Wall clock time and date at job start Tue Mar 31 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 C 1.53001 * 109.47479 * 240.00242 * 2 1 3 5 5 C 1.53002 * 109.47105 * 119.99635 * 2 1 3 6 6 C 1.53004 * 109.46858 * 68.76116 * 5 2 1 7 7 C 1.53000 * 109.47064 * 303.93249 * 6 5 2 8 8 C 1.53001 * 109.46899 * 183.93339 * 6 5 2 9 9 N 1.46896 * 109.47459 * 63.93302 * 6 5 2 10 10 C 1.46897 * 111.00244 * 180.02562 * 9 6 5 11 11 C 1.50708 * 109.47012 * 179.97438 * 10 9 6 12 12 C 1.38635 * 119.74830 * 269.72658 * 11 10 9 13 13 C 1.37620 * 120.24337 * 179.72083 * 12 11 10 14 14 C 1.40715 * 119.74572 * 0.57756 * 13 12 11 15 15 C 1.41398 * 120.24212 * 179.68345 * 14 13 12 16 16 H 1.07998 * 119.99308 * 206.50615 * 15 14 13 17 17 C 1.39943 * 120.00032 * 26.50284 * 15 14 13 18 18 N 1.30825 * 120.00231 * 12.91629 * 17 15 14 19 19 Si 1.86802 * 119.99786 * 192.91338 * 17 15 14 20 20 H 1.48507 * 109.46981 * 60.00533 * 19 17 15 21 21 H 1.48495 * 109.46981 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47457 * 300.00594 * 19 17 15 23 23 C 1.40714 * 119.50996 * 359.69492 * 14 13 12 24 24 C 1.37611 * 119.74970 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.47096 * 274.03460 * 1 2 3 26 26 H 1.08997 * 109.47121 * 34.04002 * 1 2 3 27 27 H 1.09001 * 109.46685 * 154.03760 * 1 2 3 28 28 H 1.09000 * 109.46806 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47560 * 299.99703 * 3 2 1 30 30 H 1.09000 * 109.46885 * 60.00442 * 3 2 1 31 31 H 1.09000 * 109.46461 * 313.38824 * 4 2 1 32 32 H 1.08993 * 109.46873 * 73.38696 * 4 2 1 33 33 H 1.08995 * 109.47251 * 193.39692 * 4 2 1 34 34 H 1.08997 * 109.47519 * 308.75761 * 5 2 1 35 35 H 1.08998 * 109.46859 * 188.75689 * 5 2 1 36 36 H 1.08993 * 109.47599 * 206.36670 * 7 6 5 37 37 H 1.08997 * 109.47399 * 326.37261 * 7 6 5 38 38 H 1.09003 * 109.46770 * 86.36695 * 7 6 5 39 39 H 1.08993 * 109.47291 * 298.57828 * 8 6 5 40 40 H 1.09004 * 109.47128 * 58.58326 * 8 6 5 41 41 H 1.09007 * 109.46731 * 178.57486 * 8 6 5 42 42 H 1.00899 * 111.00014 * 56.04333 * 9 6 5 43 43 H 1.08999 * 109.47082 * 299.99845 * 10 9 6 44 44 H 1.08997 * 109.46785 * 60.00283 * 10 9 6 45 45 H 1.07997 * 119.87454 * 359.97438 * 12 11 10 46 46 H 1.08005 * 120.12227 * 180.27509 * 13 12 11 47 47 H 0.96994 * 119.99531 * 179.97438 * 18 17 15 48 48 H 1.08006 * 120.12143 * 179.97438 * 23 14 13 49 49 H 1.08000 * 119.88288 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.7173 -2.2131 1.1443 7 6 0.2132 -2.3958 0.9313 8 6 2.1389 -2.9181 2.4351 9 7 2.4467 -2.7932 0.0089 10 6 2.1601 -4.2279 -0.1234 11 6 2.9238 -4.7867 -1.2963 12 6 2.3424 -4.7948 -2.5549 13 6 3.0327 -5.2974 -3.6341 14 6 4.3286 -5.8153 -3.4542 15 6 5.0448 -6.3404 -4.5546 16 1 5.8021 -7.0939 -4.3959 17 6 4.7723 -5.8837 -5.8490 18 7 4.0496 -4.8074 -6.0244 19 14 5.4405 -6.8110 -7.3265 20 1 4.9152 -8.2001 -7.3181 21 1 5.0131 -6.1283 -8.5741 22 1 6.9237 -6.8424 -7.2619 23 6 4.9065 -5.8071 -2.1712 24 6 4.2000 -5.2943 -1.1074 25 1 -0.3633 0.0723 1.0251 26 1 -0.3633 0.8515 -0.5752 27 1 -0.3633 -0.9240 -0.4499 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.4956 -1.6569 -1.3763 32 1 1.8842 -0.0886 -2.1230 33 1 3.1037 -0.9320 -1.1382 34 1 1.5546 -0.3057 2.1324 35 1 3.1187 -0.5877 1.3309 36 1 -0.0917 -3.3710 1.3108 37 1 -0.3269 -1.6133 1.4642 38 1 -0.0131 -2.3332 -0.1332 39 1 3.2145 -2.8094 2.5739 40 1 1.6164 -2.4708 3.2808 41 1 1.8859 -3.9764 2.3704 42 1 3.4385 -2.6287 0.0942 43 1 2.4632 -4.7444 0.7873 44 1 1.0916 -4.3715 -0.2843 45 1 1.3456 -4.4015 -2.6895 46 1 2.5796 -5.2986 -4.6145 47 1 3.8611 -4.4908 -6.9216 48 1 5.9004 -6.2025 -2.0218 49 1 4.6415 -5.2865 -0.1219 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398978588.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:22 Heat of formation + Delta-G solvation = 16.195860 kcal Electronic energy + Delta-G solvation = -23981.038049 eV Core-core repulsion = 20907.562061 eV Total energy + Delta-G solvation = -3073.475988 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.66587 -37.53963 -35.45772 -33.71292 -31.60319 -29.47400 -29.10041 -28.56533 -27.19992 -26.35911 -25.90573 -25.71796 -23.05266 -20.91265 -19.90738 -19.09254 -18.59367 -17.24309 -15.61260 -15.33811 -15.15603 -14.97276 -14.23508 -14.03297 -13.78524 -13.64888 -13.34761 -13.05958 -12.85475 -12.62886 -12.35028 -12.14294 -11.98986 -11.88320 -11.74119 -11.54570 -11.47286 -11.30263 -11.03040 -11.01399 -10.88939 -10.86486 -10.48425 -10.34613 -10.29671 -10.25227 -10.20211 -9.89437 -9.53576 -9.29722 -9.11856 -7.68067 -7.38887 -7.19142 -6.66811 -4.31667 2.80445 3.08762 3.11740 3.12584 3.22231 3.96909 4.49768 4.73889 4.84960 4.94308 5.10995 5.15533 5.26520 5.47641 5.62220 5.65231 5.72468 5.75504 5.79646 5.84265 5.89119 5.91574 5.96823 6.00646 6.02834 6.03710 6.13518 6.18942 6.28355 6.36752 6.38807 6.41540 6.46614 6.52087 6.55463 6.66184 6.78059 7.00365 7.12577 7.26252 7.35464 7.42401 7.56023 7.66954 7.81439 7.96785 8.11003 8.20706 8.36098 8.70513 8.95254 9.03218 10.26348 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.003745 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.894889 B = 7474.912882 C = 8152.533160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.062 4.062 3 C -0.141 4.141 4 C -0.124 4.124 5 C -0.093 4.093 6 C 0.108 3.892 7 C -0.149 4.149 8 C -0.180 4.180 9 N -0.659 5.659 10 C 0.116 3.884 11 C -0.205 4.205 12 C -0.082 4.082 13 C -0.162 4.162 14 C 0.111 3.889 15 C -0.465 4.465 16 H 0.074 0.926 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.908 3.092 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.225 4.225 24 C -0.089 4.089 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.337 0.663 43 H 0.019 0.981 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.119 0.881 47 H 0.279 0.721 48 H 0.088 0.912 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 7.654 11.040 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.062 4.062 3 C -0.198 4.198 4 C -0.181 4.181 5 C -0.131 4.131 6 C 0.016 3.984 7 C -0.206 4.206 8 C -0.239 4.239 9 N -0.290 5.290 10 C -0.011 4.011 11 C -0.207 4.207 12 C -0.101 4.101 13 C -0.182 4.182 14 C 0.108 3.892 15 C -0.495 4.495 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.424 5.424 19 Si 0.733 3.267 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.245 4.245 24 C -0.108 4.108 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.156 0.844 43 H 0.037 0.963 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.137 0.863 47 H 0.090 0.910 48 H 0.107 0.893 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.563 8.004 10.389 14.665 hybrid contribution 1.008 -0.616 0.117 1.187 sum -5.555 7.388 10.506 13.993 Atomic orbital electron populations 1.22542 0.95527 1.02223 1.00726 1.20447 0.95025 0.94258 0.96443 1.21930 1.00779 0.96264 1.00817 1.22082 1.02178 1.00360 0.93529 1.21747 1.00498 0.93777 0.97090 1.20923 0.94858 0.93776 0.88817 1.22494 0.94558 1.00605 1.02904 1.22586 1.01109 1.01357 0.98883 1.61573 1.13075 1.14195 1.40195 1.20657 0.98842 0.86702 0.94931 1.18952 0.96627 1.11017 0.94062 1.20495 0.97832 0.99168 0.92566 1.21381 0.94824 1.04174 0.97806 1.17613 0.91066 0.88945 0.91555 1.19553 1.18582 1.20585 0.90788 0.90757 1.25873 0.93867 0.93898 1.00581 1.69800 1.30481 1.17847 1.24260 0.86372 0.80032 0.80533 0.79763 1.18951 1.20370 1.19118 1.20951 0.99115 1.10318 0.94077 1.20344 0.94312 0.99682 0.96456 0.93263 0.93968 0.90740 0.93038 0.93005 0.93617 0.89001 0.95716 0.92885 0.92381 0.92422 0.93879 0.92006 0.90338 0.93038 0.92847 0.92267 0.84394 0.96294 0.91946 0.89590 0.86315 0.90971 0.89343 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 7.20 37.16 0.27 -1.40 16 2 C -0.06 -0.72 0.77 -154.51 -0.12 -0.84 16 3 C -0.14 -1.53 8.28 37.16 0.31 -1.23 16 4 C -0.12 -1.80 6.92 37.16 0.26 -1.54 16 5 C -0.09 -1.05 3.65 -26.73 -0.10 -1.15 16 6 C 0.11 1.29 0.56 -131.60 -0.07 1.22 16 7 C -0.15 -1.72 5.84 37.16 0.22 -1.50 16 8 C -0.18 -2.06 8.06 37.16 0.30 -1.76 16 9 N -0.66 -9.66 2.10 -101.22 -0.21 -9.87 16 10 C 0.12 1.94 5.11 -4.97 -0.03 1.91 16 11 C -0.20 -4.29 5.42 -104.32 -0.56 -4.85 16 12 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 13 C -0.16 -4.21 8.68 -38.87 -0.34 -4.55 16 14 C 0.11 2.96 5.57 -106.82 -0.59 2.36 16 15 C -0.47 -12.46 9.07 -37.74 -0.34 -12.81 16 16 H 0.07 1.92 7.88 -52.49 -0.41 1.50 16 17 C 0.07 1.89 5.23 -17.34 -0.09 1.80 16 18 N -0.80 -20.86 10.81 55.55 0.60 -20.26 16 19 Si 0.91 18.90 29.58 -169.99 -5.03 13.88 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.22 -5.52 9.80 -38.88 -0.38 -5.90 16 24 C -0.09 -1.95 9.67 -39.66 -0.38 -2.34 16 25 H 0.05 0.48 6.40 -51.93 -0.33 0.15 16 26 H 0.04 0.45 7.88 -51.93 -0.41 0.04 16 27 H 0.07 0.85 4.60 -51.93 -0.24 0.61 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 1.47 4.97 -51.93 -0.26 1.21 16 32 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 33 H 0.05 0.83 7.10 -51.93 -0.37 0.46 16 34 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 35 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.04 0.50 7.61 -51.93 -0.40 0.10 16 37 H 0.06 0.63 5.61 -51.93 -0.29 0.34 16 38 H 0.08 1.00 4.85 -51.93 -0.25 0.75 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.72 6.43 -51.92 -0.33 0.39 16 42 H 0.34 5.22 8.26 -39.29 -0.32 4.89 16 43 H 0.02 0.31 6.28 -51.93 -0.33 -0.02 16 44 H 0.06 1.03 6.86 -51.93 -0.36 0.67 16 45 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 46 H 0.12 3.21 6.13 -52.48 -0.32 2.89 16 47 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 48 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 49 H 0.08 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -25.88 361.38 -9.63 -35.51 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -8.39 Total: 10.14 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: -2.04 Total: -34.84 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.39 Total: -30.13 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -25.88 -9.63 -35.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398978588.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.704 kcal (2) G-P(sol) polarization free energy of solvation -25.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds