Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47571 * 2 1 4 4 C 1.52997 * 109.47605 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47373 * 180.02562 * 4 3 2 6 6 H 1.08990 * 109.46975 * 304.99806 * 5 4 3 7 7 C 1.53007 * 109.46948 * 184.99685 * 5 4 3 8 8 C 1.52998 * 109.46724 * 172.98798 * 7 5 4 9 9 N 1.46906 * 109.47054 * 65.00033 * 5 4 3 10 10 C 1.46906 * 110.99777 * 214.79981 * 9 5 4 11 11 H 1.09000 * 109.46755 * 319.39696 * 10 9 5 12 12 C 1.52993 * 109.46980 * 199.39500 * 10 9 5 13 13 C 1.50694 * 109.47445 * 65.00009 * 12 10 9 14 14 H 1.08002 * 120.00104 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00128 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00370 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99958 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47613 * 89.99693 * 17 15 13 19 19 H 1.48505 * 109.46897 * 209.99894 * 17 15 13 20 20 H 1.48505 * 109.46995 * 329.99545 * 17 15 13 21 21 C 1.50701 * 109.46941 * 79.39188 * 10 9 5 22 22 C 1.38228 * 120.00186 * 39.72862 * 21 10 9 23 23 C 1.38236 * 120.00090 * 179.78372 * 22 21 10 24 24 C 1.38236 * 120.00125 * 0.44400 * 23 22 21 25 25 C 1.38233 * 119.99355 * 359.80983 * 24 23 22 26 26 C 1.38228 * 120.00605 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47247 * 59.99275 * 1 2 3 28 28 H 1.08993 * 109.47517 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46664 * 299.99861 * 1 2 3 30 30 H 1.09003 * 109.46783 * 240.00603 * 2 1 3 31 31 H 1.09002 * 109.47511 * 120.00576 * 2 1 3 32 32 H 1.09003 * 109.46575 * 60.00476 * 3 2 1 33 33 H 1.09002 * 109.47173 * 300.00783 * 3 2 1 34 34 H 1.08997 * 109.47352 * 59.99412 * 4 3 2 35 35 H 1.09006 * 109.46594 * 300.00106 * 4 3 2 36 36 H 1.08995 * 109.47040 * 292.98587 * 7 5 4 37 37 H 1.09001 * 109.46996 * 52.98785 * 7 5 4 38 38 H 1.08997 * 109.47619 * 60.76600 * 8 7 5 39 39 H 1.08996 * 109.47016 * 180.77311 * 8 7 5 40 40 H 1.09011 * 109.47116 * 300.76473 * 8 7 5 41 41 H 1.00899 * 111.00098 * 90.84563 * 9 5 4 42 42 H 1.09002 * 109.46816 * 184.99792 * 12 10 9 43 43 H 1.09001 * 109.47253 * 304.99322 * 12 10 9 44 44 H 0.97002 * 120.00549 * 180.02562 * 16 15 13 45 45 H 1.08000 * 119.99920 * 359.97438 * 22 21 10 46 46 H 1.08007 * 119.99888 * 180.27575 * 23 22 21 47 47 H 1.07998 * 119.99957 * 179.83078 * 24 23 22 48 48 H 1.08007 * 119.99385 * 179.97438 * 25 24 23 49 49 H 1.08006 * 120.00160 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6452 3.4244 -0.8413 7 6 5.6050 2.8867 -0.1263 8 6 6.1004 4.3236 -0.3014 9 7 3.6920 3.5409 1.2558 10 6 3.3874 4.9611 1.0356 11 1 4.1108 5.3839 0.3384 12 6 3.4633 5.7113 2.3668 13 6 4.8800 5.6824 2.8797 14 1 5.6494 5.1795 2.3127 15 6 5.1941 6.2987 4.0724 16 7 4.2575 6.9123 4.7621 17 14 6.9504 6.2634 4.7078 18 1 7.6881 7.4434 4.1898 19 1 6.9404 6.2984 6.1924 20 1 7.6188 5.0201 4.2465 21 6 2.0001 5.0942 0.4623 22 6 0.9790 4.2880 0.9292 23 6 -0.2946 4.4132 0.4064 24 6 -0.5450 5.3383 -0.5898 25 6 0.4774 6.1408 -1.0604 26 6 1.7499 6.0188 -0.5345 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.9331 0.9287 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 6.0446 2.4580 0.7742 37 1 5.8985 2.2931 -0.9921 38 1 5.8187 4.9139 0.5705 39 1 7.1854 4.3237 -0.4051 40 1 5.6501 4.7570 -1.1946 41 1 4.4077 3.4293 1.9583 42 1 3.1514 6.7453 2.2194 43 1 2.8046 5.2329 3.0916 44 1 4.4786 7.3463 5.6010 45 1 1.1754 3.5624 1.7046 46 1 -1.0934 3.7863 0.7744 47 1 -1.5393 5.4342 -1.0002 48 1 0.2819 6.8634 -1.8390 49 1 2.5488 6.6456 -0.9025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358344149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -24.750410 kcal Electronic energy + Delta-G solvation = -24363.327762 eV Core-core repulsion = 21288.076210 eV Total energy + Delta-G solvation = -3075.251551 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53013 -38.68712 -36.38245 -35.12932 -33.94233 -31.75435 -31.46419 -30.88517 -29.81507 -26.85932 -25.88669 -23.71236 -23.37963 -23.18653 -21.58251 -21.18989 -20.90473 -18.59558 -17.52506 -16.98636 -16.57239 -16.21175 -15.95145 -15.47002 -15.34508 -15.07318 -14.56469 -14.47210 -14.32488 -14.13574 -13.84977 -13.70699 -13.59913 -13.18404 -13.02195 -12.93222 -12.78555 -12.58963 -12.57379 -12.36717 -12.20689 -11.92485 -11.88442 -11.83774 -11.67019 -11.44968 -11.23968 -11.15244 -11.11411 -10.88606 -10.54272 -9.61835 -9.36790 -8.97524 -8.15038 -6.24736 0.64366 0.71009 1.40579 1.41306 1.51159 2.41978 3.07434 3.17543 3.53888 3.82019 4.14020 4.18110 4.20888 4.25112 4.30040 4.33658 4.39174 4.45290 4.45622 4.61254 4.65309 4.79269 4.82428 4.86066 4.87472 4.91317 4.96201 5.05845 5.08357 5.14171 5.16888 5.22340 5.28703 5.30535 5.32923 5.35167 5.38895 5.46174 5.54314 5.61833 5.67198 5.73141 5.77024 5.81118 5.88518 5.97933 6.23820 6.31950 6.56367 6.78667 6.91498 7.43887 8.96514 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.005628 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.237441 B = 4973.647520 C = 5904.229864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.107 4.107 4 C -0.097 4.097 5 C 0.090 3.910 6 H 0.058 0.942 7 C -0.141 4.141 8 C -0.167 4.167 9 N -0.668 5.668 10 C 0.139 3.861 11 H 0.042 0.958 12 C 0.043 3.957 13 C -0.524 4.524 14 H 0.071 0.929 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.954 3.046 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.260 1.260 21 C -0.076 4.076 22 C -0.094 4.094 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.141 4.141 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.344 0.656 42 H -0.017 1.017 43 H -0.006 1.006 44 H 0.260 0.740 45 H 0.116 0.884 46 H 0.134 0.866 47 H 0.143 0.857 48 H 0.139 0.861 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 -10.469 -13.154 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.020 4.020 6 H 0.076 0.924 7 C -0.180 4.180 8 C -0.224 4.224 9 N -0.300 5.300 10 C 0.029 3.971 11 H 0.060 0.940 12 C 0.006 3.994 13 C -0.562 4.562 14 H 0.089 0.911 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.780 3.220 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.184 1.184 21 C -0.077 4.077 22 C -0.112 4.112 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.145 4.145 26 C -0.160 4.160 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.164 0.836 42 H 0.001 0.999 43 H 0.012 0.988 44 H 0.069 0.931 45 H 0.134 0.866 46 H 0.152 0.848 47 H 0.161 0.839 48 H 0.157 0.843 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.895 -10.582 -13.033 17.794 hybrid contribution 1.816 0.970 0.758 2.194 sum -4.079 -9.612 -12.276 16.116 Atomic orbital electron populations 1.21735 0.95746 1.01593 1.01531 1.21522 0.96063 0.96676 1.01588 1.21533 0.95087 0.96240 1.01633 1.21502 0.96035 0.94629 1.01356 1.21634 0.92763 0.95708 0.91879 0.92399 1.22160 0.96667 0.96871 1.02302 1.22055 1.00941 0.97574 1.01870 1.60528 1.48358 1.11988 1.09116 1.20427 0.91486 0.88877 0.96297 0.94019 1.18972 0.95851 0.93058 0.91527 1.21592 0.95099 1.33981 1.05541 0.91063 1.25836 1.00868 0.95172 0.97343 1.70111 1.34752 1.36875 1.15499 0.85613 0.80361 0.78872 0.77203 1.20403 1.21407 1.18379 1.20149 0.96239 0.95854 0.95461 1.21004 0.92448 0.98411 0.99374 1.21379 0.96557 0.99400 0.97551 1.21354 0.99761 0.96303 0.97577 1.21284 0.92467 1.00101 1.00692 1.21183 0.98078 0.99013 0.97724 0.92953 0.92146 0.93345 0.91928 0.92502 0.91743 0.93862 0.91265 0.92480 0.92259 0.90384 0.92672 0.92437 0.93035 0.83554 0.99866 0.98783 0.93103 0.86599 0.84781 0.83886 0.84334 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.91 71.98 0.71 -2.15 16 2 C -0.12 -2.53 5.93 30.59 0.18 -2.34 16 3 C -0.11 -2.71 4.64 30.59 0.14 -2.57 16 4 C -0.10 -2.44 4.89 30.59 0.15 -2.29 16 5 C 0.09 2.64 2.02 44.92 0.09 2.74 16 6 H 0.06 1.82 7.36 -2.39 -0.02 1.80 16 7 C -0.14 -3.87 5.32 30.60 0.16 -3.70 16 8 C -0.17 -5.10 8.66 71.98 0.62 -4.47 16 9 N -0.67 -23.92 4.64 -473.30 -2.19 -26.12 16 10 C 0.14 5.62 1.46 44.17 0.06 5.68 16 11 H 0.04 1.72 5.23 -2.39 -0.01 1.71 16 12 C 0.04 2.24 4.59 29.84 0.14 2.37 16 13 C -0.52 -28.02 8.05 25.60 0.21 -27.81 16 14 H 0.07 3.57 5.19 -2.91 -0.02 3.56 16 15 C 0.01 0.32 5.46 84.65 0.46 0.78 16 16 N -0.93 -56.29 13.29 21.44 0.28 -56.00 16 17 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 C -0.08 -2.83 4.37 -19.87 -0.09 -2.91 16 22 C -0.09 -3.24 7.81 22.27 0.17 -3.06 16 23 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 24 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 25 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 26 C -0.14 -4.76 9.67 22.27 0.22 -4.54 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.98 8.14 -2.38 -0.02 0.97 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.89 5.12 -2.39 -0.01 1.88 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.06 1.68 7.98 -2.39 -0.02 1.66 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 2.04 3.74 -2.39 -0.01 2.03 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.49 8.11 -2.38 -0.02 1.47 16 41 H 0.34 13.65 6.70 -89.69 -0.60 13.05 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.12 4.23 6.35 -2.91 -0.02 4.21 16 46 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 47 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 48 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 49 H 0.11 3.67 8.04 -2.91 -0.02 3.64 16 Total: -1.00 -60.58 375.69 4.32 -56.26 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.30 Total: 34.65 kcal Atomic # 6 Polarization: -58.22 SS G_CDS: 3.91 Total: -54.32 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -1.91 Total: -82.12 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -60.58 4.32 -56.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358344149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.511 kcal (2) G-P(sol) polarization free energy of solvation -60.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds