Wall clock time and date at job start Tue Mar 31 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 C 1.53005 * 109.46889 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46889 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.46658 * 173.77149 * 5 4 3 7 7 C 1.46908 * 110.99432 * 199.90763 * 6 5 4 8 8 C 1.50696 * 109.46808 * 169.99915 * 7 6 5 9 9 C 1.38637 * 119.74934 * 269.72259 * 8 7 6 10 10 C 1.37623 * 120.24823 * 179.72266 * 9 8 7 11 11 C 1.40718 * 119.74494 * 0.57304 * 10 9 8 12 12 C 1.41393 * 120.24266 * 179.68031 * 11 10 9 13 13 H 1.07998 * 119.99557 * 209.23615 * 12 11 10 14 14 C 1.39945 * 119.99869 * 29.24242 * 12 11 10 15 15 N 1.30821 * 120.00154 * 10.30442 * 14 12 11 16 16 Si 1.86805 * 119.99579 * 190.30203 * 14 12 11 17 17 H 1.48502 * 109.46970 * 60.00039 * 16 14 12 18 18 H 1.48498 * 109.46733 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47276 * 299.99821 * 16 14 12 20 20 C 1.40714 * 119.50834 * 359.70032 * 11 10 9 21 21 C 1.37614 * 119.74971 * 0.02562 * 20 11 10 22 22 C 1.46901 * 111.00598 * 75.95474 * 6 5 4 23 23 C 1.53002 * 109.46616 * 270.73225 * 22 6 5 24 24 C 1.53001 * 109.46780 * 30.72691 * 22 6 5 25 25 H 1.08999 * 109.46824 * 60.00345 * 1 2 3 26 26 H 1.09000 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47417 * 300.00347 * 1 2 3 28 28 H 1.09002 * 109.46739 * 239.99971 * 2 1 3 29 29 H 1.08999 * 109.46824 * 119.99655 * 2 1 3 30 30 H 1.09001 * 109.47374 * 59.99626 * 3 2 1 31 31 H 1.09002 * 109.46616 * 299.99621 * 3 2 1 32 32 H 1.09002 * 109.46739 * 59.99971 * 4 3 2 33 33 H 1.08999 * 109.46824 * 299.99655 * 4 3 2 34 34 H 1.08993 * 109.47596 * 53.76464 * 5 4 3 35 35 H 1.09005 * 109.46943 * 293.76802 * 5 4 3 36 36 H 1.08998 * 109.46778 * 289.99565 * 7 6 5 37 37 H 1.08994 * 109.47444 * 49.99496 * 7 6 5 38 38 H 1.08004 * 119.87537 * 359.97438 * 9 8 7 39 39 H 1.08002 * 120.12660 * 180.28318 * 10 9 8 40 40 H 0.97001 * 119.99790 * 180.02562 * 15 14 12 41 41 H 1.08007 * 120.12339 * 179.97438 * 20 11 10 42 42 H 1.07996 * 119.87793 * 179.97438 * 21 20 11 43 43 H 1.09000 * 109.47346 * 150.73141 * 22 6 5 44 44 H 1.09000 * 109.47281 * 68.58236 * 23 22 6 45 45 H 1.09002 * 109.46895 * 188.58073 * 23 22 6 46 46 H 1.09000 * 109.47160 * 308.57376 * 23 22 6 47 47 H 1.08998 * 109.47250 * 60.00304 * 24 22 6 48 48 H 1.08999 * 109.46558 * 180.02562 * 24 22 6 49 49 H 1.09000 * 109.47548 * 300.00326 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 7 5.5413 2.8876 0.1497 7 6 6.0198 4.1939 0.6217 8 6 7.4756 4.0900 0.9969 9 6 7.8293 3.7554 2.2949 10 6 9.1556 3.6520 2.6473 11 6 10.1543 3.8993 1.6873 12 6 11.5203 3.8027 2.0397 13 1 12.2542 4.4063 1.5265 14 6 11.9211 2.9249 3.0532 15 7 11.0743 2.0518 3.5350 16 14 13.6652 2.9998 3.7179 17 1 13.9200 4.3470 4.2885 18 1 13.8359 1.9728 4.7768 19 1 14.6265 2.7389 2.6164 20 6 9.7836 4.2437 0.3744 21 6 8.4511 4.3357 0.0429 22 6 6.2001 2.5086 -1.1075 23 6 6.3739 0.9892 -1.1541 24 6 5.3404 2.9601 -2.2899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 3.6288 3.4296 0.8293 35 1 3.8102 3.3662 -0.9402 36 1 5.9007 4.9325 -0.1710 37 1 5.4409 4.4997 1.4931 38 1 7.0610 3.5712 3.0314 39 1 9.4289 3.3868 3.6580 40 1 11.3521 1.4436 4.2378 41 1 10.5420 4.4360 -0.3703 42 1 8.1642 4.6003 -0.9641 43 1 7.1773 2.9881 -1.1646 44 1 5.3975 0.5146 -1.2507 45 1 6.9947 0.7207 -2.0089 46 1 6.8537 0.6501 -0.2360 47 1 5.2165 4.0425 -2.2567 48 1 5.8290 2.6785 -3.2227 49 1 4.3632 2.4806 -2.2328 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399036367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:06 Heat of formation + Delta-G solvation = 0.531679 kcal Electronic energy + Delta-G solvation = -23264.596144 eV Core-core repulsion = 20190.440906 eV Total energy + Delta-G solvation = -3074.155238 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.02026 -37.24207 -35.55662 -33.72936 -31.85180 -31.41057 -29.47118 -29.20040 -27.12862 -26.58551 -25.03590 -23.12675 -21.91940 -20.97676 -20.92158 -19.92683 -18.90742 -17.22814 -16.42075 -15.34756 -15.27900 -15.12474 -14.48986 -14.02756 -13.82005 -13.65560 -13.41737 -13.25929 -13.00309 -12.84103 -12.44262 -12.30010 -12.04683 -11.90282 -11.72812 -11.62052 -11.55067 -11.25795 -11.07985 -11.02924 -10.93180 -10.86031 -10.76739 -10.56428 -10.47284 -10.32713 -10.22386 -9.92859 -9.48227 -9.29372 -9.13851 -7.77206 -7.38410 -7.17864 -6.64316 -4.31757 2.80050 3.09158 3.10870 3.12593 3.21065 3.98227 4.29672 4.73879 4.81359 4.85752 5.02398 5.14660 5.26984 5.36959 5.38842 5.54671 5.59035 5.62165 5.68302 5.73507 5.76453 5.84346 5.89119 5.90130 5.94428 5.99107 6.01085 6.10858 6.13957 6.18365 6.19931 6.26673 6.34560 6.39241 6.48386 6.48696 6.66691 6.77628 6.99832 7.14012 7.33972 7.40859 7.61541 7.63566 7.67928 7.92946 8.11245 8.18702 8.36140 8.70713 8.95927 9.03000 10.29623 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023951 B = 0.003170 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.782689 B = 8832.055557 C = 9266.717951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.120 4.120 5 C 0.043 3.957 6 N -0.525 5.525 7 C 0.118 3.882 8 C -0.197 4.197 9 C -0.083 4.083 10 C -0.158 4.158 11 C 0.111 3.889 12 C -0.466 4.466 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.802 5.802 16 Si 0.909 3.091 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.222 4.222 21 C -0.090 4.090 22 C 0.068 3.932 23 C -0.141 4.141 24 C -0.180 4.180 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.021 0.979 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.279 0.721 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.047 0.953 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 -1.946 -6.322 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.157 4.157 5 C -0.085 4.085 6 N -0.248 5.248 7 C -0.008 4.008 8 C -0.198 4.198 9 C -0.102 4.102 10 C -0.177 4.177 11 C 0.109 3.891 12 C -0.496 4.496 13 H 0.092 0.908 14 C -0.143 4.143 15 N -0.428 5.428 16 Si 0.734 3.266 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.241 4.241 21 C -0.109 4.109 22 C -0.041 4.041 23 C -0.199 4.199 24 C -0.238 4.238 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.278 -2.487 -5.785 15.605 hybrid contribution 0.607 0.476 -0.304 0.829 sum -13.671 -2.012 -6.089 15.100 Atomic orbital electron populations 1.21782 0.96238 1.01327 1.01620 1.21525 0.95436 0.97211 1.02042 1.21603 0.96063 0.96429 1.01590 1.21815 0.93778 0.97154 1.02992 1.22301 0.89084 0.96835 1.00255 1.62306 1.03618 1.30011 1.28867 1.20771 0.94380 0.88074 0.97566 1.18895 0.92039 1.13925 0.94964 1.20507 0.95695 0.99369 0.94645 1.21359 0.91222 1.05179 0.99979 1.17615 0.93455 0.87993 0.90081 1.19524 0.93321 1.20659 1.16136 0.90766 1.25865 0.99419 0.93853 0.95144 1.69790 1.36193 1.14380 1.22461 0.86359 0.82371 0.78846 0.79016 1.18989 1.20410 1.19147 1.20985 0.94202 1.12655 0.96286 1.20336 0.93359 1.01030 0.96173 1.21800 0.98824 0.96706 0.86728 1.21961 1.00961 0.95173 1.01771 1.22472 1.01080 1.00796 0.99484 0.92961 0.93006 0.92848 0.92210 0.91962 0.92221 0.92540 0.91380 0.91178 0.91943 0.93996 0.96117 0.91865 0.89533 0.86394 0.91019 0.89218 0.89901 0.88884 0.92797 0.93439 0.91646 0.93253 0.92687 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.16 5.21 -26.73 -0.14 -1.30 16 4 C -0.12 -1.42 4.42 -26.73 -0.12 -1.53 16 5 C 0.04 0.57 4.49 -3.82 -0.02 0.55 16 6 N -0.52 -8.54 4.32 -228.08 -0.99 -9.53 16 7 C 0.12 2.10 5.08 -4.97 -0.03 2.08 16 8 C -0.20 -4.23 5.04 -104.33 -0.53 -4.76 16 9 C -0.08 -1.95 9.67 -39.66 -0.38 -2.34 16 10 C -0.16 -4.14 8.66 -38.87 -0.34 -4.47 16 11 C 0.11 2.98 5.55 -106.83 -0.59 2.39 16 12 C -0.47 -12.53 9.06 -37.74 -0.34 -12.87 16 13 H 0.07 1.92 7.87 -52.49 -0.41 1.50 16 14 C 0.07 1.88 5.26 -17.34 -0.09 1.79 16 15 N -0.80 -21.16 10.85 55.55 0.60 -20.55 16 16 Si 0.91 19.04 29.57 -169.99 -5.03 14.02 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 C -0.22 -5.46 9.80 -38.87 -0.38 -5.84 16 21 C -0.09 -2.00 7.95 -39.66 -0.32 -2.31 16 22 C 0.07 1.06 2.65 -67.71 -0.18 0.88 16 23 C -0.14 -2.12 9.03 37.16 0.34 -1.79 16 24 C -0.18 -2.32 7.85 37.16 0.29 -2.03 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.81 4.54 -51.93 -0.24 0.57 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.82 7.73 -51.93 -0.40 0.41 16 35 H 0.04 0.53 5.21 -51.93 -0.27 0.26 16 36 H 0.02 0.35 7.94 -51.93 -0.41 -0.06 16 37 H 0.06 1.08 7.76 -51.93 -0.40 0.67 16 38 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.12 3.21 6.24 -52.49 -0.33 2.89 16 40 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 41 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 42 H 0.08 1.64 7.27 -52.49 -0.38 1.26 16 43 H 0.09 1.69 4.56 -51.93 -0.24 1.46 16 44 H 0.05 0.71 5.09 -51.93 -0.26 0.45 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.64 7.83 -51.93 -0.41 0.23 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.74 5.35 -51.93 -0.28 0.46 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -26.76 372.98 -11.06 -37.82 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.66 Total: 6.27 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: -2.61 Total: -33.65 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: -0.38 Total: -30.08 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -26.76 -11.06 -37.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399036367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.350 kcal (2) G-P(sol) polarization free energy of solvation -26.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds