Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47571 * 2 1 4 4 C 1.52997 * 109.47605 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47373 * 180.02562 * 4 3 2 6 6 H 1.08990 * 109.46975 * 304.99806 * 5 4 3 7 7 C 1.53007 * 109.46948 * 184.99685 * 5 4 3 8 8 C 1.52998 * 109.46724 * 172.98798 * 7 5 4 9 9 N 1.46906 * 109.47054 * 65.00033 * 5 4 3 10 10 C 1.46906 * 110.99777 * 214.79981 * 9 5 4 11 11 H 1.09000 * 109.46755 * 319.39696 * 10 9 5 12 12 C 1.52993 * 109.46980 * 199.39500 * 10 9 5 13 13 C 1.50694 * 109.47445 * 65.00009 * 12 10 9 14 14 H 1.08002 * 120.00104 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00128 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00370 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99958 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47613 * 89.99693 * 17 15 13 19 19 H 1.48505 * 109.46897 * 209.99894 * 17 15 13 20 20 H 1.48505 * 109.46995 * 329.99545 * 17 15 13 21 21 C 1.50701 * 109.46941 * 79.39188 * 10 9 5 22 22 C 1.38228 * 120.00186 * 39.72862 * 21 10 9 23 23 C 1.38236 * 120.00090 * 179.78372 * 22 21 10 24 24 C 1.38236 * 120.00125 * 0.44400 * 23 22 21 25 25 C 1.38233 * 119.99355 * 359.80983 * 24 23 22 26 26 C 1.38228 * 120.00605 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47247 * 59.99275 * 1 2 3 28 28 H 1.08993 * 109.47517 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46664 * 299.99861 * 1 2 3 30 30 H 1.09003 * 109.46783 * 240.00603 * 2 1 3 31 31 H 1.09002 * 109.47511 * 120.00576 * 2 1 3 32 32 H 1.09003 * 109.46575 * 60.00476 * 3 2 1 33 33 H 1.09002 * 109.47173 * 300.00783 * 3 2 1 34 34 H 1.08997 * 109.47352 * 59.99412 * 4 3 2 35 35 H 1.09006 * 109.46594 * 300.00106 * 4 3 2 36 36 H 1.08995 * 109.47040 * 292.98587 * 7 5 4 37 37 H 1.09001 * 109.46996 * 52.98785 * 7 5 4 38 38 H 1.08997 * 109.47619 * 60.76600 * 8 7 5 39 39 H 1.08996 * 109.47016 * 180.77311 * 8 7 5 40 40 H 1.09011 * 109.47116 * 300.76473 * 8 7 5 41 41 H 1.00899 * 111.00098 * 90.84563 * 9 5 4 42 42 H 1.09002 * 109.46816 * 184.99792 * 12 10 9 43 43 H 1.09001 * 109.47253 * 304.99322 * 12 10 9 44 44 H 0.97002 * 120.00549 * 180.02562 * 16 15 13 45 45 H 1.08000 * 119.99920 * 359.97438 * 22 21 10 46 46 H 1.08007 * 119.99888 * 180.27575 * 23 22 21 47 47 H 1.07998 * 119.99957 * 179.83078 * 24 23 22 48 48 H 1.08007 * 119.99385 * 179.97438 * 25 24 23 49 49 H 1.08006 * 120.00160 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6452 3.4244 -0.8413 7 6 5.6050 2.8867 -0.1263 8 6 6.1004 4.3236 -0.3014 9 7 3.6920 3.5409 1.2558 10 6 3.3874 4.9611 1.0356 11 1 4.1108 5.3839 0.3384 12 6 3.4633 5.7113 2.3668 13 6 4.8800 5.6824 2.8797 14 1 5.6494 5.1795 2.3127 15 6 5.1941 6.2987 4.0724 16 7 4.2575 6.9123 4.7621 17 14 6.9504 6.2634 4.7078 18 1 7.6881 7.4434 4.1898 19 1 6.9404 6.2984 6.1924 20 1 7.6188 5.0201 4.2465 21 6 2.0001 5.0942 0.4623 22 6 0.9790 4.2880 0.9292 23 6 -0.2946 4.4132 0.4064 24 6 -0.5450 5.3383 -0.5898 25 6 0.4774 6.1408 -1.0604 26 6 1.7499 6.0188 -0.5345 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.9331 0.9287 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 6.0446 2.4580 0.7742 37 1 5.8985 2.2931 -0.9921 38 1 5.8187 4.9139 0.5705 39 1 7.1854 4.3237 -0.4051 40 1 5.6501 4.7570 -1.1946 41 1 4.4077 3.4293 1.9583 42 1 3.1514 6.7453 2.2194 43 1 2.8046 5.2329 3.0916 44 1 4.4786 7.3463 5.6010 45 1 1.1754 3.5624 1.7046 46 1 -1.0934 3.7863 0.7744 47 1 -1.5393 5.4342 -1.0002 48 1 0.2819 6.8634 -1.8390 49 1 2.5488 6.6456 -0.9025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358344149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -13.225410 kcal Electronic energy + Delta-G solvation = -24362.828000 eV Core-core repulsion = 21288.076210 eV Total energy + Delta-G solvation = -3074.751790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.20065 -37.44535 -35.15424 -33.57835 -32.22736 -30.56070 -30.27218 -29.56540 -28.15384 -25.51501 -24.28064 -22.38962 -22.14029 -21.81880 -20.55103 -19.96378 -19.42854 -16.69135 -16.18820 -15.62680 -15.07446 -14.76722 -14.60933 -14.21347 -14.08592 -13.80397 -13.51593 -13.14476 -12.96422 -12.76584 -12.46375 -12.36728 -12.05907 -12.01866 -11.80206 -11.47942 -11.33103 -11.06462 -11.05480 -10.83696 -10.80145 -10.69113 -10.56977 -10.46410 -10.36151 -10.21467 -10.05853 -10.00745 -9.46397 -9.05009 -8.42742 -8.36197 -8.02695 -7.56396 -6.04176 -4.07814 1.90516 1.95796 3.28060 3.35631 3.36891 4.32967 4.42389 4.88631 4.91789 5.17464 5.29757 5.32817 5.36659 5.38887 5.40893 5.47974 5.49074 5.58029 5.63266 5.73646 5.87005 5.90512 5.95417 6.01376 6.06010 6.09440 6.15907 6.17061 6.22607 6.29202 6.33257 6.36111 6.47174 6.48747 6.51456 6.59775 6.69405 6.74834 6.79583 6.84625 6.96067 7.02498 7.27201 7.51773 7.58947 7.65426 7.96194 8.06760 8.28576 8.34987 8.98468 9.56559 11.06399 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.005628 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.237441 B = 4973.647520 C = 5904.229864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.103 4.103 5 C 0.086 3.914 6 H 0.066 0.934 7 C -0.146 4.146 8 C -0.170 4.170 9 N -0.671 5.671 10 C 0.120 3.880 11 H 0.048 0.952 12 C 0.030 3.970 13 C -0.524 4.524 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.052 4.052 22 C -0.085 4.085 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.128 4.128 26 C -0.125 4.125 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.357 0.643 42 H 0.020 0.980 43 H 0.027 0.973 44 H 0.261 0.739 45 H 0.130 0.870 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 -9.028 -11.267 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.025 4.025 6 H 0.084 0.916 7 C -0.185 4.185 8 C -0.227 4.227 9 N -0.304 5.304 10 C 0.011 3.989 11 H 0.066 0.934 12 C -0.007 4.007 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.052 4.052 22 C -0.103 4.103 23 C -0.148 4.148 24 C -0.156 4.156 25 C -0.146 4.146 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.179 0.821 42 H 0.038 0.962 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.147 0.853 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.798 -9.126 -11.121 15.510 hybrid contribution 1.866 0.510 0.228 1.948 sum -3.932 -8.616 -10.893 14.434 Atomic orbital electron populations 1.21751 0.96386 1.00778 1.01830 1.21556 0.95475 0.98053 1.01114 1.21631 0.95251 0.95218 1.02996 1.21536 0.95914 0.96017 1.00610 1.21608 0.92135 0.95029 0.93678 0.91579 1.22199 0.97477 0.97381 1.01435 1.22120 1.00121 0.97257 1.03224 1.60509 1.48677 1.13211 1.08032 1.20816 0.90123 0.88429 0.99517 0.93430 1.19208 0.97195 0.94858 0.89423 1.21193 0.94231 1.35071 1.05732 0.92336 1.24958 0.96784 0.95316 0.96828 1.69959 1.32447 1.35359 1.14944 0.86684 0.85319 0.78392 0.78139 1.20802 1.21266 1.19855 1.20221 0.96868 0.94176 0.93962 1.21052 0.91514 0.98477 0.99243 1.21098 0.96992 0.99040 0.97683 1.20942 0.98414 0.97654 0.98614 1.20947 0.93375 0.99784 1.00534 1.21033 0.96762 0.99098 0.97479 0.93046 0.93507 0.92655 0.93027 0.92433 0.89832 0.93081 0.93197 0.92228 0.91914 0.92779 0.89487 0.93586 0.93481 0.82107 0.96164 0.95475 0.92955 0.85270 0.87086 0.87281 0.87134 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.12 -1.41 5.93 -26.73 -0.16 -1.57 16 3 C -0.11 -1.48 4.64 -26.73 -0.12 -1.61 16 4 C -0.10 -1.36 4.89 -26.73 -0.13 -1.49 16 5 C 0.09 1.28 2.02 -67.71 -0.14 1.15 16 6 H 0.07 1.05 7.36 -51.93 -0.38 0.67 16 7 C -0.15 -2.10 5.32 -26.73 -0.14 -2.24 16 8 C -0.17 -2.65 8.66 37.16 0.32 -2.33 16 9 N -0.67 -11.66 4.64 -100.95 -0.47 -12.13 16 10 C 0.12 2.33 1.46 -68.86 -0.10 2.23 16 11 H 0.05 0.94 5.23 -51.93 -0.27 0.67 16 12 C 0.03 0.74 4.59 -27.89 -0.13 0.61 16 13 C -0.52 -13.52 8.05 -34.44 -0.28 -13.80 16 14 H 0.06 1.44 5.19 -52.49 -0.27 1.16 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 17 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.05 -0.93 4.37 -104.63 -0.46 -1.38 16 22 C -0.08 -1.43 7.81 -39.59 -0.31 -1.74 16 23 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 24 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 16 25 C -0.13 -1.91 10.05 -39.59 -0.40 -2.30 16 26 C -0.13 -2.10 9.67 -39.58 -0.38 -2.48 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.22 5.12 -51.93 -0.27 0.95 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.93 7.98 -51.93 -0.41 0.51 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.60 3.74 -51.93 -0.19 1.41 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.69 8.11 -51.92 -0.42 0.27 16 41 H 0.36 6.85 6.70 -39.29 -0.26 6.59 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.13 2.25 6.35 -52.49 -0.33 1.92 16 46 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 47 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 48 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 49 H 0.11 1.80 8.04 -52.48 -0.42 1.38 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -27.02 375.69 -10.75 -37.77 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -8.72 Total: 9.18 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -2.95 Total: -31.25 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.27 Total: -37.20 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.02 -10.75 -37.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358344149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.549 kcal (2) G-P(sol) polarization free energy of solvation -27.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds