Wall clock time and date at job start Tue Mar 31 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46914 * 2 1 4 4 H 1.08998 * 109.47071 * 54.78024 * 3 2 1 5 5 N 1.46903 * 109.46937 * 294.78118 * 3 2 1 6 6 C 1.46901 * 110.99630 * 154.39216 * 5 3 2 7 7 C 1.52994 * 109.46986 * 185.65091 * 6 5 3 8 8 C 1.53002 * 109.47435 * 300.00037 * 7 6 5 9 9 C 1.53003 * 109.47267 * 59.99583 * 7 6 5 10 10 C 1.52997 * 109.47399 * 179.97438 * 7 6 5 11 11 C 1.50702 * 109.47547 * 179.97438 * 10 7 6 12 12 H 1.08005 * 119.99910 * 0.02562 * 11 10 7 13 13 C 1.37871 * 119.99957 * 180.02562 * 11 10 7 14 14 N 1.31513 * 120.00500 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99726 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47427 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47172 * 120.00291 * 15 13 11 18 18 H 1.48507 * 109.46766 * 239.99803 * 15 13 11 19 19 C 1.50696 * 109.46672 * 174.78177 * 3 2 1 20 20 C 1.38263 * 120.00025 * 80.00416 * 19 3 2 21 21 C 1.38210 * 119.99887 * 179.97438 * 20 19 3 22 22 C 1.38260 * 120.00179 * 359.95589 * 21 20 19 23 23 C 1.38209 * 120.00004 * 359.97438 * 22 21 20 24 24 C 1.50693 * 119.99977 * 180.02562 * 23 22 21 25 25 C 1.38214 * 119.99923 * 259.72489 * 19 3 2 26 26 H 1.08995 * 109.47142 * 176.09080 * 1 2 3 27 27 H 1.08998 * 109.47026 * 296.08810 * 1 2 3 28 28 H 1.08993 * 109.47083 * 56.08813 * 1 2 3 29 29 H 1.09002 * 109.46588 * 240.00450 * 2 1 3 30 30 H 1.08995 * 109.47061 * 120.00052 * 2 1 3 31 31 H 1.00898 * 110.99804 * 278.34529 * 5 3 2 32 32 H 1.08999 * 109.47216 * 65.65229 * 6 5 3 33 33 H 1.09001 * 109.47056 * 305.64557 * 6 5 3 34 34 H 1.09004 * 109.47318 * 59.99355 * 8 7 6 35 35 H 1.08991 * 109.47909 * 180.02562 * 8 7 6 36 36 H 1.09008 * 109.46984 * 300.00620 * 8 7 6 37 37 H 1.08998 * 109.46688 * 60.00225 * 9 7 6 38 38 H 1.09003 * 109.47187 * 180.02562 * 9 7 6 39 39 H 1.08993 * 109.47482 * 300.00369 * 9 7 6 40 40 H 1.08998 * 109.47254 * 300.00201 * 10 7 6 41 41 H 1.09009 * 109.46747 * 60.00115 * 10 7 6 42 42 H 0.96999 * 120.00327 * 179.97438 * 14 13 11 43 43 H 1.08000 * 120.00012 * 359.97165 * 20 19 3 44 44 H 1.08001 * 119.99500 * 179.97438 * 21 20 19 45 45 H 1.07995 * 120.00038 * 180.02562 * 22 21 20 46 46 H 1.08997 * 109.47400 * 90.00046 * 24 23 22 47 47 H 1.09004 * 109.47289 * 210.00112 * 24 23 22 48 48 H 1.08997 * 109.47018 * 329.99712 * 24 23 22 49 49 H 1.07997 * 120.00035 * 359.97438 * 25 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6023 1.9827 0.8395 5 7 1.6559 2.0977 -1.2575 6 6 1.5624 3.5536 -1.0853 7 6 1.0259 4.1857 -2.3712 8 6 1.9741 3.8690 -3.5294 9 6 -0.3614 3.6182 -2.6782 10 6 0.9279 5.7020 -2.1917 11 6 0.4000 6.3247 -3.4585 12 1 0.1582 5.7013 -4.3067 13 6 0.2258 7.6903 -3.5347 14 7 0.5207 8.4495 -2.5021 15 14 -0.4291 8.4621 -5.1047 16 1 -0.6813 7.3995 -6.1109 17 1 -1.6965 9.1787 -4.8126 18 1 0.5704 9.4218 -5.6388 19 6 3.5414 1.4445 0.1292 20 6 4.3310 1.2019 -0.9795 21 6 5.7081 1.2041 -0.8611 22 6 6.2960 1.4499 0.3659 23 6 5.5067 1.6939 1.4739 24 6 6.1476 1.9623 2.8111 25 6 4.1292 1.6945 1.3549 26 1 -0.3633 -1.0252 -0.0701 27 1 -0.3633 0.4519 0.9230 28 1 -0.3633 0.5733 -0.8528 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.2982 1.8618 -1.9990 32 1 2.5507 3.9579 -0.8667 33 1 0.8867 3.7793 -0.2603 34 1 2.0436 2.7887 -3.6571 35 1 1.5922 4.3197 -4.4454 36 1 2.9626 4.2732 -3.3107 37 1 -1.0370 3.8439 -1.8531 38 1 -0.7435 4.0683 -3.5945 39 1 -0.2921 2.5380 -2.8059 40 1 0.2521 5.9273 -1.3667 41 1 1.9161 6.1066 -1.9728 42 1 0.3985 9.4103 -2.5559 43 1 3.8718 1.0105 -1.9381 44 1 6.3248 1.0142 -1.7271 45 1 7.3720 1.4521 0.4583 46 1 6.3185 3.0329 2.9238 47 1 5.4885 1.6139 3.6064 48 1 7.0992 1.4342 2.8705 49 1 3.5125 1.8888 2.2199 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348206923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:21 Heat of formation + Delta-G solvation = -23.214761 kcal Electronic energy + Delta-G solvation = -23597.925080 eV Core-core repulsion = 20522.740119 eV Total energy + Delta-G solvation = -3075.184961 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81723 -39.04560 -37.03517 -34.58755 -33.44084 -32.59623 -31.74500 -28.98106 -27.96270 -27.78506 -27.17172 -25.95609 -24.09277 -23.12650 -22.74180 -20.72576 -19.46751 -18.33604 -17.79505 -16.79409 -16.50290 -16.31970 -15.73973 -15.53959 -15.42585 -14.86468 -14.70046 -14.59590 -14.41947 -13.97549 -13.87702 -13.83500 -13.61128 -13.23833 -13.07943 -12.84295 -12.82207 -12.67162 -12.59372 -12.50699 -12.24393 -12.18647 -12.06063 -11.87901 -11.79549 -11.72762 -11.56140 -11.34844 -10.85517 -10.70595 -10.51099 -9.69853 -9.52400 -9.26895 -8.13768 -6.20856 0.42821 0.47594 1.39978 1.40867 1.53248 2.43789 2.82618 3.20198 3.28731 3.68861 3.93029 4.04102 4.12952 4.22737 4.24099 4.29982 4.36016 4.41237 4.50895 4.56037 4.59711 4.74886 4.78722 4.80094 4.82890 4.88616 4.95769 4.97867 5.09186 5.10625 5.14627 5.20095 5.23200 5.23714 5.28725 5.36807 5.52346 5.54344 5.54883 5.59009 5.60122 5.64544 5.68680 5.69883 5.89049 5.93569 6.12797 6.14821 6.37748 6.53950 6.94592 7.46621 8.98913 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017123 B = 0.003805 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.846990 B = 7357.815799 C = 8152.819861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C 0.125 3.875 4 H 0.074 0.926 5 N -0.664 5.664 6 C 0.088 3.912 7 C -0.052 4.052 8 C -0.119 4.119 9 C -0.104 4.104 10 C 0.040 3.960 11 C -0.512 4.512 12 H 0.067 0.933 13 C -0.005 4.005 14 N -0.939 5.939 15 Si 0.956 3.044 16 H -0.260 1.260 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.111 4.111 20 C -0.136 4.136 21 C -0.119 4.119 22 C -0.136 4.136 23 C -0.095 4.095 24 C -0.113 4.113 25 C -0.132 4.132 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.343 0.657 32 H 0.007 0.993 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.031 0.969 37 H 0.029 0.971 38 H 0.037 0.963 39 H 0.070 0.930 40 H -0.017 1.017 41 H -0.021 1.021 42 H 0.259 0.741 43 H 0.126 0.874 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.925 -19.328 7.023 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C 0.015 3.985 4 H 0.092 0.908 5 N -0.296 5.296 6 C -0.042 4.042 7 C -0.053 4.053 8 C -0.177 4.177 9 C -0.162 4.162 10 C 0.003 3.997 11 C -0.550 4.550 12 H 0.085 0.915 13 C -0.201 4.201 14 N -0.580 5.580 15 Si 0.782 3.218 16 H -0.184 1.184 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.113 4.113 20 C -0.154 4.154 21 C -0.137 4.137 22 C -0.154 4.154 23 C -0.095 4.095 24 C -0.169 4.169 25 C -0.150 4.150 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.165 0.835 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.001 0.999 41 H -0.002 1.002 42 H 0.068 0.932 43 H 0.144 0.856 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.229 -19.273 7.153 22.144 hybrid contribution 0.635 1.514 -0.442 1.701 sum 8.864 -17.759 6.710 20.952 Atomic orbital electron populations 1.21646 0.95039 1.01388 1.01870 1.21390 0.96470 0.93386 1.01939 1.20684 0.88240 0.96703 0.92850 0.90820 1.60743 1.54802 1.07416 1.06592 1.21764 0.97400 0.87582 0.97412 1.20462 0.96171 0.94554 0.94089 1.21654 0.97624 1.00216 0.98171 1.21482 0.94869 1.00072 0.99751 1.19003 0.93878 0.91490 0.95339 1.21650 1.41369 0.91999 0.99987 0.91518 1.25925 0.96378 0.98374 0.99451 1.70122 1.50803 1.05037 1.32081 0.85525 0.77813 0.78555 0.79950 1.18372 1.20811 1.20850 1.20818 0.97293 0.99117 0.94067 1.21084 0.94294 1.01559 0.98476 1.21387 0.94794 0.99213 0.98330 1.21318 1.00593 1.00982 0.92479 1.20259 0.93562 0.98651 0.97044 1.20824 1.01189 1.02360 0.92534 1.21135 0.94843 1.01602 0.97450 0.92278 0.93615 0.92378 0.91735 0.91432 0.83548 0.97435 0.92721 0.91450 0.93472 0.94941 0.95152 0.94393 0.91141 0.99890 1.00219 0.93208 0.85590 0.84349 0.84377 0.91081 0.90872 0.90200 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.85 71.98 0.71 -2.19 16 2 C -0.09 -1.89 5.59 30.60 0.17 -1.72 16 3 C 0.13 3.02 2.22 44.17 0.10 3.11 16 4 H 0.07 1.91 7.56 -2.39 -0.02 1.89 16 5 N -0.66 -18.17 4.76 -495.45 -2.36 -20.53 16 6 C 0.09 3.10 4.47 86.30 0.39 3.49 16 7 C -0.05 -2.11 0.60 -52.18 -0.03 -2.15 16 8 C -0.12 -4.41 7.89 71.98 0.57 -3.84 16 9 C -0.10 -3.98 8.06 71.98 0.58 -3.40 16 10 C 0.04 2.15 4.04 29.85 0.12 2.27 16 11 C -0.51 -28.73 7.65 25.60 0.20 -28.53 16 12 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16 13 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 14 N -0.94 -58.21 13.29 21.44 0.28 -57.93 16 15 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 C -0.11 -2.68 4.81 -19.87 -0.10 -2.78 16 20 C -0.14 -3.13 9.11 22.27 0.20 -2.92 16 21 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 22 C -0.14 -2.74 9.70 22.27 0.22 -2.53 16 23 C -0.10 -2.00 5.88 -19.87 -0.12 -2.12 16 24 C -0.11 -1.74 10.01 71.23 0.71 -1.02 16 25 C -0.13 -3.07 9.33 22.27 0.21 -2.86 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 1.38 7.65 -2.39 -0.02 1.36 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.34 8.91 4.63 -89.70 -0.41 8.50 16 32 H 0.01 0.28 8.11 -2.39 -0.02 0.26 16 33 H 0.05 2.03 7.91 -2.39 -0.02 2.01 16 34 H 0.07 2.01 6.71 -2.38 -0.02 1.99 16 35 H 0.05 1.88 6.62 -2.39 -0.02 1.87 16 36 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 38 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 39 H 0.07 2.30 7.60 -2.39 -0.02 2.28 16 40 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.13 2.65 6.52 -2.91 -0.02 2.63 16 44 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 45 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 1.00 8.09 -2.38 -0.02 0.98 16 48 H 0.08 0.97 8.09 -2.39 -0.02 0.96 16 49 H 0.12 2.63 8.03 -2.91 -0.02 2.61 16 Total: -1.00 -64.60 381.13 5.04 -59.56 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.48 Total: 21.24 kcal Atomic # 6 Polarization: -53.90 SS G_CDS: 4.61 Total: -49.29 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.07 Total: -78.46 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.60 5.04 -59.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348206923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.343 kcal (2) G-P(sol) polarization free energy of solvation -64.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds