Wall clock time and date at job start Tue Mar 31 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 C 1.53006 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47238 * 175.00108 * 4 3 2 6 6 C 1.53006 * 109.47153 * 295.24957 * 5 4 3 7 7 C 1.52997 * 109.46988 * 177.67226 * 6 5 4 8 8 N 1.46904 * 109.46632 * 294.99730 * 4 3 2 9 9 C 1.46904 * 110.99673 * 156.66196 * 8 4 3 10 10 H 1.08997 * 109.47026 * 34.72421 * 9 8 4 11 11 C 1.53004 * 109.46744 * 154.72113 * 9 8 4 12 12 C 1.50696 * 109.47490 * 295.00141 * 11 9 8 13 13 H 1.08006 * 119.99538 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00145 * 179.97438 * 12 11 9 15 15 N 1.31514 * 119.99864 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00058 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47038 * 90.00044 * 16 14 12 18 18 H 1.48496 * 109.46826 * 209.99896 * 16 14 12 19 19 H 1.48491 * 109.47002 * 329.99671 * 16 14 12 20 20 C 1.50693 * 109.47074 * 274.72284 * 9 8 4 21 21 C 1.38236 * 120.00271 * 319.72271 * 20 9 8 22 22 C 1.38239 * 120.00079 * 179.80960 * 21 20 9 23 23 C 1.38237 * 119.99861 * 0.40389 * 22 21 20 24 24 C 1.38235 * 119.99819 * 359.85535 * 23 22 21 25 25 C 1.38228 * 120.00243 * 359.95400 * 24 23 22 26 26 H 1.08998 * 109.47196 * 59.99916 * 1 2 3 27 27 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46617 * 300.00084 * 1 2 3 29 29 H 1.09001 * 109.46955 * 240.00299 * 2 1 3 30 30 H 1.08998 * 109.47196 * 120.00084 * 2 1 3 31 31 H 1.08998 * 109.47642 * 60.00011 * 3 2 1 32 32 H 1.08998 * 109.47153 * 300.00111 * 3 2 1 33 33 H 1.08997 * 109.47486 * 54.99404 * 4 3 2 34 34 H 1.09001 * 109.47502 * 55.25136 * 5 4 3 35 35 H 1.09006 * 109.47372 * 175.24938 * 5 4 3 36 36 H 1.08993 * 109.46746 * 297.67172 * 6 5 4 37 37 H 1.08999 * 109.46956 * 57.67269 * 6 5 4 38 38 H 1.09005 * 109.46797 * 180.02562 * 7 6 5 39 39 H 1.08993 * 109.47333 * 299.99586 * 7 6 5 40 40 H 1.08999 * 109.47237 * 60.00215 * 7 6 5 41 41 H 1.00893 * 111.00118 * 280.61901 * 8 4 3 42 42 H 1.09005 * 109.47058 * 55.00230 * 11 9 8 43 43 H 1.09001 * 109.46693 * 174.99986 * 11 9 8 44 44 H 0.97003 * 120.00098 * 180.02562 * 15 14 12 45 45 H 1.08005 * 120.00078 * 0.02562 * 21 20 9 46 46 H 1.07997 * 119.99865 * 180.23627 * 22 21 20 47 47 H 1.08001 * 119.99445 * 179.83456 * 23 22 21 48 48 H 1.08000 * 119.99515 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.00123 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8794 -0.1263 6 6 3.6693 3.4493 -1.4856 7 6 4.1289 4.9050 -1.5882 8 7 4.0601 0.8570 1.2544 9 6 5.4228 0.3322 1.0936 10 1 5.9774 0.9669 0.4025 11 6 6.1277 0.3190 2.4515 12 6 6.3005 1.7335 2.9417 13 1 5.9436 2.5594 2.3441 14 6 6.9141 1.9733 4.1528 15 7 7.0653 3.2078 4.5803 16 14 7.5319 0.5448 5.1859 17 1 8.9372 0.2382 4.8164 18 1 7.4665 0.9093 6.6239 19 1 6.6833 -0.6483 4.9386 20 6 5.3595 -1.0706 0.5467 21 6 4.3956 -1.9487 1.0058 22 6 4.3351 -3.2343 0.5013 23 6 5.2438 -3.6444 -0.4563 24 6 6.2111 -2.7680 -0.9115 25 6 6.2691 -1.4812 -0.4099 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9331 0.8531 -0.8426 34 1 3.6493 3.4887 0.6682 35 1 5.1668 2.8880 -0.0421 36 1 4.1337 2.8649 -2.2798 37 1 2.5850 3.4026 -1.5865 38 1 3.8359 5.3111 -2.5564 39 1 3.6645 5.4894 -0.7940 40 1 5.2132 4.9517 -1.4872 41 1 4.0173 1.5274 2.0071 42 1 5.5272 -0.2427 3.1671 43 1 7.1053 -0.1519 2.3488 44 1 7.4973 3.3766 5.4322 45 1 3.6875 -1.6292 1.7562 46 1 3.5796 -3.9190 0.8572 47 1 5.1982 -4.6496 -0.8485 48 1 6.9213 -3.0886 -1.6593 49 1 7.0245 -0.7964 -0.7658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358355891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:25 Heat of formation + Delta-G solvation = -27.681026 kcal Electronic energy + Delta-G solvation = -24040.765735 eV Core-core repulsion = 20965.387103 eV Total energy + Delta-G solvation = -3075.378632 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.47488 -38.82256 -36.31671 -34.86128 -34.47665 -32.36771 -31.62817 -30.94068 -29.14904 -27.17362 -26.09717 -23.50664 -23.19493 -22.86020 -22.19434 -21.14916 -20.96442 -19.00495 -17.49777 -16.71475 -16.55150 -16.19730 -16.08021 -15.63914 -15.53382 -15.03296 -14.91125 -14.59740 -14.29115 -14.06745 -13.98436 -13.86176 -13.52468 -13.42913 -13.28590 -13.05820 -12.83378 -12.75896 -12.42710 -12.28834 -12.06094 -11.89985 -11.86251 -11.74863 -11.70173 -11.47525 -11.46502 -11.36447 -11.21654 -11.07578 -10.76677 -9.66226 -9.42294 -9.10807 -8.28845 -6.31139 0.60757 0.67699 1.32876 1.35575 1.46918 2.34779 3.02395 3.06650 3.45028 3.83179 3.99964 4.07979 4.16337 4.19058 4.28926 4.31200 4.38372 4.43105 4.46051 4.53548 4.54870 4.71057 4.75983 4.80755 4.84212 4.87498 4.88908 4.94728 4.99992 5.06428 5.13163 5.15886 5.17421 5.26883 5.30259 5.31704 5.33151 5.36814 5.43027 5.52095 5.57436 5.61123 5.70089 5.73732 5.77501 5.92756 6.24605 6.28155 6.45382 6.65379 6.75033 7.33095 8.86631 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.006748 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.680360 B = 4148.231822 C = 5804.287512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.098 4.098 4 C 0.096 3.904 5 C -0.143 4.143 6 C -0.113 4.113 7 C -0.152 4.152 8 N -0.667 5.667 9 C 0.148 3.852 10 H 0.026 0.974 11 C -0.001 4.001 12 C -0.517 4.517 13 H 0.042 0.958 14 C 0.015 3.985 15 N -0.944 5.944 16 Si 0.939 3.061 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.253 1.253 20 C -0.077 4.077 21 C -0.098 4.098 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.140 4.140 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.033 0.967 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.343 0.657 42 H 0.022 0.978 43 H 0.011 0.989 44 H 0.264 0.736 45 H 0.119 0.881 46 H 0.138 0.862 47 H 0.145 0.855 48 H 0.140 0.860 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 -9.462 -13.307 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.136 4.136 4 C -0.014 4.014 5 C -0.182 4.182 6 C -0.151 4.151 7 C -0.209 4.209 8 N -0.298 5.298 9 C 0.038 3.962 10 H 0.044 0.956 11 C -0.039 4.039 12 C -0.555 4.555 13 H 0.061 0.939 14 C -0.183 4.183 15 N -0.585 5.585 16 Si 0.763 3.237 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.176 1.176 20 C -0.078 4.078 21 C -0.116 4.116 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.158 4.158 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.163 0.837 42 H 0.041 0.959 43 H 0.029 0.971 44 H 0.073 0.927 45 H 0.137 0.863 46 H 0.156 0.844 47 H 0.162 0.838 48 H 0.158 0.842 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.807 -9.969 -13.255 19.268 hybrid contribution 1.394 1.052 0.972 1.999 sum -8.413 -8.917 -12.283 17.354 Atomic orbital electron populations 1.21752 0.95457 1.01606 1.01593 1.21344 0.95472 0.96294 1.01631 1.21565 0.92941 0.97520 1.01584 1.21591 0.95925 0.91900 0.92000 1.22257 0.99584 0.97897 0.98497 1.21493 1.01805 0.96038 0.95766 1.21775 1.00593 0.96496 1.02057 1.60664 1.21423 1.40954 1.06729 1.20091 0.89214 0.91152 0.95705 0.95589 1.19604 0.95187 0.95432 0.93656 1.21275 1.37783 0.92326 1.04091 0.93931 1.25786 0.95820 0.97726 0.98925 1.70043 1.45320 1.21302 1.21847 0.85828 0.79330 0.80677 0.77824 1.19810 1.21061 1.17636 1.20050 0.95885 0.95697 0.96122 1.21041 0.97778 0.93264 0.99534 1.21419 0.99874 0.95794 0.97664 1.21396 0.95340 1.00392 0.97654 1.21301 0.99433 0.93067 1.00555 1.21193 0.99171 0.97509 0.97939 0.92407 0.92545 0.93189 0.93235 0.92185 0.92925 0.90634 0.91758 0.93255 0.94842 0.91997 0.90289 0.91062 0.93226 0.94148 0.83677 0.95944 0.97113 0.92662 0.86343 0.84435 0.83754 0.84246 0.86883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.91 71.98 0.71 -2.22 16 2 C -0.11 -2.67 5.82 30.59 0.18 -2.50 16 3 C -0.10 -2.52 4.76 30.60 0.15 -2.38 16 4 C 0.10 2.94 1.88 44.91 0.08 3.03 16 5 C -0.14 -4.59 4.66 30.59 0.14 -4.45 16 6 C -0.11 -2.82 5.74 30.60 0.18 -2.65 16 7 C -0.15 -3.68 9.91 71.98 0.71 -2.97 16 8 N -0.67 -24.22 4.76 -473.31 -2.25 -26.47 16 9 C 0.15 5.89 1.99 44.17 0.09 5.98 16 10 H 0.03 1.12 6.84 -2.39 -0.02 1.10 16 11 C 0.00 -0.05 3.61 29.85 0.11 0.05 16 12 C -0.52 -28.74 8.67 25.60 0.22 -28.52 16 13 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 14 C 0.01 0.86 5.47 84.65 0.46 1.32 16 15 N -0.94 -58.31 13.96 21.45 0.30 -58.01 16 16 Si 0.94 44.90 27.47 68.60 1.88 46.78 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 20 C -0.08 -2.66 4.62 -19.87 -0.09 -2.75 16 21 C -0.10 -3.09 9.28 22.27 0.21 -2.88 16 22 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 23 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 24 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 25 C -0.14 -4.35 9.67 22.27 0.22 -4.13 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.67 7.27 -2.39 -0.02 1.66 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.67 6.29 -2.39 -0.02 1.66 16 33 H 0.06 2.04 7.66 -2.39 -0.02 2.02 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.03 1.27 7.25 -2.38 -0.02 1.26 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.71 6.35 -2.39 -0.02 1.69 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.34 14.38 6.99 -89.70 -0.63 13.75 16 42 H 0.02 1.07 7.20 -2.38 -0.02 1.06 16 43 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 44 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.12 3.90 7.29 -2.91 -0.02 3.88 16 46 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 47 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 48 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 49 H 0.11 3.45 8.04 -2.91 -0.02 3.43 16 Total: -1.00 -61.91 383.45 4.17 -57.74 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.20 Total: 33.85 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 4.04 Total: -53.89 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.95 Total: -84.48 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -61.91 4.17 -57.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358355891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.060 kcal (2) G-P(sol) polarization free energy of solvation -61.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds