Wall clock time and date at job start Tue Mar 31 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47076 * 2 1 4 4 C 1.53003 * 109.47113 * 184.55422 * 3 2 1 5 5 C 1.53000 * 109.47020 * 173.65625 * 4 3 2 6 6 C 1.53001 * 109.47067 * 185.43935 * 5 4 3 7 7 C 1.52996 * 109.47097 * 182.09550 * 6 5 4 8 8 N 1.46905 * 109.47147 * 293.65231 * 4 3 2 9 9 C 1.46898 * 110.99992 * 97.26594 * 8 4 3 10 10 H 1.09011 * 109.46765 * 316.93158 * 9 8 4 11 11 C 1.52993 * 109.47044 * 196.93199 * 9 8 4 12 12 C 1.50700 * 109.47576 * 65.00100 * 11 9 8 13 13 H 1.08001 * 119.99453 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99993 * 179.72473 * 12 11 9 15 15 N 1.31511 * 120.00241 * 0.27599 * 14 12 11 16 16 Si 1.86799 * 119.99663 * 180.27148 * 14 12 11 17 17 H 1.48504 * 109.47362 * 60.00064 * 16 14 12 18 18 H 1.48503 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47422 * 299.99914 * 16 14 12 20 20 C 1.50701 * 109.47094 * 76.92774 * 9 8 4 21 21 C 1.38228 * 119.99989 * 47.48415 * 20 9 8 22 22 C 1.38234 * 120.00014 * 179.78899 * 21 20 9 23 23 C 1.38237 * 119.99829 * 0.43321 * 22 21 20 24 24 C 1.38232 * 120.00080 * 359.81603 * 23 22 21 25 25 C 1.38233 * 120.00154 * 359.97438 * 24 23 22 26 26 H 1.09007 * 109.47287 * 299.99492 * 1 2 3 27 27 H 1.08996 * 109.47215 * 60.00086 * 1 2 3 28 28 H 1.09004 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47072 * 239.99914 * 2 1 3 30 30 H 1.09006 * 109.47191 * 119.99949 * 2 1 3 31 31 H 1.09002 * 109.47041 * 64.55896 * 3 2 1 32 32 H 1.08994 * 109.47181 * 304.55488 * 3 2 1 33 33 H 1.08992 * 109.46907 * 53.65175 * 4 3 2 34 34 H 1.09004 * 109.46529 * 305.43274 * 5 4 3 35 35 H 1.08996 * 109.47837 * 65.43324 * 5 4 3 36 36 H 1.08996 * 109.46891 * 302.09331 * 6 5 4 37 37 H 1.08998 * 109.47099 * 62.09217 * 6 5 4 38 38 H 1.08996 * 109.47071 * 299.99671 * 7 6 5 39 39 H 1.08998 * 109.47417 * 59.99862 * 7 6 5 40 40 H 1.09005 * 109.47298 * 179.97438 * 7 6 5 41 41 H 1.00896 * 110.99607 * 221.21629 * 8 4 3 42 42 H 1.08996 * 109.47228 * 304.99208 * 11 9 8 43 43 H 1.09006 * 109.47254 * 185.00022 * 11 9 8 44 44 H 0.96996 * 119.99981 * 180.02562 * 15 14 12 45 45 H 1.08001 * 119.99848 * 359.97438 * 21 20 9 46 46 H 1.08001 * 120.00279 * 180.27157 * 22 21 20 47 47 H 1.08002 * 119.99645 * 179.83789 * 23 22 21 48 48 H 1.07997 * 119.99926 * 179.97438 * 24 23 22 49 49 H 1.07996 * 120.00031 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5657 1.4440 -0.1145 5 6 4.0637 2.8819 -0.2737 6 6 5.5731 2.8741 -0.5238 7 6 6.0797 4.3138 -0.6309 8 7 4.1484 0.8555 1.0988 9 6 4.4743 -0.5619 0.8921 10 1 3.6583 -1.0480 0.3571 11 6 4.6723 -1.2426 2.2479 12 6 3.3702 -1.2394 3.0066 13 1 2.4896 -0.7959 2.5659 14 6 3.3019 -1.8074 4.2611 15 7 4.3744 -2.3471 4.7979 16 14 1.6861 -1.8102 5.1983 17 1 0.6608 -2.5457 4.4152 18 1 1.8768 -2.4763 6.5118 19 1 1.2357 -0.4115 5.4128 20 6 5.7415 -0.6734 0.0841 21 6 6.8472 0.0829 0.4249 22 6 8.0110 -0.0226 -0.3136 23 6 8.0661 -0.8777 -1.3983 24 6 6.9587 -1.6302 -1.7422 25 6 5.7963 -1.5279 -1.0011 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7448 1.9322 0.9280 32 1 1.6115 1.9793 -0.8463 33 1 3.8654 0.8575 -0.9829 34 1 3.5579 3.3502 -1.1181 35 1 3.8489 3.4436 0.6354 36 1 6.0758 2.3726 0.3032 37 1 5.7847 2.3444 -1.4526 38 1 5.5771 4.8153 -1.4578 39 1 5.8681 4.8435 0.2979 40 1 7.1552 4.3082 -0.8086 41 1 4.9611 1.3735 1.3974 42 1 5.4270 -0.7020 2.8191 43 1 5.0005 -2.2706 2.0939 44 1 4.3262 -2.7470 5.6802 45 1 6.8028 0.7539 1.2700 46 1 8.8764 0.5650 -0.0447 47 1 8.9745 -0.9582 -1.9769 48 1 7.0016 -2.2979 -2.5899 49 1 4.9310 -2.1155 -1.2701 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358355895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:29 Heat of formation + Delta-G solvation = -23.141451 kcal Electronic energy + Delta-G solvation = -24433.318761 eV Core-core repulsion = 21358.136979 eV Total energy + Delta-G solvation = -3075.181782 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75526 -38.69204 -35.98802 -35.11186 -34.35143 -32.16966 -31.75866 -30.56531 -29.12842 -27.23422 -26.07600 -23.83387 -23.42709 -23.12499 -21.61013 -21.15661 -20.93787 -18.57710 -17.70953 -17.05802 -16.55666 -16.15869 -15.84436 -15.67861 -15.45975 -15.02858 -14.74622 -14.43770 -14.16696 -14.12905 -14.06826 -13.71792 -13.64887 -13.41752 -12.93820 -12.81143 -12.77889 -12.69848 -12.40428 -12.31787 -12.21611 -12.12234 -12.01545 -11.83696 -11.62997 -11.48141 -11.38957 -11.22987 -11.03195 -10.73888 -10.45193 -9.73802 -9.49677 -8.97878 -8.06229 -6.10308 0.54607 0.56161 1.42220 1.44667 1.51653 2.48878 2.95967 3.26404 3.51323 3.81681 4.00081 4.04167 4.13919 4.17307 4.22058 4.30637 4.32628 4.41891 4.43941 4.58710 4.61295 4.70471 4.73799 4.78811 4.84655 4.91837 4.94368 5.02518 5.04505 5.08393 5.16276 5.19550 5.20019 5.22353 5.32241 5.36640 5.41182 5.48533 5.51235 5.57506 5.62899 5.64495 5.67334 5.72870 5.83449 5.98385 6.19547 6.39164 6.57967 6.77714 7.05087 7.55146 9.05904 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011428 B = 0.006174 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.575365 B = 4533.766789 C = 5577.325246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C -0.096 4.096 4 C 0.089 3.911 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.145 4.145 8 N -0.664 5.664 9 C 0.143 3.857 10 H 0.074 0.926 11 C 0.051 3.949 12 C -0.492 4.492 13 H 0.070 0.930 14 C -0.005 4.005 15 N -0.942 5.942 16 Si 0.951 3.049 17 H -0.270 1.270 18 H -0.291 1.291 19 H -0.271 1.271 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.134 4.134 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.333 0.667 42 H -0.012 1.012 43 H -0.018 1.018 44 H 0.256 0.744 45 H 0.109 0.891 46 H 0.139 0.861 47 H 0.147 0.853 48 H 0.142 0.858 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 9.518 -15.667 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C -0.134 4.134 4 C -0.021 4.021 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.202 4.202 8 N -0.295 5.295 9 C 0.033 3.967 10 H 0.092 0.908 11 C 0.014 3.986 12 C -0.530 4.530 13 H 0.088 0.912 14 C -0.201 4.201 15 N -0.584 5.584 16 Si 0.777 3.223 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.197 1.197 20 C -0.114 4.114 21 C -0.141 4.141 22 C -0.139 4.139 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.153 4.153 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.153 0.847 42 H 0.006 0.994 43 H 0.000 1.000 44 H 0.065 0.935 45 H 0.127 0.873 46 H 0.156 0.844 47 H 0.164 0.836 48 H 0.160 0.840 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.876 9.329 -15.215 17.946 hybrid contribution 0.147 -0.474 0.629 0.802 sum 2.023 8.855 -14.586 17.183 Atomic orbital electron populations 1.21721 0.95535 1.01287 1.01657 1.21684 0.96097 0.97816 1.01532 1.21550 0.94357 0.96237 1.01298 1.21594 0.94943 0.94726 0.90800 1.21823 0.95872 0.95508 1.02414 1.21601 0.95599 0.97889 1.01135 1.21711 1.00984 0.95559 1.01956 1.60626 1.35028 1.01418 1.32457 1.20619 0.91670 0.89671 0.94735 0.90840 1.18871 0.95762 0.92670 0.91295 1.21538 0.96790 1.34093 1.00600 0.91160 1.25826 0.99221 0.95993 0.99059 1.70104 1.30261 1.41118 1.16950 0.85711 0.80623 0.78318 0.77618 1.19476 1.21646 1.19668 1.21031 0.97545 0.96731 0.96081 1.20945 0.93533 0.99952 0.99635 1.21344 0.97517 0.99351 0.95700 1.21403 0.99140 0.96670 0.97629 1.21386 0.92777 0.99674 1.00087 1.21229 0.99213 0.98964 0.95869 0.93465 0.91565 0.93339 0.93119 0.92286 0.92809 0.90879 0.94447 0.90232 0.91708 0.92782 0.92982 0.92094 0.92724 0.92457 0.84653 0.99411 1.00019 0.93485 0.87336 0.84364 0.83569 0.84024 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.91 71.98 0.71 -3.25 16 2 C -0.13 -4.26 4.59 30.59 0.14 -4.12 16 3 C -0.10 -2.78 4.88 30.60 0.15 -2.63 16 4 C 0.09 2.62 2.01 44.92 0.09 2.71 16 5 C -0.12 -2.84 4.70 30.59 0.14 -2.70 16 6 C -0.12 -2.86 5.55 30.59 0.17 -2.70 16 7 C -0.14 -2.70 9.91 71.98 0.71 -1.99 16 8 N -0.66 -24.20 5.59 -473.30 -2.64 -26.84 16 9 C 0.14 5.81 1.44 44.17 0.06 5.87 16 10 H 0.07 3.06 5.40 -2.38 -0.01 3.05 16 11 C 0.05 2.71 4.54 29.85 0.14 2.84 16 12 C -0.49 -27.70 8.82 25.60 0.23 -27.47 16 13 H 0.07 3.84 5.53 -2.91 -0.02 3.82 16 14 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 15 N -0.94 -58.65 13.29 21.45 0.28 -58.36 16 16 Si 0.95 45.87 29.54 68.60 2.03 47.89 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 C -0.11 -3.97 4.24 -19.87 -0.08 -4.05 16 21 C -0.12 -3.96 7.36 22.27 0.16 -3.80 16 22 C -0.12 -3.22 10.05 22.27 0.22 -2.99 16 23 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 24 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 25 C -0.13 -4.26 9.67 22.27 0.22 -4.05 16 26 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.54 8.00 -2.39 -0.02 1.52 16 30 H 0.06 2.36 4.35 -2.38 -0.01 2.35 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.16 7.27 -2.39 -0.02 1.14 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.40 4.25 -2.39 -0.01 1.39 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.33 11.92 4.90 -89.70 -0.44 11.48 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 44 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.11 3.63 6.28 -2.91 -0.02 3.61 16 46 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 47 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 48 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 49 H 0.12 3.58 7.98 -2.91 -0.02 3.55 16 Total: -1.00 -64.76 375.24 4.10 -60.66 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.46 Total: 30.66 kcal Atomic # 6 Polarization: -57.98 SS G_CDS: 3.97 Total: -54.00 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.36 Total: -85.21 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -64.76 4.10 -60.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358355895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.514 kcal (2) G-P(sol) polarization free energy of solvation -64.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds