Wall clock time and date at job start Tue Mar 31 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47482 * 2 1 4 4 C 1.53003 * 109.47190 * 120.00227 * 2 1 3 5 5 C 1.52998 * 109.47187 * 64.99556 * 4 2 1 6 6 C 1.53003 * 109.47110 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.47031 * 304.99896 * 6 5 4 8 8 C 1.53001 * 109.47194 * 185.00211 * 6 5 4 9 9 N 1.46893 * 109.47309 * 65.00080 * 6 5 4 10 10 C 1.46903 * 111.00078 * 205.00318 * 9 6 5 11 11 H 1.08995 * 109.47227 * 34.99689 * 10 9 6 12 12 C 1.52996 * 109.47290 * 154.99979 * 10 9 6 13 13 C 1.50703 * 109.47158 * 295.00089 * 12 10 9 14 14 H 1.07997 * 119.99985 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00146 * 180.02562 * 13 12 10 16 16 N 1.31514 * 119.99888 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00010 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47381 * 89.99651 * 17 15 13 19 19 H 1.48502 * 109.47318 * 209.99324 * 17 15 13 20 20 H 1.48494 * 109.47186 * 329.99460 * 17 15 13 21 21 C 1.50706 * 109.46711 * 274.99761 * 10 9 6 22 22 C 1.38233 * 120.00109 * 319.72464 * 21 10 9 23 23 C 1.38237 * 119.99743 * 179.80918 * 22 21 10 24 24 C 1.38233 * 120.00125 * 0.40204 * 23 22 21 25 25 C 1.38238 * 120.00012 * 359.85160 * 24 23 22 26 26 C 1.38235 * 120.00123 * 359.95693 * 25 24 23 27 27 H 1.09001 * 109.47292 * 300.00388 * 1 2 3 28 28 H 1.09007 * 109.47130 * 60.00418 * 1 2 3 29 29 H 1.09002 * 109.47532 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47292 * 239.99612 * 2 1 3 31 31 H 1.08996 * 109.47182 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46830 * 299.99503 * 3 2 1 33 33 H 1.09000 * 109.46679 * 59.99722 * 3 2 1 34 34 H 1.09001 * 109.46820 * 305.00077 * 4 2 1 35 35 H 1.09000 * 109.47557 * 185.00054 * 4 2 1 36 36 H 1.09002 * 109.47317 * 60.00684 * 5 4 2 37 37 H 1.09000 * 109.47278 * 300.00668 * 5 4 2 38 38 H 1.09000 * 109.47119 * 300.00275 * 8 6 5 39 39 H 1.09001 * 109.47179 * 59.99788 * 8 6 5 40 40 H 1.08997 * 109.47266 * 179.97438 * 8 6 5 41 41 H 1.00903 * 111.00066 * 328.95248 * 9 6 5 42 42 H 1.09004 * 109.47171 * 54.99761 * 12 10 9 43 43 H 1.08997 * 109.47482 * 174.99693 * 12 10 9 44 44 H 0.97001 * 120.00171 * 180.02562 * 16 15 13 45 45 H 1.08004 * 119.99934 * 0.02562 * 22 21 10 46 46 H 1.07999 * 119.99896 * 180.23009 * 23 22 21 47 47 H 1.08002 * 120.00311 * 179.83689 * 24 23 22 48 48 H 1.08000 * 120.00524 * 179.97438 * 25 24 23 49 49 H 1.07999 * 120.00181 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1880 6 6 2.1446 -2.9166 2.4375 7 1 3.2199 -2.7648 2.5316 8 6 1.8495 -4.4132 2.3186 9 7 1.4681 -2.3769 3.6244 10 6 2.2857 -2.5696 4.8296 11 1 3.3403 -2.4686 4.5733 12 6 1.9114 -1.5158 5.8737 13 6 2.2762 -0.1471 5.3592 14 1 2.7300 -0.0397 4.3851 15 6 2.0316 0.9678 6.1325 16 7 1.4794 0.8370 7.3189 17 14 2.4843 2.6642 5.4950 18 1 1.3348 3.2357 4.7485 19 1 2.8209 3.5494 6.6389 20 1 3.6573 2.5564 4.5908 21 6 2.0350 -3.9452 5.3920 22 6 0.7527 -4.4611 5.4105 23 6 0.5233 -5.7245 5.9227 24 6 1.5750 -6.4685 6.4240 25 6 2.8566 -5.9504 6.4102 26 6 3.0866 -4.6887 5.8944 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6053 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2952 36 1 2.0698 -2.6551 0.3003 37 1 0.5488 -2.2724 1.1420 38 1 0.7742 -4.5651 2.2245 39 1 2.3514 -4.8137 1.4379 40 1 2.2128 -4.9270 3.2086 41 1 1.2360 -1.4032 3.4969 42 1 0.8391 -1.5583 6.0646 43 1 2.4532 -1.7125 6.7989 44 1 1.3069 1.6214 7.8628 45 1 -0.0695 -3.8786 5.0216 46 1 -0.4779 -6.1291 5.9338 47 1 1.3955 -7.4544 6.8266 48 1 3.6782 -6.5314 6.8022 49 1 4.0877 -4.2838 5.8841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358337973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:31 Heat of formation + Delta-G solvation = -14.405838 kcal Electronic energy + Delta-G solvation = -23977.936725 eV Core-core repulsion = 20903.133748 eV Total energy + Delta-G solvation = -3074.802977 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.12019 -37.60744 -35.76508 -33.55524 -32.10837 -30.37142 -29.56486 -28.91693 -27.57632 -27.03423 -24.54534 -23.43376 -22.11676 -21.78525 -19.92670 -19.71911 -19.47911 -16.63940 -16.07084 -15.47873 -15.20310 -14.81845 -14.61838 -14.43955 -13.96388 -13.88781 -13.57568 -13.06124 -12.80613 -12.63879 -12.46084 -12.21886 -12.11142 -12.00119 -11.91223 -11.76508 -11.37862 -11.17111 -11.07707 -11.01892 -10.87731 -10.60706 -10.53394 -10.46601 -10.38642 -10.31709 -10.11751 -9.93858 -9.52411 -9.14497 -8.44301 -8.37296 -7.97966 -7.69038 -6.05281 -4.09067 1.90860 1.96167 3.26950 3.34466 3.36201 4.33285 4.41649 4.84438 4.89602 5.04914 5.07628 5.31217 5.36752 5.40989 5.42365 5.49967 5.51040 5.62125 5.72637 5.74802 5.81918 5.88878 5.91726 5.98620 6.04581 6.08788 6.09801 6.13575 6.17374 6.28475 6.30860 6.35142 6.38927 6.43630 6.50807 6.59012 6.61281 6.67845 6.72317 6.78948 6.96083 7.02686 7.27466 7.50979 7.58062 7.61577 7.93564 8.05927 8.28471 8.34028 8.96684 9.55190 11.05280 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.006363 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.819083 B = 4399.478293 C = 6563.999259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.123 4.123 5 C -0.118 4.118 6 C 0.084 3.916 7 H 0.035 0.965 8 C -0.138 4.138 9 N -0.675 5.675 10 C 0.127 3.873 11 H 0.039 0.961 12 C 0.028 3.972 13 C -0.524 4.524 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.046 4.046 22 C -0.086 4.086 23 C -0.131 4.131 24 C -0.139 4.139 25 C -0.127 4.127 26 C -0.127 4.127 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.057 0.943 41 H 0.358 0.642 42 H 0.027 0.973 43 H 0.022 0.978 44 H 0.261 0.739 45 H 0.127 0.873 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 -8.378 -10.718 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.161 4.161 5 C -0.156 4.156 6 C -0.027 4.027 7 H 0.053 0.947 8 C -0.196 4.196 9 N -0.312 5.312 10 C 0.017 3.983 11 H 0.057 0.943 12 C -0.009 4.009 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.714 3.286 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.046 4.046 22 C -0.105 4.105 23 C -0.149 4.149 24 C -0.158 4.158 25 C -0.146 4.146 26 C -0.145 4.145 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.182 0.818 42 H 0.046 0.954 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.145 0.855 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.129 0.871 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.470 -8.805 -10.462 13.682 hybrid contribution 1.013 1.634 -0.271 1.941 sum 0.542 -7.171 -10.733 12.920 Atomic orbital electron populations 1.21892 0.95364 1.01811 1.01527 1.21069 0.95888 0.95916 0.98232 1.21861 1.00822 0.96372 1.01631 1.21761 1.00759 0.95338 0.98236 1.21795 1.01746 0.94892 0.97161 1.21531 0.95934 0.94672 0.90521 0.94670 1.21857 1.01500 0.95671 1.00584 1.60514 1.44300 1.25373 1.00969 1.20698 0.94431 0.91481 0.91690 0.94295 1.19254 0.97789 0.91023 0.92830 1.21124 1.40934 0.91365 1.02759 0.92814 1.24958 0.95084 0.98996 0.94837 1.69962 1.42784 1.29772 1.10157 0.86686 0.78859 0.84534 0.78529 1.20529 1.21252 1.19901 1.20189 0.92956 0.95713 0.95778 1.21028 0.97295 0.94571 0.97565 1.21111 0.98356 0.95409 0.99999 1.20947 0.93252 0.99645 1.01921 1.20955 0.96653 0.96018 1.00935 1.21036 0.98889 0.94522 1.00095 0.92296 0.93431 0.92428 0.91893 0.92937 0.93183 0.92365 0.90638 0.92358 0.92346 0.91097 0.92582 0.93985 0.92381 0.81763 0.95421 0.96005 0.92920 0.85477 0.87009 0.87222 0.87075 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.95 37.15 0.33 -1.42 16 2 C -0.09 -1.14 2.92 -90.62 -0.26 -1.40 16 3 C -0.15 -1.84 9.19 37.16 0.34 -1.50 16 4 C -0.12 -1.75 4.51 -26.73 -0.12 -1.87 16 5 C -0.12 -1.59 4.56 -26.73 -0.12 -1.71 16 6 C 0.08 1.30 2.65 -67.71 -0.18 1.12 16 7 H 0.04 0.59 7.43 -51.93 -0.39 0.20 16 8 C -0.14 -1.99 8.87 37.16 0.33 -1.67 16 9 N -0.68 -12.26 5.43 -100.95 -0.55 -12.81 16 10 C 0.13 2.56 2.19 -68.86 -0.15 2.41 16 11 H 0.04 0.82 7.29 -51.93 -0.38 0.44 16 12 C 0.03 0.70 4.55 -27.88 -0.13 0.58 16 13 C -0.52 -13.84 8.12 -34.44 -0.28 -14.12 16 14 H 0.05 1.37 7.49 -52.49 -0.39 0.98 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 17 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 21 C -0.05 -0.84 2.92 -104.62 -0.31 -1.15 16 22 C -0.09 -1.51 8.64 -39.58 -0.34 -1.85 16 23 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 24 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 16 25 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.13 -2.17 9.66 -39.58 -0.38 -2.55 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.25 6.42 -51.93 -0.33 0.92 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.96 6.57 -51.93 -0.34 0.62 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.92 5.94 -51.93 -0.31 0.61 16 41 H 0.36 7.04 4.95 -39.29 -0.19 6.85 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 45 H 0.13 2.29 7.73 -52.48 -0.41 1.89 16 46 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 47 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 48 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 49 H 0.11 1.85 8.04 -52.49 -0.42 1.42 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -27.70 381.50 -10.62 -38.32 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -8.98 Total: 8.64 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: -2.56 Total: -30.63 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.19 Total: -38.03 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.70 -10.62 -38.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358337973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.918 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds