Wall clock time and date at job start Tue Mar 31 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 C 1.53006 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47238 * 175.00108 * 4 3 2 6 6 C 1.53006 * 109.47153 * 295.24957 * 5 4 3 7 7 C 1.52997 * 109.46988 * 177.67226 * 6 5 4 8 8 N 1.46904 * 109.46632 * 294.99730 * 4 3 2 9 9 C 1.46904 * 110.99673 * 156.66196 * 8 4 3 10 10 H 1.08997 * 109.47026 * 34.72421 * 9 8 4 11 11 C 1.53004 * 109.46744 * 154.72113 * 9 8 4 12 12 C 1.50696 * 109.47490 * 295.00141 * 11 9 8 13 13 H 1.08006 * 119.99538 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00145 * 179.97438 * 12 11 9 15 15 N 1.31514 * 119.99864 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00058 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47038 * 90.00044 * 16 14 12 18 18 H 1.48496 * 109.46826 * 209.99896 * 16 14 12 19 19 H 1.48491 * 109.47002 * 329.99671 * 16 14 12 20 20 C 1.50693 * 109.47074 * 274.72284 * 9 8 4 21 21 C 1.38236 * 120.00271 * 319.72271 * 20 9 8 22 22 C 1.38239 * 120.00079 * 179.80960 * 21 20 9 23 23 C 1.38237 * 119.99861 * 0.40389 * 22 21 20 24 24 C 1.38235 * 119.99819 * 359.85535 * 23 22 21 25 25 C 1.38228 * 120.00243 * 359.95400 * 24 23 22 26 26 H 1.08998 * 109.47196 * 59.99916 * 1 2 3 27 27 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46617 * 300.00084 * 1 2 3 29 29 H 1.09001 * 109.46955 * 240.00299 * 2 1 3 30 30 H 1.08998 * 109.47196 * 120.00084 * 2 1 3 31 31 H 1.08998 * 109.47642 * 60.00011 * 3 2 1 32 32 H 1.08998 * 109.47153 * 300.00111 * 3 2 1 33 33 H 1.08997 * 109.47486 * 54.99404 * 4 3 2 34 34 H 1.09001 * 109.47502 * 55.25136 * 5 4 3 35 35 H 1.09006 * 109.47372 * 175.24938 * 5 4 3 36 36 H 1.08993 * 109.46746 * 297.67172 * 6 5 4 37 37 H 1.08999 * 109.46956 * 57.67269 * 6 5 4 38 38 H 1.09005 * 109.46797 * 180.02562 * 7 6 5 39 39 H 1.08993 * 109.47333 * 299.99586 * 7 6 5 40 40 H 1.08999 * 109.47237 * 60.00215 * 7 6 5 41 41 H 1.00893 * 111.00118 * 280.61901 * 8 4 3 42 42 H 1.09005 * 109.47058 * 55.00230 * 11 9 8 43 43 H 1.09001 * 109.46693 * 174.99986 * 11 9 8 44 44 H 0.97003 * 120.00098 * 180.02562 * 15 14 12 45 45 H 1.08005 * 120.00078 * 0.02562 * 21 20 9 46 46 H 1.07997 * 119.99865 * 180.23627 * 22 21 20 47 47 H 1.08001 * 119.99445 * 179.83456 * 23 22 21 48 48 H 1.08000 * 119.99515 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.00123 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8794 -0.1263 6 6 3.6693 3.4493 -1.4856 7 6 4.1289 4.9050 -1.5882 8 7 4.0601 0.8570 1.2544 9 6 5.4228 0.3322 1.0936 10 1 5.9774 0.9669 0.4025 11 6 6.1277 0.3190 2.4515 12 6 6.3005 1.7335 2.9417 13 1 5.9436 2.5594 2.3441 14 6 6.9141 1.9733 4.1528 15 7 7.0653 3.2078 4.5803 16 14 7.5319 0.5448 5.1859 17 1 8.9372 0.2382 4.8164 18 1 7.4665 0.9093 6.6239 19 1 6.6833 -0.6483 4.9386 20 6 5.3595 -1.0706 0.5467 21 6 4.3956 -1.9487 1.0058 22 6 4.3351 -3.2343 0.5013 23 6 5.2438 -3.6444 -0.4563 24 6 6.2111 -2.7680 -0.9115 25 6 6.2691 -1.4812 -0.4099 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9331 0.8531 -0.8426 34 1 3.6493 3.4887 0.6682 35 1 5.1668 2.8880 -0.0421 36 1 4.1337 2.8649 -2.2798 37 1 2.5850 3.4026 -1.5865 38 1 3.8359 5.3111 -2.5564 39 1 3.6645 5.4894 -0.7940 40 1 5.2132 4.9517 -1.4872 41 1 4.0173 1.5274 2.0071 42 1 5.5272 -0.2427 3.1671 43 1 7.1053 -0.1519 2.3488 44 1 7.4973 3.3766 5.4322 45 1 3.6875 -1.6292 1.7562 46 1 3.5796 -3.9190 0.8572 47 1 5.1982 -4.6496 -0.8485 48 1 6.9213 -3.0886 -1.6593 49 1 7.0245 -0.7964 -0.7658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358355891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:26 Heat of formation + Delta-G solvation = -15.310182 kcal Electronic energy + Delta-G solvation = -24040.229295 eV Core-core repulsion = 20965.387103 eV Total energy + Delta-G solvation = -3074.842192 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.19337 -37.59918 -34.83376 -33.80337 -32.50224 -31.11629 -30.47074 -29.37925 -27.71886 -26.08563 -24.46144 -22.27650 -21.76110 -21.61136 -21.11637 -19.89242 -19.50950 -16.98568 -16.25404 -15.39317 -15.14550 -14.85513 -14.51917 -14.50074 -14.12502 -13.84698 -13.60863 -13.18607 -12.97104 -12.79809 -12.61199 -12.44699 -12.27526 -12.19135 -11.90432 -11.75987 -11.45151 -11.26427 -11.06323 -10.95996 -10.75325 -10.71249 -10.61026 -10.45844 -10.30237 -10.20876 -9.93835 -9.86148 -9.74023 -9.24672 -8.59020 -8.49762 -8.16592 -7.67195 -6.09824 -4.08659 1.79081 1.84464 3.29297 3.37383 3.42654 4.22942 4.42135 4.79216 5.01262 5.16319 5.25515 5.26752 5.27378 5.30907 5.34778 5.38691 5.44137 5.49060 5.60234 5.69443 5.83000 5.85840 5.94980 5.96362 6.00610 6.02712 6.07526 6.16461 6.19758 6.20435 6.21852 6.30356 6.35772 6.40038 6.46239 6.54612 6.55873 6.64921 6.75634 6.76457 6.84616 6.90611 7.14486 7.15603 7.27054 7.44302 7.71566 7.90540 8.23805 8.44075 8.92025 9.52918 11.02679 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.006748 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.680360 B = 4148.231822 C = 5804.287512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.105 4.105 4 C 0.090 3.910 5 C -0.149 4.149 6 C -0.120 4.120 7 C -0.152 4.152 8 N -0.673 5.673 9 C 0.137 3.863 10 H 0.046 0.954 11 C -0.009 4.009 12 C -0.523 4.523 13 H 0.073 0.927 14 C 0.072 3.928 15 N -0.900 5.900 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.264 1.264 20 C -0.055 4.055 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.124 4.124 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.360 0.640 42 H 0.027 0.973 43 H 0.016 0.984 44 H 0.263 0.737 45 H 0.128 0.872 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 -6.756 -11.755 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.143 4.143 4 C -0.020 4.020 5 C -0.189 4.189 6 C -0.158 4.158 7 C -0.209 4.209 8 N -0.306 5.306 9 C 0.027 3.973 10 H 0.064 0.936 11 C -0.047 4.047 12 C -0.561 4.561 13 H 0.091 0.909 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.704 3.296 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.188 1.188 20 C -0.056 4.056 21 C -0.105 4.105 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.143 4.143 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.183 0.817 42 H 0.045 0.955 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.705 -7.247 -11.678 16.269 hybrid contribution 1.065 0.198 0.571 1.224 sum -7.640 -7.049 -11.107 15.213 Atomic orbital electron populations 1.21799 0.97149 1.00830 1.01091 1.21422 0.94052 0.97213 1.02567 1.21607 0.94880 0.96743 1.01075 1.21567 0.94503 0.92576 0.93392 1.22351 1.01922 0.97542 0.97047 1.21530 1.00723 0.95876 0.97665 1.21775 1.01522 0.96756 1.00889 1.60573 1.22505 1.41384 1.06150 1.20368 0.89070 0.89515 0.98357 0.93601 1.19738 0.95141 0.98254 0.91565 1.21040 1.39167 0.91164 1.04695 0.90890 1.24958 0.95254 0.95319 0.97443 1.69906 1.43641 1.19135 1.21115 0.86824 0.79666 0.83593 0.79523 1.20426 1.21455 1.18826 1.20242 0.94109 0.96854 0.94419 1.21053 0.98024 0.92233 0.99209 1.21126 0.99261 0.96504 0.97966 1.20977 0.96624 0.99099 0.98810 1.20975 0.98929 0.94099 1.00563 1.21065 0.99293 0.96222 0.97710 0.93570 0.93417 0.93043 0.93103 0.90475 0.92193 0.92519 0.91467 0.91743 0.91490 0.92628 0.92095 0.93394 0.92800 0.92756 0.81730 0.95504 0.96565 0.92718 0.85369 0.86940 0.87137 0.86970 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.47 5.82 -26.73 -0.16 -1.62 16 3 C -0.11 -1.38 4.76 -26.73 -0.13 -1.51 16 4 C 0.09 1.35 1.88 -67.71 -0.13 1.22 16 5 C -0.15 -2.27 4.66 -26.73 -0.12 -2.40 16 6 C -0.12 -1.52 5.74 -26.73 -0.15 -1.68 16 7 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 8 N -0.67 -11.67 4.76 -100.95 -0.48 -12.15 16 9 C 0.14 2.60 1.99 -68.86 -0.14 2.46 16 10 H 0.05 0.92 6.84 -51.93 -0.36 0.56 16 11 C -0.01 -0.21 3.61 -27.88 -0.10 -0.32 16 12 C -0.52 -13.88 8.67 -34.44 -0.30 -14.18 16 13 H 0.07 2.05 7.74 -52.48 -0.41 1.65 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 16 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 20 C -0.06 -0.96 4.62 -104.63 -0.48 -1.44 16 21 C -0.09 -1.41 9.28 -39.58 -0.37 -1.78 16 22 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 23 C -0.14 -1.86 10.05 -39.58 -0.40 -2.25 16 24 C -0.13 -1.80 10.05 -39.59 -0.40 -2.20 16 25 C -0.12 -1.99 9.67 -39.59 -0.38 -2.37 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.09 7.27 -51.93 -0.38 0.72 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.68 6.29 -51.93 -0.33 0.36 16 33 H 0.07 1.05 7.66 -51.93 -0.40 0.66 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.18 7.25 -51.93 -0.38 0.80 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.72 6.35 -51.93 -0.33 0.39 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.36 7.06 6.99 -39.30 -0.27 6.79 16 42 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 43 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.13 2.12 7.29 -52.48 -0.38 1.74 16 46 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 48 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 49 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -27.73 383.45 -10.69 -38.41 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -9.08 Total: 8.36 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: -3.01 Total: -31.19 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.29 Total: -38.15 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -27.73 -10.69 -38.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358355891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.104 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds