Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 C 1.52998 * 109.47174 * 120.00808 * 2 1 3 5 5 C 1.52993 * 109.47405 * 64.99644 * 4 2 1 6 6 C 1.52998 * 109.47405 * 179.97438 * 5 4 2 7 7 H 1.09007 * 109.46949 * 54.99844 * 6 5 4 8 8 C 1.52996 * 109.47741 * 174.99908 * 6 5 4 9 9 N 1.46893 * 109.47187 * 295.00282 * 6 5 4 10 10 C 1.46903 * 111.00409 * 154.99646 * 9 6 5 11 11 H 1.09006 * 109.46760 * 35.00053 * 10 9 6 12 12 C 1.52992 * 109.47282 * 154.99837 * 10 9 6 13 13 C 1.50700 * 109.47257 * 295.00076 * 12 10 9 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 10 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47021 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47081 * 119.99727 * 17 15 13 20 20 H 1.48501 * 109.47213 * 240.00099 * 17 15 13 21 21 C 1.50699 * 109.47100 * 275.00113 * 10 9 6 22 22 C 1.38235 * 119.99871 * 319.72355 * 21 10 9 23 23 C 1.38236 * 119.99561 * 179.78870 * 22 21 10 24 24 C 1.38238 * 120.00362 * 0.44045 * 23 22 21 25 25 C 1.38231 * 119.99957 * 359.81377 * 24 23 22 26 26 C 1.38237 * 119.99957 * 139.99649 * 21 10 9 27 27 H 1.09000 * 109.47423 * 59.99560 * 1 2 3 28 28 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46825 * 300.00013 * 1 2 3 30 30 H 1.09007 * 109.46765 * 240.00409 * 2 1 3 31 31 H 1.09000 * 109.47065 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47837 * 300.00469 * 3 2 1 33 33 H 1.09007 * 109.46951 * 60.00524 * 3 2 1 34 34 H 1.08997 * 109.46747 * 304.99354 * 4 2 1 35 35 H 1.09001 * 109.46972 * 184.99705 * 4 2 1 36 36 H 1.08997 * 109.47405 * 60.00113 * 5 4 2 37 37 H 1.09001 * 109.47105 * 299.99979 * 5 4 2 38 38 H 1.08995 * 109.47783 * 180.02562 * 8 6 5 39 39 H 1.09000 * 109.47065 * 300.00310 * 8 6 5 40 40 H 1.09001 * 109.46928 * 59.99501 * 8 6 5 41 41 H 1.00900 * 111.00065 * 31.04245 * 9 6 5 42 42 H 1.09004 * 109.47330 * 175.00099 * 12 10 9 43 43 H 1.08997 * 109.47279 * 55.00586 * 12 10 9 44 44 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 45 45 H 1.07994 * 120.00023 * 359.97438 * 22 21 10 46 46 H 1.08003 * 120.00112 * 180.27263 * 23 22 21 47 47 H 1.08003 * 119.99861 * 179.83132 * 24 23 22 48 48 H 1.07993 * 120.00141 * 179.97438 * 25 24 23 49 49 H 1.07997 * 119.99879 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6352 -2.1955 1.1878 6 6 2.1458 -2.9171 2.4366 7 1 1.7829 -2.4034 3.3269 8 6 1.6358 -4.3596 2.4366 9 7 3.6147 -2.9171 2.4359 10 6 4.1419 -3.0369 3.8019 11 1 3.4864 -3.6801 4.3891 12 6 5.5451 -3.6448 3.7556 13 6 5.4640 -5.0565 3.2343 14 1 4.5072 -5.4780 2.9636 15 6 6.6112 -5.8103 3.1040 16 7 7.7768 -5.2954 3.4295 17 14 6.5107 -7.5598 2.4573 18 1 5.0954 -7.8969 2.1593 19 1 7.3194 -7.6763 1.2172 20 1 7.0372 -8.4972 3.4816 21 6 4.2066 -1.6717 4.4369 22 6 4.6221 -0.5828 3.6937 23 6 4.6773 0.6702 4.2750 24 6 4.3256 0.8327 5.6020 25 6 3.9151 -0.2572 6.3466 26 6 3.8558 -1.5095 5.7641 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6055 -0.2619 2.1368 35 1 3.1263 -0.6445 1.2950 36 1 2.0698 -2.6550 0.3000 37 1 0.5489 -2.2724 1.1419 38 1 1.9992 -4.8735 3.3265 39 1 0.5458 -4.3596 2.4371 40 1 1.9987 -4.8732 1.5463 41 1 3.9761 -2.0928 1.9799 42 1 5.9713 -3.6519 4.7588 43 1 6.1773 -3.0499 3.0965 44 1 8.5837 -5.8258 3.3382 45 1 4.9008 -0.7104 2.6581 46 1 4.9977 1.5218 3.6931 47 1 4.3713 1.8112 6.0568 48 1 3.6407 -0.1304 7.3834 49 1 3.5349 -2.3610 6.3458 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358337974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = -9.435392 kcal Electronic energy + Delta-G solvation = -23955.278349 eV Core-core repulsion = 20880.690906 eV Total energy + Delta-G solvation = -3074.587442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.36984 -37.66808 -35.90937 -33.49324 -32.09899 -30.62124 -29.53527 -28.67028 -27.96157 -27.22603 -24.44950 -23.54739 -22.31891 -21.83381 -19.97578 -19.90085 -19.52809 -16.98199 -16.03998 -15.61802 -15.12635 -14.87962 -14.65753 -14.43406 -14.19731 -14.03810 -13.43134 -13.14092 -13.04791 -12.66795 -12.56966 -12.48168 -12.24706 -12.06409 -12.01810 -11.71238 -11.47660 -11.25152 -11.08979 -10.96119 -10.86129 -10.78640 -10.64686 -10.55825 -10.41176 -10.27454 -10.18939 -9.90297 -9.54439 -8.95591 -8.59479 -8.23762 -8.17876 -7.59915 -5.85239 -3.82877 1.72530 1.73684 3.39947 3.47397 3.52280 4.14267 4.59010 4.71922 4.81649 4.86009 4.89788 5.18147 5.21421 5.29160 5.36611 5.38525 5.44039 5.48886 5.52259 5.54676 5.66376 5.74638 5.79365 5.84288 5.86642 5.88620 5.93682 6.02264 6.06518 6.09910 6.19972 6.23194 6.24751 6.33482 6.39038 6.43203 6.46704 6.57531 6.75827 6.79138 6.79419 6.93391 7.03445 7.35526 7.60586 7.72716 8.04942 8.10280 8.21278 8.60674 9.22631 9.78149 11.26778 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.005406 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.011512 B = 5178.456410 C = 6642.812208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.116 4.116 5 C -0.121 4.121 6 C 0.084 3.916 7 H 0.033 0.967 8 C -0.137 4.137 9 N -0.655 5.655 10 C 0.128 3.872 11 H 0.074 0.926 12 C 0.042 3.958 13 C -0.485 4.485 14 H 0.061 0.939 15 C 0.050 3.950 16 N -0.903 5.903 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.288 1.288 21 C -0.088 4.088 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.138 4.138 25 C -0.121 4.121 26 C -0.118 4.118 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.332 0.668 42 H 0.017 0.983 43 H 0.018 0.982 44 H 0.256 0.744 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.101 12.894 -1.908 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.154 4.154 5 C -0.159 4.159 6 C -0.026 4.026 7 H 0.051 0.949 8 C -0.195 4.195 9 N -0.288 5.288 10 C 0.019 3.981 11 H 0.092 0.908 12 C 0.004 3.996 13 C -0.524 4.524 14 H 0.080 0.920 15 C -0.149 4.149 16 N -0.544 5.544 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.215 1.215 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.156 4.156 25 C -0.139 4.139 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.154 0.846 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.066 0.934 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.881 12.163 -2.066 17.836 hybrid contribution 0.036 -0.022 0.091 0.100 sum -12.845 12.140 -1.975 17.784 Atomic orbital electron populations 1.21883 0.95613 1.01766 1.01213 1.21107 0.95620 0.96000 0.98738 1.21840 1.01102 0.96193 1.01303 1.21709 1.00968 0.95408 0.97316 1.21822 1.00591 0.94567 0.98920 1.21489 0.89439 0.95712 0.96001 0.94880 1.21772 0.98266 0.96367 1.03081 1.60744 1.04867 1.45433 1.17747 1.21007 1.00809 0.89145 0.87168 0.90815 1.19086 0.87864 0.95683 0.96921 1.21164 0.93201 0.97145 1.40880 0.92035 1.24998 0.95625 0.98057 0.96234 1.69987 0.97844 1.36632 1.49937 0.86586 0.77924 0.85341 0.78399 1.19813 1.21355 1.21492 1.21208 0.95603 0.97670 0.94512 1.20932 1.00108 0.92441 1.00041 1.21032 1.00356 0.97056 0.95230 1.20987 1.01599 0.98372 0.94627 1.21067 1.00432 0.93100 0.99333 1.21084 1.00622 0.97001 0.94942 0.93203 0.92403 0.92968 0.91245 0.92632 0.93088 0.92903 0.92333 0.91828 0.91163 0.91776 0.92419 0.93894 0.92012 0.84643 0.96486 0.96403 0.93433 0.86407 0.86742 0.86897 0.86759 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.95 37.16 0.33 -1.03 16 2 C -0.10 -0.98 2.92 -90.62 -0.26 -1.24 16 3 C -0.15 -1.39 9.19 37.16 0.34 -1.04 16 4 C -0.12 -1.37 4.51 -26.74 -0.12 -1.49 16 5 C -0.12 -1.54 4.56 -26.74 -0.12 -1.67 16 6 C 0.08 1.28 2.46 -67.72 -0.17 1.12 16 7 H 0.03 0.52 7.64 -51.93 -0.40 0.13 16 8 C -0.14 -2.14 9.40 37.16 0.35 -1.79 16 9 N -0.66 -11.95 5.76 -100.96 -0.58 -12.53 16 10 C 0.13 2.57 1.98 -68.87 -0.14 2.44 16 11 H 0.07 1.52 6.98 -51.93 -0.36 1.15 16 12 C 0.04 1.06 4.63 -27.89 -0.13 0.93 16 13 C -0.49 -13.50 8.84 -34.44 -0.30 -13.81 16 14 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 15 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 16 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 17 Si 0.89 22.12 29.54 -169.99 -5.02 17.09 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 C -0.09 -1.56 4.61 -104.62 -0.48 -2.04 16 22 C -0.12 -1.90 8.90 -39.58 -0.35 -2.25 16 23 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 24 C -0.14 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.12 -1.73 10.05 -39.58 -0.40 -2.12 16 26 C -0.12 -1.92 9.67 -39.58 -0.38 -2.31 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.81 5.74 -51.93 -0.30 0.51 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 38 H 0.06 0.99 7.43 -51.93 -0.39 0.60 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.33 5.73 4.16 -39.29 -0.16 5.57 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.12 1.88 6.07 -52.49 -0.32 1.56 16 46 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 47 H 0.11 1.24 8.06 -52.48 -0.42 0.81 16 48 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 49 H 0.12 1.83 8.04 -52.49 -0.42 1.40 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -29.92 383.22 -10.73 -40.65 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.91 Total: 4.99 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: -2.73 Total: -29.30 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.16 Total: -39.21 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.92 -10.73 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358337974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.212 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds