Wall clock time and date at job start Tue Mar 31 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 C 1.53001 * 109.47479 * 240.00242 * 2 1 3 5 5 C 1.53002 * 109.47105 * 119.99635 * 2 1 3 6 6 C 1.53004 * 109.46858 * 68.76116 * 5 2 1 7 7 C 1.53000 * 109.47064 * 303.93249 * 6 5 2 8 8 C 1.53001 * 109.46899 * 183.93339 * 6 5 2 9 9 N 1.46896 * 109.47459 * 63.93302 * 6 5 2 10 10 C 1.46897 * 111.00244 * 180.02562 * 9 6 5 11 11 C 1.50708 * 109.47012 * 179.97438 * 10 9 6 12 12 C 1.38635 * 119.74830 * 269.72658 * 11 10 9 13 13 C 1.37620 * 120.24337 * 179.72083 * 12 11 10 14 14 C 1.40715 * 119.74572 * 0.57756 * 13 12 11 15 15 C 1.41398 * 120.24212 * 179.68345 * 14 13 12 16 16 H 1.07998 * 119.99308 * 206.50615 * 15 14 13 17 17 C 1.39943 * 120.00032 * 26.50284 * 15 14 13 18 18 N 1.30825 * 120.00231 * 12.91629 * 17 15 14 19 19 Si 1.86802 * 119.99786 * 192.91338 * 17 15 14 20 20 H 1.48507 * 109.46981 * 60.00533 * 19 17 15 21 21 H 1.48495 * 109.46981 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47457 * 300.00594 * 19 17 15 23 23 C 1.40714 * 119.50996 * 359.69492 * 14 13 12 24 24 C 1.37611 * 119.74970 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.47096 * 274.03460 * 1 2 3 26 26 H 1.08997 * 109.47121 * 34.04002 * 1 2 3 27 27 H 1.09001 * 109.46685 * 154.03760 * 1 2 3 28 28 H 1.09000 * 109.46806 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47560 * 299.99703 * 3 2 1 30 30 H 1.09000 * 109.46885 * 60.00442 * 3 2 1 31 31 H 1.09000 * 109.46461 * 313.38824 * 4 2 1 32 32 H 1.08993 * 109.46873 * 73.38696 * 4 2 1 33 33 H 1.08995 * 109.47251 * 193.39692 * 4 2 1 34 34 H 1.08997 * 109.47519 * 308.75761 * 5 2 1 35 35 H 1.08998 * 109.46859 * 188.75689 * 5 2 1 36 36 H 1.08993 * 109.47599 * 206.36670 * 7 6 5 37 37 H 1.08997 * 109.47399 * 326.37261 * 7 6 5 38 38 H 1.09003 * 109.46770 * 86.36695 * 7 6 5 39 39 H 1.08993 * 109.47291 * 298.57828 * 8 6 5 40 40 H 1.09004 * 109.47128 * 58.58326 * 8 6 5 41 41 H 1.09007 * 109.46731 * 178.57486 * 8 6 5 42 42 H 1.00899 * 111.00014 * 56.04333 * 9 6 5 43 43 H 1.08999 * 109.47082 * 299.99845 * 10 9 6 44 44 H 1.08997 * 109.46785 * 60.00283 * 10 9 6 45 45 H 1.07997 * 119.87454 * 359.97438 * 12 11 10 46 46 H 1.08005 * 120.12227 * 180.27509 * 13 12 11 47 47 H 0.96994 * 119.99531 * 179.97438 * 18 17 15 48 48 H 1.08006 * 120.12143 * 179.97438 * 23 14 13 49 49 H 1.08000 * 119.88288 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.7173 -2.2131 1.1443 7 6 0.2132 -2.3958 0.9313 8 6 2.1389 -2.9181 2.4351 9 7 2.4467 -2.7932 0.0089 10 6 2.1601 -4.2279 -0.1234 11 6 2.9238 -4.7867 -1.2963 12 6 2.3424 -4.7948 -2.5549 13 6 3.0327 -5.2974 -3.6341 14 6 4.3286 -5.8153 -3.4542 15 6 5.0448 -6.3404 -4.5546 16 1 5.8021 -7.0939 -4.3959 17 6 4.7723 -5.8837 -5.8490 18 7 4.0496 -4.8074 -6.0244 19 14 5.4405 -6.8110 -7.3265 20 1 4.9152 -8.2001 -7.3181 21 1 5.0131 -6.1283 -8.5741 22 1 6.9237 -6.8424 -7.2619 23 6 4.9065 -5.8071 -2.1712 24 6 4.2000 -5.2943 -1.1074 25 1 -0.3633 0.0723 1.0251 26 1 -0.3633 0.8515 -0.5752 27 1 -0.3633 -0.9240 -0.4499 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.4956 -1.6569 -1.3763 32 1 1.8842 -0.0886 -2.1230 33 1 3.1037 -0.9320 -1.1382 34 1 1.5546 -0.3057 2.1324 35 1 3.1187 -0.5877 1.3309 36 1 -0.0917 -3.3710 1.3108 37 1 -0.3269 -1.6133 1.4642 38 1 -0.0131 -2.3332 -0.1332 39 1 3.2145 -2.8094 2.5739 40 1 1.6164 -2.4708 3.2808 41 1 1.8859 -3.9764 2.3704 42 1 3.4385 -2.6287 0.0942 43 1 2.4632 -4.7444 0.7873 44 1 1.0916 -4.3715 -0.2843 45 1 1.3456 -4.4015 -2.6895 46 1 2.5796 -5.2986 -4.6145 47 1 3.8611 -4.4908 -6.9216 48 1 5.9004 -6.2025 -2.0218 49 1 4.6415 -5.2865 -0.1219 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398978588.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:21 Heat of formation + Delta-G solvation = 6.196438 kcal Electronic energy + Delta-G solvation = -23981.471657 eV Core-core repulsion = 20907.562061 eV Total energy + Delta-G solvation = -3073.909595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.72069 -39.31006 -36.66472 -35.45698 -33.06021 -31.20440 -30.78028 -29.53871 -28.33604 -27.42083 -27.28256 -26.75826 -24.64880 -22.79924 -21.63845 -20.12830 -19.59054 -19.17709 -17.17452 -16.74621 -16.38261 -16.07768 -15.67522 -15.46892 -15.14622 -14.96268 -14.68583 -14.32089 -13.99949 -13.93516 -13.75228 -13.58257 -13.41837 -13.10156 -12.95105 -12.80972 -12.67794 -12.63982 -12.53696 -12.42473 -12.15399 -12.07544 -11.95659 -11.82338 -11.39793 -11.35831 -11.25374 -11.16915 -11.15272 -11.01121 -10.79404 -9.29133 -9.18081 -8.75844 -8.55456 -6.31164 1.00819 1.20019 1.37802 1.49320 1.53608 2.22364 2.75808 3.47365 3.80950 3.90578 4.01140 4.14540 4.23235 4.31900 4.39894 4.44054 4.56150 4.61276 4.70743 4.76421 4.79024 4.87031 4.89226 4.92156 4.95019 5.01866 5.09341 5.11019 5.12403 5.14292 5.18977 5.24347 5.29563 5.31423 5.39198 5.46119 5.52025 5.52501 5.56220 5.64263 5.75585 5.76588 6.01112 6.05159 6.15196 6.29398 6.42899 6.45495 6.67297 6.76739 6.99195 7.09496 8.39328 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.003745 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.894889 B = 7474.912882 C = 8152.533160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.118 4.118 5 C -0.089 4.089 6 C 0.109 3.891 7 C -0.147 4.147 8 C -0.176 4.176 9 N -0.664 5.664 10 C 0.127 3.873 11 C -0.187 4.187 12 C -0.087 4.087 13 C -0.186 4.186 14 C 0.076 3.924 15 C -0.506 4.506 16 H 0.071 0.929 17 C 0.033 3.967 18 N -0.832 5.832 19 Si 0.981 3.019 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.241 4.241 24 C -0.089 4.089 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.013 0.987 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.333 0.667 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.285 0.715 48 H 0.091 0.909 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 8.478 13.010 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.059 4.059 3 C -0.196 4.196 4 C -0.175 4.175 5 C -0.127 4.127 6 C 0.018 3.982 7 C -0.204 4.204 8 C -0.235 4.235 9 N -0.295 5.295 10 C -0.001 4.001 11 C -0.188 4.188 12 C -0.105 4.105 13 C -0.206 4.206 14 C 0.074 3.926 15 C -0.536 4.536 16 H 0.089 0.911 17 C -0.180 4.180 18 N -0.459 5.459 19 Si 0.802 3.198 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.185 1.185 23 C -0.260 4.260 24 C -0.108 4.108 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.151 0.849 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.096 0.904 48 H 0.110 0.890 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.273 8.835 12.381 16.859 hybrid contribution 1.162 -0.793 -0.343 1.448 sum -6.111 8.042 12.037 15.713 Atomic orbital electron populations 1.22509 0.94584 1.01957 1.01753 1.20406 0.95744 0.94500 0.95228 1.21903 1.00498 0.95705 1.01511 1.21995 1.00915 0.99791 0.94830 1.21729 1.00519 0.93014 0.97424 1.20999 0.94805 0.94208 0.88161 1.22488 0.94212 1.01355 1.02320 1.22529 1.01253 1.00875 0.98878 1.61497 1.13031 1.12669 1.42268 1.20515 0.98338 0.87965 0.93302 1.19401 0.96241 1.08497 0.94704 1.20710 0.98386 0.98664 0.92789 1.21328 0.95250 1.06045 0.97927 1.17943 0.91721 0.90184 0.92714 1.19805 1.19784 1.21804 0.92204 0.91072 1.26711 0.93903 0.94376 1.03056 1.69873 1.31697 1.19105 1.25196 0.85269 0.79410 0.79049 0.76042 1.18530 1.19219 1.18518 1.21157 0.99684 1.10935 0.94254 1.20663 0.94493 0.98536 0.97103 0.91549 0.93863 0.91452 0.93514 0.93327 0.91926 0.90518 0.96819 0.94538 0.90344 0.92771 0.93846 0.90180 0.91660 0.93163 0.91080 0.92938 0.84878 0.95007 0.91421 0.88192 0.88359 0.90440 0.89028 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 7.20 71.98 0.52 -2.40 16 2 C -0.06 -1.26 0.77 -52.18 -0.04 -1.30 16 3 C -0.14 -2.75 8.28 71.98 0.60 -2.15 16 4 C -0.12 -3.37 6.92 71.98 0.50 -2.87 16 5 C -0.09 -1.75 3.65 30.60 0.11 -1.64 16 6 C 0.11 2.33 0.56 3.53 0.00 2.33 16 7 C -0.15 -2.99 5.84 71.98 0.42 -2.56 16 8 C -0.18 -3.44 8.06 71.98 0.58 -2.86 16 9 N -0.66 -18.34 2.10 -474.14 -0.99 -19.33 16 10 C 0.13 3.97 5.11 85.56 0.44 4.41 16 11 C -0.19 -7.67 5.42 -19.67 -0.11 -7.78 16 12 C -0.09 -4.03 9.67 22.22 0.21 -3.82 16 13 C -0.19 -10.04 8.68 22.73 0.20 -9.85 16 14 C 0.08 4.26 5.57 -21.29 -0.12 4.14 16 15 C -0.51 -28.30 9.07 23.46 0.21 -28.08 16 16 H 0.07 3.84 7.88 -2.91 -0.02 3.82 16 17 C 0.03 1.73 5.23 85.26 0.45 2.17 16 18 N -0.83 -45.18 10.81 21.83 0.24 -44.95 16 19 Si 0.98 39.59 29.58 68.60 2.03 41.62 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 C -0.24 -12.04 9.80 22.73 0.22 -11.82 16 24 C -0.09 -3.84 9.67 22.22 0.21 -3.63 16 25 H 0.07 1.05 6.40 -2.39 -0.02 1.04 16 26 H 0.04 0.82 7.88 -2.39 -0.02 0.80 16 27 H 0.07 1.42 4.60 -2.39 -0.01 1.41 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.98 8.11 -2.39 -0.02 0.96 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 2.43 4.97 -2.39 -0.01 2.41 16 32 H 0.01 0.39 8.07 -2.39 -0.02 0.37 16 33 H 0.04 1.13 7.10 -2.39 -0.02 1.11 16 34 H 0.08 1.27 7.91 -2.39 -0.02 1.26 16 35 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 36 H 0.04 0.88 7.61 -2.39 -0.02 0.86 16 37 H 0.08 1.33 5.61 -2.39 -0.01 1.32 16 38 H 0.06 1.54 4.85 -2.39 -0.01 1.52 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.15 8.14 -2.38 -0.02 1.14 16 41 H 0.05 1.10 6.43 -2.38 -0.02 1.09 16 42 H 0.33 9.79 8.26 -89.69 -0.74 9.05 16 43 H 0.03 0.94 6.28 -2.39 -0.01 0.92 16 44 H 0.07 2.08 6.86 -2.39 -0.02 2.07 16 45 H 0.10 4.28 8.06 -2.91 -0.02 4.25 16 46 H 0.10 5.63 6.13 -2.91 -0.02 5.61 16 47 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 48 H 0.09 4.39 8.06 -2.91 -0.02 4.36 16 49 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -57.97 361.38 5.86 -52.11 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.18 Total: 38.26 kcal Atomic # 6 Polarization: -72.12 SS G_CDS: 4.41 Total: -67.72 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.76 Total: -64.28 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -57.97 5.86 -52.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398978588.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.311 kcal (2) G-P(sol) polarization free energy of solvation -57.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds