Wall clock time and date at job start Tue Mar 31 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47466 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.46914 * 30.00417 * 3 2 1 6 6 H 1.48507 * 109.46739 * 150.00133 * 3 2 1 7 7 C 1.37880 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00025 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99753 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46827 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.81408 * 102.99810 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46846 * 180.02562 * 12 11 10 14 14 C 1.38217 * 119.98796 * 269.72004 * 13 12 11 15 15 C 1.38353 * 120.01302 * 179.76612 * 14 13 12 16 16 Cl 1.73604 * 120.00920 * 180.27926 * 15 14 13 17 17 C 1.38327 * 119.98737 * 0.54085 * 15 14 13 18 18 C 1.38334 * 119.97451 * 359.71742 * 17 15 14 19 19 Cl 1.73595 * 120.00688 * 179.97438 * 18 17 15 20 20 C 1.38215 * 119.98370 * 90.00214 * 13 12 11 21 21 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.46758 * 60.00594 * 9 7 2 23 23 H 1.08997 * 109.47547 * 299.99923 * 9 7 2 24 24 H 1.09005 * 109.46565 * 60.00353 * 10 9 7 25 25 H 1.08997 * 109.47094 * 300.00322 * 10 9 7 26 26 H 1.09000 * 109.46602 * 60.00357 * 12 11 10 27 27 H 1.09000 * 109.47286 * 300.00088 * 12 11 10 28 28 H 1.08009 * 119.99089 * 0.02562 * 14 13 12 29 29 H 1.08000 * 120.01594 * 179.69947 * 17 15 14 30 30 H 1.08003 * 120.00001 * 359.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 16 5.8355 -2.6364 -0.0009 12 6 6.2436 -4.4040 -0.0016 13 6 7.7411 -4.5738 -0.0010 14 6 8.4274 -4.6568 -1.1978 15 6 9.8027 -4.8078 -1.1978 16 17 10.6655 -4.9049 -2.7012 17 6 10.4896 -4.8869 0.0002 18 6 9.8016 -4.8091 1.1978 19 17 10.6627 -4.9089 2.7018 20 6 8.4269 -4.6522 1.1965 21 1 -0.4851 0.8400 -0.0004 22 1 3.8751 -0.6804 0.8889 23 1 3.8746 -0.6800 -0.8911 24 1 3.6579 -3.1504 -0.8908 25 1 3.6586 -3.1501 0.8892 26 1 5.8247 -4.8732 -0.8918 27 1 5.8247 -4.8740 0.8882 28 1 7.8905 -4.5996 -2.1332 29 1 11.5626 -5.0096 0.0007 30 1 7.8896 -4.5914 2.1315 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357383788.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:31 Heat of formation + Delta-G solvation = -22.885417 kcal Electronic energy + Delta-G solvation = -15067.331367 eV Core-core repulsion = 12232.138833 eV Total energy + Delta-G solvation = -2835.192533 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62490 -37.79312 -37.43680 -35.74948 -33.89050 -33.27464 -31.74058 -28.55571 -27.41751 -23.91357 -23.24776 -22.38068 -19.13828 -18.33803 -17.16649 -17.02317 -16.74753 -16.41774 -15.74407 -15.44005 -15.39908 -14.82586 -14.62695 -14.29081 -14.00772 -13.65075 -13.37923 -13.07496 -13.06361 -12.76200 -12.29582 -12.15875 -12.08425 -11.98206 -11.85459 -11.72276 -11.49750 -10.88158 -10.80472 -9.87190 -9.81730 -8.65731 -8.33308 -6.38605 -0.27548 -0.10290 0.73171 0.90598 1.20751 1.35514 1.37187 1.49077 1.67175 2.33542 2.42119 3.02148 3.34139 3.85599 3.87496 3.90593 4.06558 4.23997 4.27365 4.32446 4.45100 4.58846 4.80962 4.91184 4.97962 5.19957 5.20308 5.31847 5.40169 5.54196 6.19371 6.67627 7.26209 8.82682 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.003155 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.093179 B = 8871.827451 C = 9530.628942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.531 4.531 8 H 0.041 0.959 9 C 0.007 3.993 10 C -0.050 4.050 11 S -0.294 6.294 12 C -0.039 4.039 13 C -0.047 4.047 14 C -0.091 4.091 15 C -0.029 4.029 16 Cl -0.053 7.053 17 C -0.100 4.100 18 C -0.029 4.029 19 Cl -0.053 7.053 20 C -0.091 4.091 21 H 0.269 0.731 22 H 0.023 0.977 23 H 0.022 0.978 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.150 0.850 29 H 0.159 0.841 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.503 -12.774 -0.005 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.059 0.941 9 C -0.032 4.032 10 C -0.198 4.198 11 S -0.064 6.064 12 C -0.186 4.186 13 C -0.049 4.049 14 C -0.112 4.112 15 C -0.056 4.056 16 Cl -0.024 7.024 17 C -0.120 4.120 18 C -0.056 4.056 19 Cl -0.024 7.024 20 C -0.112 4.112 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.168 0.832 29 H 0.177 0.823 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 25.155 -11.812 -0.002 27.791 hybrid contribution -0.979 -0.228 -0.016 1.005 sum 24.176 -12.041 -0.017 27.009 Atomic orbital electron populations 1.70032 1.08105 1.28342 1.52045 1.25890 0.95553 1.03215 0.93913 0.85738 0.79452 0.78683 0.79340 1.19054 1.20607 1.17506 1.21292 0.90974 0.93583 1.51161 0.94053 1.19208 0.94264 0.92528 0.97182 1.23199 0.90449 1.01726 1.04387 1.87096 1.09553 1.11512 1.98210 1.22298 0.94185 0.94349 1.07801 1.19082 0.93836 0.99454 0.92522 1.21211 0.92338 0.98257 0.99372 1.20714 0.92385 1.04807 0.87667 1.98395 1.76513 1.96574 1.30914 1.21085 1.01774 1.00178 0.88926 1.20717 0.92400 1.04799 0.87663 1.98394 1.76595 1.96556 1.30848 1.21212 0.92357 0.98251 0.99369 0.92249 0.95889 0.96004 0.90424 0.90451 0.87281 0.87304 0.83197 0.82333 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.36 13.96 21.45 0.30 -58.06 16 2 C 0.01 0.71 5.47 84.66 0.46 1.17 16 3 Si 0.94 44.15 27.47 68.60 1.88 46.03 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 7 C -0.53 -29.98 9.66 25.60 0.25 -29.74 16 8 H 0.04 2.53 7.99 -2.91 -0.02 2.50 16 9 C 0.01 0.32 4.05 29.85 0.12 0.44 16 10 C -0.05 -1.85 5.88 71.98 0.42 -1.43 16 11 S -0.29 -9.09 21.72 -56.49 -1.23 -10.32 16 12 C -0.04 -0.83 6.07 71.24 0.43 -0.39 16 13 C -0.05 -0.92 5.14 -19.87 -0.10 -1.02 16 14 C -0.09 -1.69 9.48 22.29 0.21 -1.48 16 15 C -0.03 -0.50 6.32 22.32 0.14 -0.36 16 16 Cl -0.05 -0.87 28.96 -2.72 -0.08 -0.95 16 17 C -0.10 -1.63 9.61 22.31 0.21 -1.42 16 18 C -0.03 -0.51 6.32 22.32 0.14 -0.36 16 19 Cl -0.05 -0.87 28.96 -2.72 -0.08 -0.95 16 20 C -0.09 -1.69 9.48 22.29 0.21 -1.48 16 21 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 22 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 23 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 24 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 25 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.11 2.01 8.08 -2.39 -0.02 1.99 16 27 H 0.11 2.01 8.08 -2.39 -0.02 1.99 16 28 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -62.74 307.00 4.39 -58.35 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 1.09 Total: 1.97 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 2.50 Total: -36.07 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.30 Total: -58.06 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.03 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.23 Total: -10.32 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.16 Total: -1.90 kcal Total: -62.74 4.39 -58.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357383788.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.462 kcal (2) G-P(sol) polarization free energy of solvation -62.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds