Wall clock time and date at job start Tue Mar 31 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 C 1.52998 * 109.47174 * 120.00808 * 2 1 3 5 5 C 1.52993 * 109.47405 * 64.99644 * 4 2 1 6 6 C 1.52998 * 109.47405 * 179.97438 * 5 4 2 7 7 H 1.09007 * 109.46949 * 54.99844 * 6 5 4 8 8 C 1.52996 * 109.47741 * 174.99908 * 6 5 4 9 9 N 1.46893 * 109.47187 * 295.00282 * 6 5 4 10 10 C 1.46903 * 111.00409 * 154.99646 * 9 6 5 11 11 H 1.09006 * 109.46760 * 35.00053 * 10 9 6 12 12 C 1.52992 * 109.47282 * 154.99837 * 10 9 6 13 13 C 1.50700 * 109.47257 * 295.00076 * 12 10 9 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 10 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47021 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47081 * 119.99727 * 17 15 13 20 20 H 1.48501 * 109.47213 * 240.00099 * 17 15 13 21 21 C 1.50699 * 109.47100 * 275.00113 * 10 9 6 22 22 C 1.38235 * 119.99871 * 319.72355 * 21 10 9 23 23 C 1.38236 * 119.99561 * 179.78870 * 22 21 10 24 24 C 1.38238 * 120.00362 * 0.44045 * 23 22 21 25 25 C 1.38231 * 119.99957 * 359.81377 * 24 23 22 26 26 C 1.38237 * 119.99957 * 139.99649 * 21 10 9 27 27 H 1.09000 * 109.47423 * 59.99560 * 1 2 3 28 28 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46825 * 300.00013 * 1 2 3 30 30 H 1.09007 * 109.46765 * 240.00409 * 2 1 3 31 31 H 1.09000 * 109.47065 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47837 * 300.00469 * 3 2 1 33 33 H 1.09007 * 109.46951 * 60.00524 * 3 2 1 34 34 H 1.08997 * 109.46747 * 304.99354 * 4 2 1 35 35 H 1.09001 * 109.46972 * 184.99705 * 4 2 1 36 36 H 1.08997 * 109.47405 * 60.00113 * 5 4 2 37 37 H 1.09001 * 109.47105 * 299.99979 * 5 4 2 38 38 H 1.08995 * 109.47783 * 180.02562 * 8 6 5 39 39 H 1.09000 * 109.47065 * 300.00310 * 8 6 5 40 40 H 1.09001 * 109.46928 * 59.99501 * 8 6 5 41 41 H 1.00900 * 111.00065 * 31.04245 * 9 6 5 42 42 H 1.09004 * 109.47330 * 175.00099 * 12 10 9 43 43 H 1.08997 * 109.47279 * 55.00586 * 12 10 9 44 44 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 45 45 H 1.07994 * 120.00023 * 359.97438 * 22 21 10 46 46 H 1.08003 * 120.00112 * 180.27263 * 23 22 21 47 47 H 1.08003 * 119.99861 * 179.83132 * 24 23 22 48 48 H 1.07993 * 120.00141 * 179.97438 * 25 24 23 49 49 H 1.07997 * 119.99879 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6352 -2.1955 1.1878 6 6 2.1458 -2.9171 2.4366 7 1 1.7829 -2.4034 3.3269 8 6 1.6358 -4.3596 2.4366 9 7 3.6147 -2.9171 2.4359 10 6 4.1419 -3.0369 3.8019 11 1 3.4864 -3.6801 4.3891 12 6 5.5451 -3.6448 3.7556 13 6 5.4640 -5.0565 3.2343 14 1 4.5072 -5.4780 2.9636 15 6 6.6112 -5.8103 3.1040 16 7 7.7768 -5.2954 3.4295 17 14 6.5107 -7.5598 2.4573 18 1 5.0954 -7.8969 2.1593 19 1 7.3194 -7.6763 1.2172 20 1 7.0372 -8.4972 3.4816 21 6 4.2066 -1.6717 4.4369 22 6 4.6221 -0.5828 3.6937 23 6 4.6773 0.6702 4.2750 24 6 4.3256 0.8327 5.6020 25 6 3.9151 -0.2572 6.3466 26 6 3.8558 -1.5095 5.7641 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6055 -0.2619 2.1368 35 1 3.1263 -0.6445 1.2950 36 1 2.0698 -2.6550 0.3000 37 1 0.5489 -2.2724 1.1419 38 1 1.9992 -4.8735 3.3265 39 1 0.5458 -4.3596 2.4371 40 1 1.9987 -4.8732 1.5463 41 1 3.9761 -2.0928 1.9799 42 1 5.9713 -3.6519 4.7588 43 1 6.1773 -3.0499 3.0965 44 1 8.5837 -5.8258 3.3382 45 1 4.9008 -0.7104 2.6581 46 1 4.9977 1.5218 3.6931 47 1 4.3713 1.8112 6.0568 48 1 3.6407 -0.1304 7.3834 49 1 3.5349 -2.3610 6.3458 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358337974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:34 Heat of formation + Delta-G solvation = -23.750566 kcal Electronic energy + Delta-G solvation = -23955.899101 eV Core-core repulsion = 20880.690906 eV Total energy + Delta-G solvation = -3075.208195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66050 -38.75818 -37.06943 -35.20180 -33.84265 -31.80592 -30.76581 -30.05879 -29.56939 -27.96848 -26.24074 -24.62988 -23.73909 -23.25761 -21.26766 -20.96256 -20.77656 -18.61694 -17.75696 -16.88303 -16.56654 -16.21362 -15.97148 -15.71085 -15.47370 -14.98491 -14.69467 -14.42240 -14.26027 -14.18498 -13.95587 -13.70920 -13.51690 -13.30603 -13.16701 -12.97494 -12.85767 -12.64127 -12.43518 -12.37382 -12.26412 -12.13052 -12.00639 -11.91664 -11.68670 -11.48001 -11.37510 -11.26533 -11.07457 -11.06134 -10.48700 -9.77750 -9.50880 -9.04926 -8.08612 -6.13577 0.52023 0.54041 1.41035 1.41992 1.55047 2.47723 2.93936 3.23449 3.45119 3.77867 3.93963 3.99354 4.04464 4.06433 4.19329 4.30188 4.31204 4.35170 4.49512 4.55344 4.63146 4.69498 4.75167 4.80601 4.85710 4.89048 4.92404 4.96793 5.02692 5.03418 5.11404 5.16207 5.18241 5.18603 5.24812 5.31375 5.37784 5.47730 5.53296 5.56347 5.57641 5.61460 5.62997 5.64681 5.78114 5.90774 6.17394 6.35140 6.52207 6.75577 7.00164 7.51866 9.03780 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.005406 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.011512 B = 5178.456410 C = 6642.812208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.109 4.109 5 C -0.112 4.112 6 C 0.087 3.913 7 H 0.031 0.969 8 C -0.134 4.134 9 N -0.670 5.670 10 C 0.146 3.854 11 H 0.061 0.939 12 C 0.053 3.947 13 C -0.493 4.493 14 H 0.060 0.940 15 C -0.006 4.006 16 N -0.941 5.941 17 Si 0.957 3.043 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.135 4.135 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.336 0.664 42 H -0.016 1.016 43 H -0.012 1.012 44 H 0.258 0.742 45 H 0.112 0.888 46 H 0.142 0.858 47 H 0.149 0.851 48 H 0.143 0.857 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.828 14.327 -2.136 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.147 4.147 5 C -0.150 4.150 6 C -0.023 4.023 7 H 0.049 0.951 8 C -0.192 4.192 9 N -0.303 5.303 10 C 0.036 3.964 11 H 0.080 0.920 12 C 0.015 3.985 13 C -0.532 4.532 14 H 0.079 0.921 15 C -0.202 4.202 16 N -0.584 5.584 17 Si 0.783 3.217 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.114 4.114 22 C -0.146 4.146 23 C -0.136 4.136 24 C -0.148 4.148 25 C -0.138 4.138 26 C -0.154 4.154 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.158 0.842 42 H 0.002 0.998 43 H 0.006 0.994 44 H 0.066 0.934 45 H 0.130 0.870 46 H 0.159 0.841 47 H 0.167 0.833 48 H 0.161 0.839 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.628 13.600 -2.296 20.105 hybrid contribution 0.577 -0.400 0.203 0.731 sum -14.052 13.199 -2.094 19.392 Atomic orbital electron populations 1.21863 0.94579 1.01975 1.01833 1.21085 0.96454 0.96222 0.97523 1.21823 1.00792 0.95720 1.01948 1.21626 1.00091 0.94841 0.98144 1.21750 1.01525 0.94790 0.96928 1.21517 0.87486 0.95937 0.97350 0.95078 1.21762 1.00120 0.96082 1.01266 1.60631 1.06944 1.45973 1.16766 1.20458 0.97052 0.90466 0.88436 0.92042 1.18863 0.90786 0.94904 0.93918 1.21480 0.93095 0.98287 1.40290 0.92135 1.25862 0.95278 1.02444 0.96584 1.70122 0.98579 1.38375 1.51277 0.85510 0.78282 0.80130 0.77757 1.18837 1.20955 1.20875 1.20976 0.98260 0.96671 0.95481 1.20980 1.00567 0.93179 0.99885 1.21364 0.99477 0.96811 0.95994 1.21437 0.99538 0.99704 0.94157 1.21407 0.99453 0.92184 1.00762 1.21229 1.01330 0.98364 0.94467 0.92136 0.92398 0.92817 0.91584 0.93158 0.91952 0.92733 0.92633 0.93194 0.91931 0.89851 0.94688 0.90925 0.93240 0.84228 0.99780 0.99360 0.93355 0.87037 0.84052 0.83341 0.83886 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.95 71.98 0.64 -1.70 16 2 C -0.09 -1.77 2.92 -10.79 -0.03 -1.80 16 3 C -0.15 -2.49 9.19 71.98 0.66 -1.83 16 4 C -0.11 -2.47 4.51 30.59 0.14 -2.34 16 5 C -0.11 -2.76 4.56 30.59 0.14 -2.62 16 6 C 0.09 2.67 2.46 44.91 0.11 2.78 16 7 H 0.03 0.98 7.64 -2.38 -0.02 0.97 16 8 C -0.13 -4.19 9.40 71.98 0.68 -3.51 16 9 N -0.67 -25.35 5.76 -473.33 -2.72 -28.07 16 10 C 0.15 6.16 1.98 44.17 0.09 6.25 16 11 H 0.06 2.68 6.98 -2.38 -0.02 2.67 16 12 C 0.05 2.85 4.63 29.85 0.14 2.98 16 13 C -0.49 -28.49 8.84 25.60 0.23 -28.27 16 14 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 15 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 16 N -0.94 -59.00 13.29 21.45 0.28 -58.72 16 17 Si 0.96 46.24 29.54 68.60 2.03 48.27 16 18 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 21 C -0.11 -4.08 4.61 -19.87 -0.09 -4.17 16 22 C -0.13 -4.17 8.90 22.27 0.20 -3.97 16 23 C -0.12 -3.14 10.05 22.27 0.22 -2.91 16 24 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 25 C -0.12 -3.17 10.05 22.27 0.22 -2.94 16 26 C -0.14 -4.43 9.67 22.27 0.22 -4.21 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.93 6.57 -2.39 -0.02 0.91 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 1.27 5.74 -2.39 -0.01 1.25 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.74 6.57 -2.39 -0.02 1.73 16 38 H 0.03 1.22 7.43 -2.39 -0.02 1.20 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.34 12.08 4.16 -89.69 -0.37 11.71 16 42 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 43 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.11 3.68 6.07 -2.91 -0.02 3.67 16 46 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 47 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 48 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 49 H 0.12 3.71 8.04 -2.91 -0.02 3.69 16 Total: -1.00 -66.66 383.22 4.35 -62.32 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.51 Total: 27.28 kcal Atomic # 6 Polarization: -55.33 SS G_CDS: 4.25 Total: -51.08 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.44 Total: -86.79 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -66.66 4.35 -62.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358337974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.565 kcal (2) G-P(sol) polarization free energy of solvation -66.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds