Wall clock time and date at job start Tue Mar 31 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47076 * 2 1 4 4 C 1.53003 * 109.47113 * 184.55422 * 3 2 1 5 5 C 1.53000 * 109.47020 * 173.65625 * 4 3 2 6 6 C 1.53001 * 109.47067 * 185.43935 * 5 4 3 7 7 C 1.52996 * 109.47097 * 182.09550 * 6 5 4 8 8 N 1.46905 * 109.47147 * 293.65231 * 4 3 2 9 9 C 1.46898 * 110.99992 * 97.26594 * 8 4 3 10 10 H 1.09011 * 109.46765 * 316.93158 * 9 8 4 11 11 C 1.52993 * 109.47044 * 196.93199 * 9 8 4 12 12 C 1.50700 * 109.47576 * 65.00100 * 11 9 8 13 13 H 1.08001 * 119.99453 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99993 * 179.72473 * 12 11 9 15 15 N 1.31511 * 120.00241 * 0.27599 * 14 12 11 16 16 Si 1.86799 * 119.99663 * 180.27148 * 14 12 11 17 17 H 1.48504 * 109.47362 * 60.00064 * 16 14 12 18 18 H 1.48503 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47422 * 299.99914 * 16 14 12 20 20 C 1.50701 * 109.47094 * 76.92774 * 9 8 4 21 21 C 1.38228 * 119.99989 * 47.48415 * 20 9 8 22 22 C 1.38234 * 120.00014 * 179.78899 * 21 20 9 23 23 C 1.38237 * 119.99829 * 0.43321 * 22 21 20 24 24 C 1.38232 * 120.00080 * 359.81603 * 23 22 21 25 25 C 1.38233 * 120.00154 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.47287 * 299.99492 * 1 2 3 27 27 H 1.08996 * 109.47215 * 60.00086 * 1 2 3 28 28 H 1.09004 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47072 * 239.99914 * 2 1 3 30 30 H 1.09006 * 109.47191 * 119.99949 * 2 1 3 31 31 H 1.09002 * 109.47041 * 64.55896 * 3 2 1 32 32 H 1.08994 * 109.47181 * 304.55488 * 3 2 1 33 33 H 1.08992 * 109.46907 * 53.65175 * 4 3 2 34 34 H 1.09004 * 109.46529 * 305.43274 * 5 4 3 35 35 H 1.08996 * 109.47837 * 65.43324 * 5 4 3 36 36 H 1.08996 * 109.46891 * 302.09331 * 6 5 4 37 37 H 1.08998 * 109.47099 * 62.09217 * 6 5 4 38 38 H 1.08996 * 109.47071 * 299.99671 * 7 6 5 39 39 H 1.08998 * 109.47417 * 59.99862 * 7 6 5 40 40 H 1.09005 * 109.47298 * 179.97438 * 7 6 5 41 41 H 1.00896 * 110.99607 * 221.21629 * 8 4 3 42 42 H 1.08996 * 109.47228 * 304.99208 * 11 9 8 43 43 H 1.09006 * 109.47254 * 185.00022 * 11 9 8 44 44 H 0.96996 * 119.99981 * 180.02562 * 15 14 12 45 45 H 1.08001 * 119.99848 * 359.97438 * 21 20 9 46 46 H 1.08001 * 120.00279 * 180.27157 * 22 21 20 47 47 H 1.08002 * 119.99645 * 179.83789 * 23 22 21 48 48 H 1.07997 * 119.99926 * 179.97438 * 24 23 22 49 49 H 1.07996 * 120.00031 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5657 1.4440 -0.1145 5 6 4.0637 2.8819 -0.2737 6 6 5.5731 2.8741 -0.5238 7 6 6.0797 4.3138 -0.6309 8 7 4.1484 0.8555 1.0988 9 6 4.4743 -0.5619 0.8921 10 1 3.6583 -1.0480 0.3571 11 6 4.6723 -1.2426 2.2479 12 6 3.3702 -1.2394 3.0066 13 1 2.4896 -0.7959 2.5659 14 6 3.3019 -1.8074 4.2611 15 7 4.3744 -2.3471 4.7979 16 14 1.6861 -1.8102 5.1983 17 1 0.6608 -2.5457 4.4152 18 1 1.8768 -2.4763 6.5118 19 1 1.2357 -0.4115 5.4128 20 6 5.7415 -0.6734 0.0841 21 6 6.8472 0.0829 0.4249 22 6 8.0110 -0.0226 -0.3136 23 6 8.0661 -0.8777 -1.3983 24 6 6.9587 -1.6302 -1.7422 25 6 5.7963 -1.5279 -1.0011 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7448 1.9322 0.9280 32 1 1.6115 1.9793 -0.8463 33 1 3.8654 0.8575 -0.9829 34 1 3.5579 3.3502 -1.1181 35 1 3.8489 3.4436 0.6354 36 1 6.0758 2.3726 0.3032 37 1 5.7847 2.3444 -1.4526 38 1 5.5771 4.8153 -1.4578 39 1 5.8681 4.8435 0.2979 40 1 7.1552 4.3082 -0.8086 41 1 4.9611 1.3735 1.3974 42 1 5.4270 -0.7020 2.8191 43 1 5.0005 -2.2706 2.0939 44 1 4.3262 -2.7470 5.6802 45 1 6.8028 0.7539 1.2700 46 1 8.8764 0.5650 -0.0447 47 1 8.9745 -0.9582 -1.9769 48 1 7.0016 -2.2979 -2.5899 49 1 4.9310 -2.1155 -1.2701 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358355895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:29 Heat of formation + Delta-G solvation = -9.502658 kcal Electronic energy + Delta-G solvation = -24432.727338 eV Core-core repulsion = 21358.136979 eV Total energy + Delta-G solvation = -3074.590359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.47929 -37.49808 -34.53219 -33.92478 -32.43008 -30.94307 -30.59369 -29.07188 -27.55864 -26.17184 -24.31473 -22.51448 -22.16675 -21.80312 -20.48856 -19.93494 -19.46862 -16.94095 -16.13219 -15.72297 -14.92559 -14.75618 -14.60080 -14.47898 -14.12474 -13.86492 -13.45050 -13.16373 -13.01494 -12.73318 -12.68474 -12.34068 -12.14416 -11.96080 -11.85398 -11.71523 -11.28875 -11.11649 -10.99565 -10.96090 -10.80045 -10.67743 -10.58799 -10.43095 -10.30767 -10.10825 -10.04151 -9.88967 -9.45537 -8.84563 -8.57096 -8.24308 -8.18399 -7.59314 -5.86310 -3.84329 1.73112 1.74133 3.41922 3.45928 3.49169 4.14486 4.57849 4.82570 4.90052 5.10180 5.17385 5.21453 5.22151 5.32416 5.45863 5.48823 5.51049 5.55482 5.57142 5.68297 5.78558 5.82011 5.87157 5.88455 5.90709 6.01757 6.11500 6.13658 6.16042 6.23948 6.31182 6.34237 6.37092 6.41617 6.44987 6.50812 6.59304 6.78259 6.79664 6.81017 6.92530 7.00192 7.05448 7.36259 7.60939 7.73093 8.03748 8.11137 8.21603 8.58963 9.21687 9.77044 11.25561 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.006174 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.575365 B = 4533.766789 C = 5577.325246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C -0.100 4.100 4 C 0.085 3.915 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.149 4.149 8 N -0.652 5.652 9 C 0.123 3.877 10 H 0.082 0.918 11 C 0.041 3.959 12 C -0.489 4.489 13 H 0.066 0.934 14 C 0.052 3.948 15 N -0.903 5.903 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.278 1.278 20 C -0.090 4.090 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.122 4.122 25 C -0.119 4.119 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.333 0.667 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.257 0.743 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 8.231 -13.527 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.138 4.138 4 C -0.026 4.026 5 C -0.163 4.163 6 C -0.167 4.167 7 C -0.206 4.206 8 N -0.283 5.283 9 C 0.014 3.986 10 H 0.100 0.900 11 C 0.003 3.997 12 C -0.528 4.528 13 H 0.084 0.916 14 C -0.148 4.148 15 N -0.543 5.543 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.092 4.092 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.155 4.155 24 C -0.140 4.140 25 C -0.137 4.137 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.067 0.933 45 H 0.136 0.864 46 H 0.132 0.868 47 H 0.130 0.870 48 H 0.132 0.868 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.955 8.030 -13.059 15.455 hybrid contribution 0.064 -0.059 0.022 0.090 sum 2.019 7.971 -13.037 15.414 Atomic orbital electron populations 1.21748 0.97015 1.01003 1.00758 1.21769 0.94751 0.97433 1.03328 1.21562 0.94428 0.96915 1.00926 1.21589 0.95033 0.93539 0.92404 1.21877 0.95271 0.97307 1.01881 1.21673 0.96165 0.96806 1.02048 1.21747 1.00493 0.96921 1.01468 1.60729 1.34873 1.02184 1.30490 1.21168 0.90484 0.89119 0.97866 0.89999 1.19090 0.97638 0.94504 0.88440 1.21146 0.95842 1.35252 1.00525 0.91637 1.24986 0.95937 0.96031 0.97815 1.69957 1.28059 1.39719 1.16591 0.86738 0.84547 0.78084 0.79055 1.20497 1.21740 1.20355 1.21246 0.98093 0.94805 0.95026 1.20937 0.92882 0.99892 0.99341 1.21037 0.97680 0.99155 0.95930 1.20977 0.98209 0.98138 0.98182 1.21054 0.93586 0.99569 0.99840 1.21090 0.97985 0.99015 0.95634 0.92963 0.93930 0.93254 0.93495 0.88374 0.91477 0.93503 0.93932 0.92093 0.91304 0.91436 0.92427 0.93183 0.92777 0.93110 0.84672 0.96523 0.96465 0.93308 0.86386 0.86790 0.86959 0.86849 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.15 0.37 -1.75 16 2 C -0.14 -2.17 4.59 -26.73 -0.12 -2.29 16 3 C -0.10 -1.49 4.88 -26.73 -0.13 -1.62 16 4 C 0.08 1.26 2.01 -67.71 -0.14 1.12 16 5 C -0.13 -1.59 4.70 -26.73 -0.13 -1.72 16 6 C -0.13 -1.57 5.55 -26.73 -0.15 -1.71 16 7 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 8 N -0.65 -11.50 5.59 -100.95 -0.56 -12.06 16 9 C 0.12 2.38 1.44 -68.87 -0.10 2.28 16 10 H 0.08 1.62 5.40 -51.92 -0.28 1.34 16 11 C 0.04 1.00 4.54 -27.89 -0.13 0.88 16 12 C -0.49 -13.23 8.82 -34.44 -0.30 -13.53 16 13 H 0.07 1.73 5.53 -52.49 -0.29 1.44 16 14 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 15 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.09 -1.55 4.24 -104.62 -0.44 -1.99 16 21 C -0.11 -1.80 7.36 -39.59 -0.29 -2.09 16 22 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 23 C -0.14 -1.84 10.05 -39.58 -0.40 -2.24 16 24 C -0.12 -1.72 10.05 -39.59 -0.40 -2.11 16 25 C -0.12 -1.89 9.67 -39.58 -0.38 -2.27 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.72 8.00 -51.93 -0.42 0.30 16 30 H 0.10 1.91 4.35 -51.93 -0.23 1.68 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.67 7.27 -51.93 -0.38 0.29 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.88 4.25 -51.93 -0.22 0.66 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.33 5.72 4.90 -39.29 -0.19 5.53 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.12 1.89 6.28 -52.49 -0.33 1.56 16 46 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 47 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 48 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 49 H 0.12 1.76 7.98 -52.49 -0.42 1.34 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -28.88 375.24 -10.71 -39.59 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -8.65 Total: 7.23 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: -2.86 Total: -30.94 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.17 Total: -38.38 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.88 -10.71 -39.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358355895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.087 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds