Wall clock time and date at job start Tue Mar 31 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46914 * 2 1 4 4 H 1.08998 * 109.47071 * 54.78024 * 3 2 1 5 5 N 1.46903 * 109.46937 * 294.78118 * 3 2 1 6 6 C 1.46901 * 110.99630 * 154.39216 * 5 3 2 7 7 C 1.52994 * 109.46986 * 185.65091 * 6 5 3 8 8 C 1.53002 * 109.47435 * 300.00037 * 7 6 5 9 9 C 1.53003 * 109.47267 * 59.99583 * 7 6 5 10 10 C 1.52997 * 109.47399 * 179.97438 * 7 6 5 11 11 C 1.50702 * 109.47547 * 179.97438 * 10 7 6 12 12 H 1.08005 * 119.99910 * 0.02562 * 11 10 7 13 13 C 1.37871 * 119.99957 * 180.02562 * 11 10 7 14 14 N 1.31513 * 120.00500 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99726 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47427 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47172 * 120.00291 * 15 13 11 18 18 H 1.48507 * 109.46766 * 239.99803 * 15 13 11 19 19 C 1.50696 * 109.46672 * 174.78177 * 3 2 1 20 20 C 1.38263 * 120.00025 * 80.00416 * 19 3 2 21 21 C 1.38210 * 119.99887 * 179.97438 * 20 19 3 22 22 C 1.38260 * 120.00179 * 359.95589 * 21 20 19 23 23 C 1.38209 * 120.00004 * 359.97438 * 22 21 20 24 24 C 1.50693 * 119.99977 * 180.02562 * 23 22 21 25 25 C 1.38214 * 119.99923 * 259.72489 * 19 3 2 26 26 H 1.08995 * 109.47142 * 176.09080 * 1 2 3 27 27 H 1.08998 * 109.47026 * 296.08810 * 1 2 3 28 28 H 1.08993 * 109.47083 * 56.08813 * 1 2 3 29 29 H 1.09002 * 109.46588 * 240.00450 * 2 1 3 30 30 H 1.08995 * 109.47061 * 120.00052 * 2 1 3 31 31 H 1.00898 * 110.99804 * 278.34529 * 5 3 2 32 32 H 1.08999 * 109.47216 * 65.65229 * 6 5 3 33 33 H 1.09001 * 109.47056 * 305.64557 * 6 5 3 34 34 H 1.09004 * 109.47318 * 59.99355 * 8 7 6 35 35 H 1.08991 * 109.47909 * 180.02562 * 8 7 6 36 36 H 1.09008 * 109.46984 * 300.00620 * 8 7 6 37 37 H 1.08998 * 109.46688 * 60.00225 * 9 7 6 38 38 H 1.09003 * 109.47187 * 180.02562 * 9 7 6 39 39 H 1.08993 * 109.47482 * 300.00369 * 9 7 6 40 40 H 1.08998 * 109.47254 * 300.00201 * 10 7 6 41 41 H 1.09009 * 109.46747 * 60.00115 * 10 7 6 42 42 H 0.96999 * 120.00327 * 179.97438 * 14 13 11 43 43 H 1.08000 * 120.00012 * 359.97165 * 20 19 3 44 44 H 1.08001 * 119.99500 * 179.97438 * 21 20 19 45 45 H 1.07995 * 120.00038 * 180.02562 * 22 21 20 46 46 H 1.08997 * 109.47400 * 90.00046 * 24 23 22 47 47 H 1.09004 * 109.47289 * 210.00112 * 24 23 22 48 48 H 1.08997 * 109.47018 * 329.99712 * 24 23 22 49 49 H 1.07997 * 120.00035 * 359.97438 * 25 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6023 1.9827 0.8395 5 7 1.6559 2.0977 -1.2575 6 6 1.5624 3.5536 -1.0853 7 6 1.0259 4.1857 -2.3712 8 6 1.9741 3.8690 -3.5294 9 6 -0.3614 3.6182 -2.6782 10 6 0.9279 5.7020 -2.1917 11 6 0.4000 6.3247 -3.4585 12 1 0.1582 5.7013 -4.3067 13 6 0.2258 7.6903 -3.5347 14 7 0.5207 8.4495 -2.5021 15 14 -0.4291 8.4621 -5.1047 16 1 -0.6813 7.3995 -6.1109 17 1 -1.6965 9.1787 -4.8126 18 1 0.5704 9.4218 -5.6388 19 6 3.5414 1.4445 0.1292 20 6 4.3310 1.2019 -0.9795 21 6 5.7081 1.2041 -0.8611 22 6 6.2960 1.4499 0.3659 23 6 5.5067 1.6939 1.4739 24 6 6.1476 1.9623 2.8111 25 6 4.1292 1.6945 1.3549 26 1 -0.3633 -1.0252 -0.0701 27 1 -0.3633 0.4519 0.9230 28 1 -0.3633 0.5733 -0.8528 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.2982 1.8618 -1.9990 32 1 2.5507 3.9579 -0.8667 33 1 0.8867 3.7793 -0.2603 34 1 2.0436 2.7887 -3.6571 35 1 1.5922 4.3197 -4.4454 36 1 2.9626 4.2732 -3.3107 37 1 -1.0370 3.8439 -1.8531 38 1 -0.7435 4.0683 -3.5945 39 1 -0.2921 2.5380 -2.8059 40 1 0.2521 5.9273 -1.3667 41 1 1.9161 6.1066 -1.9728 42 1 0.3985 9.4103 -2.5559 43 1 3.8718 1.0105 -1.9381 44 1 6.3248 1.0142 -1.7271 45 1 7.3720 1.4521 0.4583 46 1 6.3185 3.0329 2.9238 47 1 5.4885 1.6139 3.6064 48 1 7.0992 1.4342 2.8705 49 1 3.5125 1.8888 2.2199 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348206923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:22 Heat of formation + Delta-G solvation = -9.602010 kcal Electronic energy + Delta-G solvation = -23597.334786 eV Core-core repulsion = 20522.740119 eV Total energy + Delta-G solvation = -3074.594667 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.87510 -37.66477 -35.75296 -32.63642 -32.59830 -31.35672 -30.73965 -27.14364 -26.91359 -26.27418 -25.99072 -24.47329 -22.39645 -22.15705 -21.84371 -19.75803 -17.80732 -16.87537 -16.19326 -15.69010 -15.39860 -14.74676 -14.49342 -14.44484 -14.10537 -13.82803 -13.57250 -13.35053 -13.11741 -12.79671 -12.59311 -12.46525 -12.25996 -11.99986 -11.95954 -11.76406 -11.73363 -11.17748 -11.08157 -10.92218 -10.91005 -10.74493 -10.69030 -10.66009 -10.45175 -10.22897 -10.05941 -9.63407 -8.99227 -8.83616 -8.76859 -8.61964 -8.29051 -8.05457 -5.93359 -3.93221 1.30508 1.35289 3.34100 3.41909 3.45506 3.70110 4.43559 4.54515 4.59648 4.75457 4.85518 5.05803 5.13773 5.21872 5.28461 5.42126 5.42636 5.44794 5.46836 5.62339 5.66056 5.69683 5.80342 5.84866 5.97053 6.00571 6.03205 6.05297 6.09508 6.24615 6.33197 6.37588 6.42749 6.50184 6.53310 6.55763 6.57556 6.72108 6.85720 6.87522 6.97465 7.25773 7.28518 7.31093 7.45851 7.70774 7.75472 7.90364 8.07425 8.52121 9.12557 9.69510 11.18384 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.003805 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.846990 B = 7357.815799 C = 8152.819861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C 0.122 3.878 4 H 0.083 0.917 5 N -0.673 5.673 6 C 0.071 3.929 7 C -0.056 4.056 8 C -0.127 4.127 9 C -0.115 4.115 10 C 0.033 3.967 11 C -0.505 4.505 12 H 0.059 0.941 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.886 3.114 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.099 4.099 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.086 4.086 24 C -0.114 4.114 25 C -0.115 4.115 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.338 0.662 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.258 0.742 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 -17.503 7.776 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C 0.012 3.988 4 H 0.101 0.899 5 N -0.304 5.304 6 C -0.058 4.058 7 C -0.056 4.056 8 C -0.185 4.185 9 C -0.172 4.172 10 C -0.004 4.004 11 C -0.543 4.543 12 H 0.078 0.922 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.101 4.101 20 C -0.140 4.140 21 C -0.130 4.130 22 C -0.146 4.146 23 C -0.086 4.086 24 C -0.170 4.170 25 C -0.133 4.133 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.727 -17.422 7.910 20.635 hybrid contribution 0.743 0.969 -0.746 1.430 sum 8.469 -16.454 7.164 19.844 Atomic orbital electron populations 1.21677 0.95069 1.00773 1.02688 1.21447 0.96608 0.94654 1.01253 1.20689 0.87812 0.96052 0.94281 0.89930 1.60796 1.54371 1.09904 1.05365 1.22122 0.98777 0.85543 0.99340 1.20597 0.94802 0.98167 0.92077 1.21750 0.98706 0.98136 0.99865 1.21589 0.95965 0.98657 1.01005 1.19124 0.96766 0.87482 0.97032 1.21284 1.42101 0.91619 0.99295 0.92249 1.25013 0.95964 0.97581 0.96055 1.69979 1.49355 1.04720 1.29737 0.86624 0.78571 0.79373 0.83965 1.19775 1.21172 1.21226 1.20806 0.97518 0.98259 0.93515 1.20925 0.93695 1.00983 0.98354 1.21087 0.94822 0.99706 0.97388 1.20983 0.99395 1.01568 0.92656 1.19909 0.93704 0.99322 0.95712 1.20785 1.00456 1.02110 0.93697 1.20928 0.94052 1.01095 0.97257 0.93726 0.93482 0.90773 0.92119 0.92486 0.84080 0.95865 0.91736 0.94894 0.91855 0.94227 0.94288 0.92830 0.93835 0.96766 0.97006 0.93271 0.86152 0.86185 0.86419 0.91140 0.91634 0.91732 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.85 37.16 0.37 -1.23 16 2 C -0.10 -1.11 5.59 -26.72 -0.15 -1.26 16 3 C 0.12 1.52 2.22 -68.86 -0.15 1.37 16 4 H 0.08 1.08 7.56 -51.93 -0.39 0.69 16 5 N -0.67 -9.57 4.76 -107.95 -0.51 -10.08 16 6 C 0.07 1.24 4.47 -3.83 -0.02 1.22 16 7 C -0.06 -1.12 0.60 -154.51 -0.09 -1.22 16 8 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 9 C -0.11 -2.22 8.06 37.16 0.30 -1.92 16 10 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 11 C -0.50 -13.93 7.65 -34.44 -0.26 -14.19 16 12 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 C -0.10 -1.24 4.81 -104.62 -0.50 -1.74 16 20 C -0.12 -1.47 9.11 -39.58 -0.36 -1.83 16 21 C -0.11 -1.27 10.05 -39.58 -0.40 -1.66 16 22 C -0.13 -1.40 9.70 -39.58 -0.38 -1.79 16 23 C -0.09 -0.97 5.88 -104.63 -0.62 -1.58 16 24 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 25 C -0.11 -1.37 9.33 -39.58 -0.37 -1.74 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.94 7.65 -51.93 -0.40 0.54 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.34 4.70 4.63 -39.29 -0.18 4.52 16 32 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 33 H 0.06 1.16 7.91 -51.93 -0.41 0.75 16 34 H 0.03 0.53 6.71 -51.93 -0.35 0.18 16 35 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 36 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 39 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.12 1.37 6.52 -52.49 -0.34 1.03 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 48 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 49 H 0.12 1.28 8.03 -52.49 -0.42 0.86 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -29.59 381.13 -10.17 -39.77 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.92 Total: 2.31 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -2.20 Total: -28.12 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.22 Total: -36.46 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.59 -10.17 -39.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348206923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.165 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds