Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 C 1.53005 * 109.46889 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46889 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.46658 * 173.77149 * 5 4 3 7 7 C 1.46908 * 110.99432 * 199.90763 * 6 5 4 8 8 C 1.50696 * 109.46808 * 169.99915 * 7 6 5 9 9 C 1.38637 * 119.74934 * 269.72259 * 8 7 6 10 10 C 1.37623 * 120.24823 * 179.72266 * 9 8 7 11 11 C 1.40718 * 119.74494 * 0.57304 * 10 9 8 12 12 C 1.41393 * 120.24266 * 179.68031 * 11 10 9 13 13 H 1.07998 * 119.99557 * 209.23615 * 12 11 10 14 14 C 1.39945 * 119.99869 * 29.24242 * 12 11 10 15 15 N 1.30821 * 120.00154 * 10.30442 * 14 12 11 16 16 Si 1.86805 * 119.99579 * 190.30203 * 14 12 11 17 17 H 1.48502 * 109.46970 * 60.00039 * 16 14 12 18 18 H 1.48498 * 109.46733 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47276 * 299.99821 * 16 14 12 20 20 C 1.40714 * 119.50834 * 359.70032 * 11 10 9 21 21 C 1.37614 * 119.74971 * 0.02562 * 20 11 10 22 22 C 1.46901 * 111.00598 * 75.95474 * 6 5 4 23 23 C 1.53002 * 109.46616 * 270.73225 * 22 6 5 24 24 C 1.53001 * 109.46780 * 30.72691 * 22 6 5 25 25 H 1.08999 * 109.46824 * 60.00345 * 1 2 3 26 26 H 1.09000 * 109.47225 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47417 * 300.00347 * 1 2 3 28 28 H 1.09002 * 109.46739 * 239.99971 * 2 1 3 29 29 H 1.08999 * 109.46824 * 119.99655 * 2 1 3 30 30 H 1.09001 * 109.47374 * 59.99626 * 3 2 1 31 31 H 1.09002 * 109.46616 * 299.99621 * 3 2 1 32 32 H 1.09002 * 109.46739 * 59.99971 * 4 3 2 33 33 H 1.08999 * 109.46824 * 299.99655 * 4 3 2 34 34 H 1.08993 * 109.47596 * 53.76464 * 5 4 3 35 35 H 1.09005 * 109.46943 * 293.76802 * 5 4 3 36 36 H 1.08998 * 109.46778 * 289.99565 * 7 6 5 37 37 H 1.08994 * 109.47444 * 49.99496 * 7 6 5 38 38 H 1.08004 * 119.87537 * 359.97438 * 9 8 7 39 39 H 1.08002 * 120.12660 * 180.28318 * 10 9 8 40 40 H 0.97001 * 119.99790 * 180.02562 * 15 14 12 41 41 H 1.08007 * 120.12339 * 179.97438 * 20 11 10 42 42 H 1.07996 * 119.87793 * 179.97438 * 21 20 11 43 43 H 1.09000 * 109.47346 * 150.73141 * 22 6 5 44 44 H 1.09000 * 109.47281 * 68.58236 * 23 22 6 45 45 H 1.09002 * 109.46895 * 188.58073 * 23 22 6 46 46 H 1.09000 * 109.47160 * 308.57376 * 23 22 6 47 47 H 1.08998 * 109.47250 * 60.00304 * 24 22 6 48 48 H 1.08999 * 109.46558 * 180.02562 * 24 22 6 49 49 H 1.09000 * 109.47548 * 300.00326 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 7 5.5413 2.8876 0.1497 7 6 6.0198 4.1939 0.6217 8 6 7.4756 4.0900 0.9969 9 6 7.8293 3.7554 2.2949 10 6 9.1556 3.6520 2.6473 11 6 10.1543 3.8993 1.6873 12 6 11.5203 3.8027 2.0397 13 1 12.2542 4.4063 1.5265 14 6 11.9211 2.9249 3.0532 15 7 11.0743 2.0518 3.5350 16 14 13.6652 2.9998 3.7179 17 1 13.9200 4.3470 4.2885 18 1 13.8359 1.9728 4.7768 19 1 14.6265 2.7389 2.6164 20 6 9.7836 4.2437 0.3744 21 6 8.4511 4.3357 0.0429 22 6 6.2001 2.5086 -1.1075 23 6 6.3739 0.9892 -1.1541 24 6 5.3404 2.9601 -2.2899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 3.6288 3.4296 0.8293 35 1 3.8102 3.3662 -0.9402 36 1 5.9007 4.9325 -0.1710 37 1 5.4409 4.4997 1.4931 38 1 7.0610 3.5712 3.0314 39 1 9.4289 3.3868 3.6580 40 1 11.3521 1.4436 4.2378 41 1 10.5420 4.4360 -0.3703 42 1 8.1642 4.6003 -0.9641 43 1 7.1773 2.9881 -1.1646 44 1 5.3975 0.5146 -1.2507 45 1 6.9947 0.7207 -2.0089 46 1 6.8537 0.6501 -0.2360 47 1 5.2165 4.0425 -2.2567 48 1 5.8290 2.6785 -3.2227 49 1 4.3632 2.4806 -2.2328 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399036367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = -10.778605 kcal Electronic energy + Delta-G solvation = -23265.086595 eV Core-core repulsion = 20190.440906 eV Total energy + Delta-G solvation = -3074.645688 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.38099 -38.92121 -36.46504 -35.53486 -33.26544 -32.51916 -31.21103 -30.85934 -28.35958 -27.94944 -26.26627 -24.70009 -23.05150 -22.63597 -21.89756 -21.54674 -20.17805 -19.16359 -17.49825 -17.16717 -16.45353 -16.21569 -15.96441 -15.70694 -15.29626 -14.81832 -14.62744 -14.46041 -14.14535 -13.95827 -13.86600 -13.75235 -13.43244 -13.34633 -13.18958 -12.97759 -12.74070 -12.61487 -12.49459 -12.30105 -12.20793 -12.05781 -12.01137 -11.83478 -11.59671 -11.58512 -11.44963 -11.24581 -11.14434 -11.01465 -10.93561 -9.30249 -9.15955 -8.93868 -8.54875 -6.32929 0.98528 1.16750 1.37525 1.49288 1.52100 2.22442 2.72999 3.19398 3.79166 3.93997 4.00984 4.12370 4.22280 4.29234 4.32605 4.36589 4.41211 4.51865 4.55086 4.60941 4.68660 4.71800 4.77024 4.79462 4.82332 4.91470 4.94147 4.98820 5.06327 5.07333 5.08622 5.14764 5.18290 5.19280 5.26694 5.33111 5.39723 5.46622 5.47745 5.49744 5.57502 5.66515 5.74964 5.97465 6.13739 6.24398 6.38702 6.42954 6.48906 6.74896 6.98322 7.07408 8.40944 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023951 B = 0.003170 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.782689 B = 8832.055557 C = 9266.717951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.113 4.113 5 C 0.044 3.956 6 N -0.541 5.541 7 C 0.124 3.876 8 C -0.181 4.181 9 C -0.091 4.091 10 C -0.181 4.181 11 C 0.077 3.923 12 C -0.505 4.505 13 H 0.072 0.928 14 C 0.030 3.970 15 N -0.837 5.837 16 Si 0.983 3.017 17 H -0.260 1.260 18 H -0.269 1.269 19 H -0.261 1.261 20 C -0.237 4.237 21 C -0.086 4.086 22 C 0.065 3.935 23 C -0.137 4.137 24 C -0.171 4.171 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.284 0.716 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.032 0.968 47 H 0.051 0.949 48 H 0.065 0.935 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.141 -1.804 -7.674 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.150 4.150 5 C -0.083 4.083 6 N -0.265 5.265 7 C -0.003 4.003 8 C -0.183 4.183 9 C -0.109 4.109 10 C -0.201 4.201 11 C 0.075 3.925 12 C -0.535 4.535 13 H 0.090 0.910 14 C -0.183 4.183 15 N -0.464 5.464 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.256 4.256 21 C -0.104 4.104 22 C -0.044 4.044 23 C -0.194 4.194 24 C -0.229 4.229 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.129 0.871 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.053 -2.343 -7.149 17.729 hybrid contribution 0.993 0.426 0.038 1.081 sum -15.060 -1.916 -7.111 16.764 Atomic orbital electron populations 1.21767 0.95226 1.01856 1.01964 1.21523 0.96336 0.96653 1.01781 1.21546 0.94294 0.97051 1.02140 1.21732 0.95267 0.96024 1.02023 1.22377 0.86887 0.97849 1.01165 1.62211 1.05635 1.28982 1.29689 1.20683 0.91632 0.89390 0.98585 1.19323 0.94478 1.10722 0.93773 1.20726 0.94944 0.99171 0.96095 1.21298 0.92527 1.07019 0.99249 1.17948 0.93984 0.89328 0.91241 1.19777 0.93638 1.22079 1.18007 0.90955 1.26732 1.03839 0.92867 0.94820 1.69871 1.38319 1.15095 1.23087 0.85243 0.76776 0.79107 0.78471 1.18466 1.19322 1.18511 1.21192 0.95709 1.13010 0.95721 1.20619 0.92394 0.99827 0.97608 1.21781 0.98139 0.96623 0.87825 1.21924 1.01897 0.95162 1.00453 1.22371 1.01191 1.00967 0.98407 0.92337 0.92457 0.92780 0.92031 0.92745 0.92191 0.91420 0.91299 0.93173 0.91629 0.92450 0.94634 0.90950 0.88204 0.88432 0.90511 0.88759 0.87055 0.91566 0.90870 0.92529 0.94907 0.93001 0.91623 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.13 -1.99 5.93 30.60 0.18 -1.81 16 3 C -0.11 -1.90 5.21 30.60 0.16 -1.74 16 4 C -0.11 -2.42 4.42 30.60 0.14 -2.28 16 5 C 0.04 1.05 4.49 86.30 0.39 1.44 16 6 N -0.54 -16.59 4.32 -875.52 -3.78 -20.37 16 7 C 0.12 4.13 5.08 85.55 0.43 4.57 16 8 C -0.18 -7.69 5.04 -19.67 -0.10 -7.79 16 9 C -0.09 -4.32 9.67 22.22 0.21 -4.11 16 10 C -0.18 -9.92 8.66 22.73 0.20 -9.72 16 11 C 0.08 4.31 5.55 -21.29 -0.12 4.20 16 12 C -0.50 -28.28 9.06 23.46 0.21 -28.07 16 13 H 0.07 3.90 7.87 -2.91 -0.02 3.88 16 14 C 0.03 1.59 5.26 85.26 0.45 2.04 16 15 N -0.84 -45.87 10.85 21.83 0.24 -45.64 16 16 Si 0.98 39.85 29.57 68.60 2.03 41.88 16 17 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 C -0.24 -11.91 9.80 22.73 0.22 -11.68 16 21 C -0.09 -3.76 7.95 22.22 0.18 -3.58 16 22 C 0.06 1.90 2.65 44.92 0.12 2.02 16 23 C -0.14 -3.96 9.03 71.98 0.65 -3.31 16 24 C -0.17 -3.84 7.85 71.98 0.57 -3.27 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.46 4.54 -2.39 -0.01 1.44 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.53 7.73 -2.39 -0.02 1.51 16 35 H 0.06 1.21 5.21 -2.38 -0.01 1.20 16 36 H 0.04 1.09 7.94 -2.39 -0.02 1.07 16 37 H 0.07 2.29 7.76 -2.39 -0.02 2.27 16 38 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.10 5.64 6.24 -2.91 -0.02 5.62 16 40 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 41 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.11 4.20 7.27 -2.91 -0.02 4.17 16 43 H 0.07 2.31 4.56 -2.39 -0.01 2.30 16 44 H 0.07 1.80 5.09 -2.39 -0.01 1.79 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.05 1.15 7.83 -2.39 -0.02 1.13 16 48 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.08 1.50 5.35 -2.39 -0.01 1.49 16 Total: -1.00 -59.88 372.98 3.98 -55.91 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.90 Total: 32.62 kcal Atomic # 6 Polarization: -69.00 SS G_CDS: 4.60 Total: -64.40 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -3.55 Total: -66.01 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -59.88 3.98 -55.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399036367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.128 kcal (2) G-P(sol) polarization free energy of solvation -59.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds