Wall clock time and date at job start Tue Mar 31 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47466 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.46914 * 30.00417 * 3 2 1 6 6 H 1.48507 * 109.46739 * 150.00133 * 3 2 1 7 7 C 1.37880 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00025 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99753 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46827 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.81408 * 102.99810 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46846 * 180.02562 * 12 11 10 14 14 C 1.38217 * 119.98796 * 269.72004 * 13 12 11 15 15 C 1.38353 * 120.01302 * 179.76612 * 14 13 12 16 16 Cl 1.73604 * 120.00920 * 180.27926 * 15 14 13 17 17 C 1.38327 * 119.98737 * 0.54085 * 15 14 13 18 18 C 1.38334 * 119.97451 * 359.71742 * 17 15 14 19 19 Cl 1.73595 * 120.00688 * 179.97438 * 18 17 15 20 20 C 1.38215 * 119.98370 * 90.00214 * 13 12 11 21 21 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46758 * 60.00594 * 9 7 2 23 23 H 1.08997 * 109.47547 * 299.99923 * 9 7 2 24 24 H 1.09005 * 109.46565 * 60.00353 * 10 9 7 25 25 H 1.08997 * 109.47094 * 300.00322 * 10 9 7 26 26 H 1.09000 * 109.46602 * 60.00357 * 12 11 10 27 27 H 1.09000 * 109.47286 * 300.00088 * 12 11 10 28 28 H 1.08009 * 119.99089 * 0.02562 * 14 13 12 29 29 H 1.08000 * 120.01594 * 179.69947 * 17 15 14 30 30 H 1.08003 * 120.00001 * 359.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 16 5.8355 -2.6364 -0.0009 12 6 6.2436 -4.4040 -0.0016 13 6 7.7411 -4.5738 -0.0010 14 6 8.4274 -4.6568 -1.1978 15 6 9.8027 -4.8078 -1.1978 16 17 10.6655 -4.9049 -2.7012 17 6 10.4896 -4.8869 0.0002 18 6 9.8016 -4.8091 1.1978 19 17 10.6627 -4.9089 2.7018 20 6 8.4269 -4.6522 1.1965 21 1 -0.4851 0.8400 -0.0004 22 1 3.8751 -0.6804 0.8889 23 1 3.8746 -0.6800 -0.8911 24 1 3.6579 -3.1504 -0.8908 25 1 3.6586 -3.1501 0.8892 26 1 5.8247 -4.8732 -0.8918 27 1 5.8247 -4.8740 0.8882 28 1 7.8905 -4.5996 -2.1332 29 1 11.5626 -5.0096 0.0007 30 1 7.8896 -4.5914 2.1315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357383788.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:32 Heat of formation + Delta-G solvation = -9.123696 kcal Electronic energy + Delta-G solvation = -15066.734614 eV Core-core repulsion = 12232.138833 eV Total energy + Delta-G solvation = -2834.595780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85560 -37.06382 -36.69802 -33.76138 -33.07403 -31.28288 -30.97850 -27.62949 -25.54625 -23.14785 -22.19263 -20.73221 -17.55892 -17.01342 -16.37370 -16.07342 -15.72895 -14.74593 -14.51408 -14.30155 -14.11977 -13.84551 -13.05871 -13.01531 -12.77903 -12.65382 -12.28186 -12.00416 -11.79234 -11.33859 -11.29720 -11.26447 -11.19263 -10.35538 -10.13118 -10.08137 -9.63273 -9.24295 -9.05962 -9.02150 -8.63001 -7.38131 -6.13890 -4.14333 0.56835 0.66424 1.48183 1.94854 2.01427 2.95857 3.21993 3.27811 3.35370 3.40334 4.17066 4.38497 4.59536 4.63940 4.70049 4.83789 5.09524 5.20141 5.25130 5.44656 5.66873 5.72357 5.80742 5.92599 6.00001 6.17548 6.47169 7.06031 7.18230 7.62006 8.38972 8.87401 9.46676 10.98762 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.003155 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.093179 B = 8871.827451 C = 9530.628942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.053 4.053 11 S -0.276 6.276 12 C -0.054 4.054 13 C -0.035 4.035 14 C -0.090 4.090 15 C -0.022 4.022 16 Cl -0.058 7.058 17 C -0.105 4.105 18 C -0.023 4.023 19 Cl -0.058 7.058 20 C -0.089 4.089 21 H 0.265 0.735 22 H 0.026 0.974 23 H 0.022 0.978 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.202 -12.620 0.021 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.201 4.201 11 S -0.046 6.046 12 C -0.202 4.202 13 C -0.037 4.037 14 C -0.110 4.110 15 C -0.049 4.049 16 Cl -0.029 7.029 17 C -0.125 4.125 18 C -0.050 4.050 19 Cl -0.029 7.029 20 C -0.110 4.110 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.040 0.960 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 22.851 -11.652 0.025 25.650 hybrid contribution -0.349 -0.128 -0.023 0.373 sum 22.502 -11.780 0.001 25.399 Atomic orbital electron populations 1.69894 1.06281 1.27173 1.50366 1.24961 0.94739 0.99183 0.94185 0.86791 0.80478 0.83441 0.78789 1.20047 1.21155 1.18783 1.20947 0.88406 0.94771 1.52054 0.90800 1.19367 0.97152 0.89486 0.97613 1.23532 0.87697 1.04684 1.04162 1.87153 1.12826 1.06541 1.98102 1.22253 0.93366 0.98269 1.06281 1.19166 0.94422 0.98052 0.92083 1.21076 0.91990 0.98738 0.99197 1.20653 0.92391 1.04667 0.87234 1.98390 1.76694 1.96600 1.31243 1.20873 1.00926 1.01445 0.89281 1.20657 0.92410 1.04657 0.87230 1.98390 1.76775 1.96582 1.31174 1.21078 0.92005 0.98714 0.99196 0.92484 0.95541 0.95981 0.90606 0.90584 0.88722 0.88726 0.83875 0.83892 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.07 4.05 -27.88 -0.11 -0.05 16 10 C -0.05 -1.01 5.88 37.16 0.22 -0.79 16 11 S -0.28 -4.51 21.72 -107.50 -2.33 -6.84 16 12 C -0.05 -0.63 6.07 36.01 0.22 -0.42 16 13 C -0.04 -0.38 5.14 -104.64 -0.54 -0.92 16 14 C -0.09 -0.92 9.48 -39.55 -0.38 -1.30 16 15 C -0.02 -0.22 6.32 -39.51 -0.25 -0.47 16 16 Cl -0.06 -0.54 28.96 -51.86 -1.50 -2.04 16 17 C -0.11 -0.98 9.61 -39.51 -0.38 -1.36 16 18 C -0.02 -0.22 6.32 -39.50 -0.25 -0.47 16 19 Cl -0.06 -0.53 28.96 -51.86 -1.50 -2.04 16 20 C -0.09 -0.92 9.48 -39.54 -0.38 -1.30 16 21 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 23 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 24 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.09 1.00 8.08 -51.92 -0.42 0.58 16 27 H 0.09 1.00 8.08 -51.92 -0.42 0.58 16 28 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 307.00 15.07 4.63 4.63 Total: -1.00 -29.33 307.00 -10.19 -39.51 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -3.31 Total: -3.68 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.27 Total: -19.96 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.41 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -2.33 Total: -6.84 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -3.00 Total: -4.07 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.33 -10.19 -39.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357383788.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.391 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds