185.58729 * 12 10 9 43 43 H 1.08997 * 109.47066 * 305.59380 * 12 10 9 44 44 H 0.96998 * 120.00625 * 180.02562 * 16 15 13 45 45 H 1.08005 * 119.99777 * 359.97415 * 22 21 10 46 46 H 1.08008 * 120.00053 * 179.97438 * 23 22 21 47 47 H 1.07997 * 120.00359 * 179.72120 * 24 23 22 48 48 H 1.07997 * 120.00244 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00266 * 0.02562 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.6354 -2.1955 1.1879 6 1 0.5565 -2.2707 1.0526 7 6 2.3450 -2.8707 0.0126 8 6 2.0356 -2.8888 2.4917 9 7 1.5416 -4.2722 2.4823 10 6 1.8030 -4.9333 3.7678 11 1 2.7443 -4.5686 4.1791 12 6 1.8917 -6.4458 3.5547 13 6 3.0952 -6.7638 2.7051 14 1 3.6925 -5.9634 2.2940 15 6 3.4336 -8.0762 2.4528 16 7 2.7060 -9.0508 2.9530 17 14 4.9257 -8.4703 1.4003 18 1 6.1258 -8.5876 2.2670 19 1 4.7032 -9.7534 0.6867 20 1 5.1343 -7.3832 0.4105 21 6 0.6827 -4.6262 4.7277 22 6 0.9626 -4.3656 6.0561 23 6 -0.0650 -4.0833 6.9365 24 6 -1.3726 -4.0607 6.4884 25 6 -1.6523 -4.3199 5.1597 26 6 -0.6248 -4.6045 4.2797 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6056 -0.2617 2.1369 35 1 3.1265 -0.6443 1.2950 36 1 3.4239 -2.7954 0.1477 37 1 2.0570 -3.9211 -0.0308 38 1 2.0598 -2.3767 -0.9163 39 1 1.6012 -2.3536 3.3361 40 1 3.1218 -2.8915 2.5832 41 1 1.9439 -4.7947 1.7185 42 1 1.9864 -6.9438 4.5197 43 1 0.9899 -6.7955 3.0523 44 1 2.9442 -9.9742 2.7758 45 1 1.9842 -4.3826 6.4061 46 1 0.1536 -3.8801 7.9745 47 1 -2.1758 -3.8446 7.1771 48 1 -2.6738 -4.3027 4.8096 49 1 -0.8435 -4.8080 3.2419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337167201.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:13 Heat of formation + Delta-G solvation = -29.137006 kcal Electronic energy + Delta-G solvation = -23398.979936 eV Core-core repulsion = 20323.538167 eV Total energy + Delta-G solvation = -3075.441768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.34599 -38.97927 -37.24497 -35.10788 -33.96272 -31.69159 -31.31225 -30.37779 -27.97481 -27.67087 -26.82346 -25.16889 -23.68056 -23.21600 -21.44537 -21.05897 -20.20138 -18.58605 -17.46650 -16.98589 -16.58699 -16.45636 -15.98986 -15.87644 -15.10086 -14.92997 -14.88664 -14.55359 -14.39703 -14.07138 -13.87804 -13.65580 -13.53428 -13.36772 -13.22168 -13.05143 -12.88184 -12.62959 -12.55350 -12.36616 -12.26853 -12.14761 -11.93325 -11.83846 -11.70711 -11.54813 -11.28894 -11.21913 -11.10998 -10.98950 -10.59606 -9.68347 -9.42007 -9.22279 -8.20501 -6.32224 0.59916 0.66071 1.38878 1.39198 1.50029 2.38688 3.02554 3.11058 3.39984 3.89262 3.97318 4.06242 4.12130 4.18774 4.20836 4.29765 4.37533 4.41906 4.51336 4.55580 4.68950 4.74905 4.78495 4.82926 4.83146 4.85383 4.87545 4.95573 4.99591 5.08556 5.10388 5.14750 5.20655 5.22621 5.30707 5.34420 5.37960 5.41679 5.45603 5.52689 5.61436 5.66784 5.68360 5.73258 5.80297 5.90257 6.16023 6.27331 6.41492 6.65649 6.81986 7.36811 8.90833 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.005516 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.996705 B = 5075.048407 C = 7631.217376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.102 4.102 5 C -0.079 4.079 6 H 0.076 0.924 7 C -0.147 4.147 8 C 0.070 3.930 9 N -0.677 5.677 10 C 0.141 3.859 11 H 0.027 0.973 12 C 0.042 3.958 13 C -0.534 4.534 14 H 0.058 0.942 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.262 1.262 21 C -0.077 4.077 22 C -0.141 4.141 23 C -0.125 4.125 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.104 4.104 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.014 0.986 41 H 0.346 0.654 42 H -0.009 1.009 43 H -0.003 1.003 44 H 0.263 0.737 45 H 0.114 0.886 46 H 0.143 0.857 47 H 0.148 0.852 48 H 0.139 0.861 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 18.349 -1.256 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.140 4.140 5 C -0.098 4.098 6 H 0.094 0.906 7 C -0.205 4.205 8 C -0.059 4.059 9 N -0.310 5.310 10 C 0.031 3.969 11 H 0.045 0.955 12 C 0.004 3.996 13 C -0.572 4.572 14 H 0.076 0.924 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.784 3.216 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.186 1.186 21 C -0.077 4.077 22 C -0.160 4.160 23 C -0.143 4.143 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.123 4.123 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.167 0.833 42 H 0.009 0.991 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.132 0.868 46 H 0.161 0.839 47 H 0.166 0.834 48 H 0.157 0.843 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.697 18.339 -1.098 19.235 hybrid contribution 1.865 -1.110 -0.393 2.206 sum -3.832 17.229 -1.491 17.712 Atomic orbital electron populations 1.21876 0.95184 1.01652 1.01761 1.21132 0.96027 0.96322 0.97952 1.21822 1.00904 0.95498 1.01973 1.21598 1.00547 0.93575 0.98286 1.21090 1.00841 0.94537 0.93320 0.90583 1.21866 0.99859 1.00185 0.98550 1.21987 0.96040 0.89484 0.98429 1.60501 1.63207 1.02851 1.04396 1.20293 0.92682 0.94886 0.89067 0.95536 1.19013 0.95635 0.89902 0.95029 1.21451 1.11917 0.92158 1.31625 0.92356 1.25858 0.99653 0.96353 0.97192 1.70099 1.40739 0.99805 1.46249 0.85531 0.79249 0.77862 0.78928 1.20150 1.20866 1.18565 1.20110 0.95380 0.97986 0.94260 1.21203 0.99930 1.01521 0.93344 1.21333 0.92789 1.00172 1.00016 1.21413 0.97012 1.00577 0.95935 1.21435 0.99410 0.99971 0.93999 1.21043 0.92227 0.98981 1.00029 0.92851 0.92176 0.93050 0.91082 0.92751 0.92094 0.92701 0.92148 0.92288 0.93453 0.93816 0.91106 0.92244 0.96790 0.83318 0.99100 0.98508 0.92788 0.86779 0.83942 0.83434 0.84286 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.96 71.98 0.64 -1.97 16 2 C -0.10 -1.73 2.78 -10.79 -0.03 -1.76 16 3 C -0.14 -2.23 9.19 71.98 0.66 -1.57 16 4 C -0.10 -2.17 4.15 30.59 0.13 -2.05 16 5 C -0.08 -2.06 2.46 -10.79 -0.03 -2.08 16 6 H 0.08 2.06 6.34 -2.39 -0.02 2.04 16 7 C -0.15 -3.86 8.72 71.98 0.63 -3.24 16 8 C 0.07 2.24 4.91 86.30 0.42 2.66 16 9 N -0.68 -25.97 5.50 -495.44 -2.73 -28.70 16 10 C 0.14 6.07 2.19 44.17 0.10 6.17 16 11 H 0.03 1.19 7.71 -2.38 -0.02 1.17 16 12 C 0.04 2.22 4.54 29.85 0.14 2.35 16 13 C -0.53 -29.63 8.20 25.60 0.21 -29.42 16 14 H 0.06 3.11 7.40 -2.91 -0.02 3.08 16 15 C 0.01 0.45 5.46 84.65 0.46 0.91 16 16 N -0.93 -56.40 13.29 21.44 0.28 -56.11 16 17 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 C -0.08 -2.97 4.69 -19.87 -0.09 -3.07 16 22 C -0.14 -4.91 9.67 22.27 0.22 -4.69 16 23 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 24 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 25 C -0.13 -3.81 10.05 22.27 0.22 -3.59 16 26 C -0.10 -3.77 9.32 22.27 0.21 -3.56 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.01 6.46 -2.39 -0.02 1.00 16 30 H 0.07 1.31 6.34 -2.39 -0.02 1.29 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.31 6.80 -2.39 -0.02 1.29 16 38 H 0.07 1.57 6.46 -2.39 -0.02 1.56 16 39 H 0.06 1.92 7.95 -2.39 -0.02 1.90 16 40 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.35 14.42 5.61 -89.69 -0.50 13.91 16 42 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 45 H 0.11 3.83 8.04 -2.91 -0.02 3.80 16 46 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 47 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 48 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 49 H 0.11 4.32 7.72 -2.91 -0.02 4.30 16 Total: -1.00 -62.59 383.89 4.30 -58.29 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.38 Total: 32.04 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 4.33 Total: -51.44 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -2.44 Total: -84.81 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.59 4.30 -58.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337167201.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.152 kcal (2) G-P(sol) polarization free energy of solvation -62.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds