Wall clock time and date at job start Tue Mar 31 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47237 * 2 1 4 4 C 1.53001 * 109.47203 * 120.00293 * 2 1 3 5 5 C 1.53000 * 109.47038 * 65.72880 * 4 2 1 6 6 H 1.09000 * 109.47325 * 305.93535 * 5 4 2 7 7 C 1.52998 * 109.46984 * 185.93439 * 5 4 2 8 8 C 1.53002 * 109.47238 * 65.93287 * 5 4 2 9 9 N 1.46900 * 109.47055 * 184.99537 * 8 5 4 10 10 C 1.46893 * 110.99870 * 181.77584 * 9 8 5 11 11 H 1.09000 * 109.47308 * 36.44094 * 10 9 8 12 12 C 1.52998 * 109.47118 * 156.43575 * 10 9 8 13 13 C 1.50700 * 109.47451 * 294.75154 * 12 10 9 14 14 H 1.08007 * 119.99733 * 4.26184 * 13 12 10 15 15 C 1.37870 * 120.00316 * 184.25916 * 13 12 10 16 16 N 1.31514 * 120.00214 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00244 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47362 * 89.99859 * 17 15 13 19 19 H 1.48502 * 109.47576 * 210.00272 * 17 15 13 20 20 H 1.48500 * 109.47273 * 330.00209 * 17 15 13 21 21 C 1.50699 * 109.47613 * 276.43800 * 10 9 8 22 22 C 1.38230 * 119.99813 * 319.72906 * 21 10 9 23 23 C 1.38239 * 120.00127 * 179.80881 * 22 21 10 24 24 C 1.38237 * 119.99573 * 0.39207 * 23 22 21 25 25 C 1.38227 * 120.00139 * 359.86245 * 24 23 22 26 26 C 1.38235 * 120.00017 * 139.99763 * 21 10 9 27 27 H 1.09001 * 109.47714 * 181.28861 * 1 2 3 28 28 H 1.08998 * 109.47373 * 301.28965 * 1 2 3 29 29 H 1.09003 * 109.47294 * 61.28986 * 1 2 3 30 30 H 1.09003 * 109.47061 * 240.00243 * 2 1 3 31 31 H 1.08997 * 109.47107 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47207 * 300.00406 * 3 2 1 33 33 H 1.09003 * 109.46897 * 60.00143 * 3 2 1 34 34 H 1.09001 * 109.46696 * 305.73159 * 4 2 1 35 35 H 1.08991 * 109.46797 * 185.73110 * 4 2 1 36 36 H 1.09007 * 109.46984 * 53.57572 * 7 5 4 37 37 H 1.08998 * 109.47133 * 173.57114 * 7 5 4 38 38 H 1.08994 * 109.47003 * 293.57596 * 7 5 4 39 39 H 1.09004 * 109.46773 * 64.99904 * 8 5 4 40 40 H 1.08993 * 109.47096 * 305.00335 * 8 5 4 41 41 H 1.00899 * 111.00056 * 305.73490 * 9 8 5 42 42 H 1.08999 * 109.47043 * 54.75457 * 12 10 9 43 43 H 1.09003 * 109.47559 * 174.75020 * 12 10 9 44 44 H 0.97003 * 120.00811 * 179.97438 * 16 15 13 45 45 H 1.07999 * 120.00464 * 359.97438 * 22 21 10 46 46 H 1.07997 * 120.00402 * 180.23384 * 23 22 21 47 47 H 1.08009 * 119.99618 * 179.83040 * 24 23 22 48 48 H 1.08008 * 120.00321 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.00552 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6510 -2.1994 1.1792 6 1 0.5760 -2.2850 1.0205 7 6 2.0294 -2.8890 2.4915 8 6 2.3924 -2.8676 0.0196 9 7 1.9301 -4.2546 -0.1228 10 6 2.6518 -4.9419 -1.2020 11 1 3.6889 -4.6065 -1.2166 12 6 2.6078 -6.4525 -0.9636 13 6 3.3697 -6.7852 0.2933 14 1 3.7797 -5.9928 0.9020 15 6 3.5432 -8.1011 0.6664 16 7 3.0443 -9.0661 -0.0749 17 14 4.4870 -8.5135 2.2248 18 1 3.5464 -8.5714 3.3725 19 1 5.1550 -9.8301 2.0653 20 1 5.5099 -7.4666 2.4757 21 6 2.0021 -4.6228 -2.5237 22 6 0.6243 -4.5684 -2.6213 23 6 0.0283 -4.2718 -3.8328 24 6 0.8100 -4.0375 -4.9486 25 6 2.1876 -4.0970 -4.8522 26 6 2.7838 -4.3898 -3.6398 27 1 -0.3634 -1.0274 0.0231 28 1 -0.3634 0.5337 0.8782 29 1 -0.3634 0.4937 -0.9013 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5953 -0.2702 2.1362 35 1 3.1251 -0.6333 1.3019 36 1 1.5923 -2.3434 3.3278 37 1 1.6509 -3.9112 2.4870 38 1 3.1143 -2.9037 2.5945 39 1 3.4636 -2.8605 0.2211 40 1 2.1926 -2.3214 -0.9022 41 1 2.0183 -4.7564 0.7481 42 1 1.5716 -6.7733 -0.8561 43 1 3.0614 -6.9675 -1.8105 44 1 3.1666 -9.9919 0.1873 45 1 0.0134 -4.7551 -1.7504 46 1 -1.0481 -4.2256 -3.9082 47 1 0.3443 -3.8085 -5.8958 48 1 2.7984 -3.9144 -5.7241 49 1 3.8601 -4.4362 -3.5645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337167202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:17 Heat of formation + Delta-G solvation = -29.039210 kcal Electronic energy + Delta-G solvation = -23698.625144 eV Core-core repulsion = 20623.187617 eV Total energy + Delta-G solvation = -3075.437528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36742 -39.01735 -37.14096 -35.06768 -34.02799 -31.70906 -31.37577 -30.41778 -27.99313 -27.57462 -26.82068 -25.05603 -23.67676 -23.21161 -21.64979 -21.03897 -20.18535 -18.58912 -17.47184 -16.99479 -16.65622 -16.44246 -15.93333 -15.66045 -15.41393 -14.97374 -14.67481 -14.49828 -14.14792 -14.06626 -14.05831 -13.70403 -13.54828 -13.37249 -13.19845 -12.99812 -12.95419 -12.69288 -12.50861 -12.44758 -12.29150 -12.11756 -12.08832 -11.81685 -11.74092 -11.48625 -11.24976 -11.12728 -11.11057 -11.02283 -10.59062 -9.68320 -9.42004 -9.22020 -8.20259 -6.31825 0.59818 0.66031 1.38939 1.39321 1.49729 2.38793 3.02745 3.11372 3.43921 3.83906 3.95514 4.06564 4.12195 4.16035 4.24116 4.29535 4.34650 4.41732 4.50434 4.56559 4.71023 4.75970 4.78903 4.81600 4.83494 4.86114 4.89478 4.94251 5.02360 5.04790 5.10601 5.16088 5.18947 5.23125 5.28784 5.30704 5.40209 5.41555 5.47780 5.53194 5.59765 5.64838 5.68318 5.73247 5.80398 5.90485 6.16310 6.27252 6.42328 6.67014 6.82232 7.37069 8.91101 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.005648 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.782013 B = 4956.265263 C = 7097.696398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.100 4.100 5 C -0.084 4.084 6 H 0.077 0.923 7 C -0.149 4.149 8 C 0.071 3.929 9 N -0.677 5.677 10 C 0.141 3.859 11 H 0.025 0.975 12 C 0.042 3.958 13 C -0.533 4.533 14 H 0.058 0.942 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.960 3.040 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.266 1.266 21 C -0.077 4.077 22 C -0.104 4.104 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.141 4.141 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.010 0.990 40 H 0.064 0.936 41 H 0.346 0.654 42 H -0.004 1.004 43 H -0.010 1.010 44 H 0.263 0.737 45 H 0.114 0.886 46 H 0.139 0.861 47 H 0.148 0.852 48 H 0.143 0.857 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 18.527 -2.312 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.200 4.200 4 C -0.138 4.138 5 C -0.102 4.102 6 H 0.095 0.905 7 C -0.206 4.206 8 C -0.058 4.058 9 N -0.310 5.310 10 C 0.031 3.969 11 H 0.042 0.958 12 C 0.005 3.995 13 C -0.571 4.571 14 H 0.076 0.924 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.784 3.216 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.078 4.078 22 C -0.122 4.122 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.160 4.160 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.083 0.917 41 H 0.167 0.833 42 H 0.015 0.985 43 H 0.009 0.991 44 H 0.072 0.928 45 H 0.132 0.868 46 H 0.157 0.843 47 H 0.166 0.834 48 H 0.160 0.840 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.804 18.507 -2.702 19.310 hybrid contribution 1.532 -1.144 1.104 2.208 sum -3.272 17.362 -1.598 17.740 Atomic orbital electron populations 1.21843 0.94972 1.01577 1.01789 1.21144 0.96273 0.96419 0.97962 1.21810 1.00788 0.95358 1.02075 1.21610 1.00616 0.93288 0.98282 1.21142 1.00613 0.94864 0.93612 0.90452 1.21850 1.00934 1.00378 0.97481 1.22056 0.95558 0.89346 0.98882 1.60518 1.58153 1.02732 1.09600 1.20289 0.92880 0.94734 0.88976 0.95753 1.18997 0.95411 0.89846 0.95247 1.21444 1.34728 0.92209 1.08683 0.92373 1.25858 0.96606 0.96422 1.00183 1.70102 1.46708 1.00032 1.40064 0.85531 0.78876 0.77576 0.79574 1.19600 1.21008 1.19002 1.20103 0.94694 0.98031 0.94928 1.21030 0.94181 0.98920 0.98058 1.21431 1.00794 0.99983 0.92565 1.21408 0.93675 1.00595 0.99204 1.21327 0.95693 1.00119 0.97142 1.21199 0.99714 1.01569 0.93513 0.93233 0.92046 0.92756 0.92548 0.92923 0.92488 0.92026 0.90703 0.92430 0.91062 0.93649 0.93582 0.97144 0.91729 0.83327 0.98521 0.99134 0.92799 0.86771 0.84302 0.83446 0.83967 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.00 71.98 0.65 -2.12 16 2 C -0.10 -2.00 2.81 -10.79 -0.03 -2.03 16 3 C -0.14 -2.38 9.19 71.98 0.66 -1.72 16 4 C -0.10 -2.10 4.13 30.59 0.13 -1.97 16 5 C -0.08 -2.17 2.48 -10.79 -0.03 -2.20 16 6 H 0.08 2.08 6.31 -2.39 -0.02 2.06 16 7 C -0.15 -3.92 8.81 71.98 0.63 -3.29 16 8 C 0.07 2.26 4.84 86.30 0.42 2.68 16 9 N -0.68 -26.02 5.57 -495.47 -2.76 -28.78 16 10 C 0.14 6.11 2.19 44.17 0.10 6.21 16 11 H 0.02 1.10 7.66 -2.39 -0.02 1.08 16 12 C 0.04 2.26 4.55 29.85 0.14 2.40 16 13 C -0.53 -29.63 8.20 25.60 0.21 -29.42 16 14 H 0.06 3.10 7.34 -2.91 -0.02 3.08 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -56.46 13.29 21.44 0.28 -56.17 16 17 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 C -0.08 -2.99 4.66 -19.87 -0.09 -3.08 16 22 C -0.10 -3.73 9.32 22.27 0.21 -3.52 16 23 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 24 C -0.13 -3.43 10.05 22.27 0.22 -3.20 16 25 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 26 C -0.14 -4.91 9.67 22.27 0.22 -4.70 16 27 H 0.05 1.08 6.41 -2.39 -0.02 1.06 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.33 6.26 -2.39 -0.01 1.32 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.04 1.35 6.94 -2.39 -0.02 1.34 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.01 0.35 8.02 -2.39 -0.02 0.33 16 40 H 0.06 2.08 6.11 -2.39 -0.01 2.06 16 41 H 0.35 14.38 5.48 -89.69 -0.49 13.89 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.11 4.32 7.73 -2.91 -0.02 4.29 16 46 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 47 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 48 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 49 H 0.11 3.82 8.04 -2.91 -0.02 3.80 16 Total: -1.00 -62.80 383.50 4.28 -58.52 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.39 Total: 32.40 kcal Atomic # 6 Polarization: -56.29 SS G_CDS: 4.34 Total: -51.95 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.47 Total: -84.95 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.80 4.28 -58.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337167202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.479 kcal (2) G-P(sol) polarization free energy of solvation -62.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds