Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46841 * 2 1 4 4 C 1.53004 * 109.47007 * 294.11802 * 3 2 1 5 5 C 1.52992 * 109.47187 * 293.77237 * 4 3 2 6 6 C 1.53001 * 109.47001 * 54.11354 * 3 2 1 7 7 N 1.46903 * 109.46799 * 66.70727 * 6 3 2 8 8 C 1.46901 * 111.00184 * 142.96604 * 7 6 3 9 9 C 1.52996 * 109.47280 * 296.04984 * 8 7 6 10 10 C 1.46899 * 110.99652 * 266.92316 * 7 6 3 11 11 C 1.50702 * 109.46869 * 170.70530 * 10 7 6 12 12 C 1.38636 * 119.74512 * 270.24536 * 11 10 7 13 13 C 1.37626 * 120.24603 * 180.26032 * 12 11 10 14 14 C 1.40717 * 119.74250 * 359.47076 * 13 12 11 15 15 C 1.41396 * 120.24147 * 180.30031 * 14 13 12 16 16 H 1.07998 * 119.99970 * 27.94562 * 15 14 13 17 17 C 1.39948 * 119.99548 * 207.94877 * 15 14 13 18 18 N 1.30817 * 120.00357 * 8.41936 * 17 15 14 19 19 Si 1.86801 * 119.99518 * 188.41328 * 17 15 14 20 20 H 1.48504 * 109.46812 * 90.00290 * 19 17 15 21 21 H 1.48501 * 109.47337 * 209.99740 * 19 17 15 22 22 H 1.48497 * 109.47671 * 330.00116 * 19 17 15 23 23 C 1.40712 * 119.51275 * 0.27732 * 14 13 12 24 24 C 1.37617 * 119.74696 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.47601 * 63.86646 * 1 2 3 26 26 H 1.09005 * 109.46835 * 183.86172 * 1 2 3 27 27 H 1.08999 * 109.47237 * 303.86257 * 1 2 3 28 28 H 1.08996 * 109.46976 * 240.00260 * 2 1 3 29 29 H 1.08994 * 109.47329 * 119.99594 * 2 1 3 30 30 H 1.08990 * 109.47324 * 174.11885 * 3 2 1 31 31 H 1.09004 * 109.46808 * 53.77205 * 4 3 2 32 32 H 1.08998 * 109.47009 * 173.76433 * 4 3 2 33 33 H 1.09005 * 109.47221 * 305.38120 * 5 4 3 34 34 H 1.09004 * 109.47303 * 65.38316 * 5 4 3 35 35 H 1.09005 * 109.47341 * 185.38740 * 5 4 3 36 36 H 1.08995 * 109.47811 * 306.70233 * 6 3 2 37 37 H 1.09004 * 109.46982 * 186.69683 * 6 3 2 38 38 H 1.09001 * 109.47057 * 56.04836 * 8 7 6 39 39 H 1.08999 * 109.47152 * 176.04697 * 8 7 6 40 40 H 1.09000 * 109.47152 * 186.00006 * 9 8 7 41 41 H 1.08997 * 109.47089 * 306.00152 * 9 8 7 42 42 H 1.09002 * 109.47010 * 65.99883 * 9 8 7 43 43 H 1.08992 * 109.47777 * 50.70157 * 10 7 6 44 44 H 1.09002 * 109.47230 * 290.69688 * 10 7 6 45 45 H 1.07999 * 119.88169 * 0.02562 * 12 11 10 46 46 H 1.07997 * 120.12885 * 179.74363 * 13 12 11 47 47 H 0.97001 * 120.00213 * 179.97438 * 18 17 15 48 48 H 1.08001 * 120.12935 * 180.02562 * 23 14 13 49 49 H 1.08005 * 119.88008 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6542 2.1199 -1.3166 5 6 2.4041 1.4536 -2.4718 6 6 1.4127 2.2052 1.1687 7 7 1.9107 1.6546 2.4363 8 6 2.1096 2.7179 3.4302 9 6 3.2006 3.6736 2.9432 10 6 1.0077 0.6160 2.9499 11 6 1.6567 -0.0812 4.1178 12 6 2.4501 -1.1967 3.8986 13 6 3.0434 -1.8445 4.9580 14 6 2.8511 -1.3637 6.2665 15 6 3.4609 -2.0173 7.3621 16 1 4.3844 -2.5592 7.2217 17 6 2.8674 -1.9620 8.6283 18 7 1.6717 -1.4501 8.7685 19 14 3.7826 -2.6193 10.1181 20 1 4.5907 -1.5300 10.7229 21 1 2.8057 -3.1236 11.1165 22 1 4.6790 -3.7268 9.6997 23 6 2.0481 -0.2275 6.4765 24 6 1.4604 0.4012 5.4026 25 1 -0.3634 0.4526 -0.9226 26 1 -0.3633 -1.0254 0.0692 27 1 -0.3634 0.5726 0.8533 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.1248 1.4445 0.1053 31 1 0.5803 2.0205 -1.4753 32 1 1.9187 3.1764 -1.2729 33 1 3.4746 1.4684 -2.2666 34 1 2.0684 0.4218 -2.5759 35 1 2.2039 1.9959 -3.3959 36 1 0.3283 2.1029 1.1292 37 1 1.6809 3.2595 1.1003 38 1 1.1783 3.2680 3.5650 39 1 2.4112 2.2758 4.3798 40 1 3.4231 4.3996 3.7252 41 1 4.1010 3.1068 2.7067 42 1 2.8547 4.1953 2.0508 43 1 0.8025 -0.1090 2.1624 44 1 0.0735 1.0746 3.2741 45 1 2.6001 -1.5611 2.8930 46 1 3.6577 -2.7158 4.7855 47 1 1.2602 -1.4121 9.6461 48 1 1.8942 0.1503 7.4765 49 1 0.8433 1.2733 5.5613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399056654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = -0.549566 kcal Electronic energy + Delta-G solvation = -23719.133320 eV Core-core repulsion = 20644.931196 eV Total energy + Delta-G solvation = -3074.202124 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.06814 -37.37948 -35.63680 -33.62793 -31.70023 -30.76891 -29.79209 -29.17605 -28.09324 -25.86628 -24.10888 -23.29619 -23.18280 -21.11142 -20.38715 -19.63138 -18.84057 -17.24688 -15.99523 -15.71387 -15.25271 -14.98372 -14.52540 -14.09430 -13.86583 -13.65008 -13.55926 -13.32514 -12.99239 -12.80541 -12.45851 -12.14655 -12.00238 -11.85747 -11.70842 -11.60774 -11.51024 -11.35207 -11.19211 -11.02456 -10.90785 -10.67385 -10.57323 -10.43720 -10.37575 -10.28672 -10.17431 -10.03677 -9.44721 -9.28690 -9.14318 -7.82116 -7.37078 -7.17667 -6.63976 -4.32689 2.77949 3.09150 3.12544 3.13523 3.21113 3.97414 4.31154 4.73448 4.88672 5.00376 5.02017 5.24330 5.37317 5.40969 5.44464 5.52228 5.58079 5.67735 5.73346 5.76381 5.79083 5.83637 5.84955 5.91069 5.95797 6.03719 6.11209 6.12260 6.17169 6.22440 6.34794 6.38721 6.41533 6.42687 6.49899 6.51074 6.57239 6.69811 6.98854 7.13672 7.32895 7.44693 7.59197 7.60904 7.68150 7.94374 8.11735 8.20051 8.36594 8.70734 8.96214 9.03281 10.28117 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.027230 B = 0.003446 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.017320 B = 8124.200606 C = 8501.079946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.123 4.123 3 C -0.077 4.077 4 C -0.121 4.121 5 C -0.151 4.151 6 C 0.048 3.952 7 N -0.527 5.527 8 C 0.047 3.953 9 C -0.146 4.146 10 C 0.105 3.895 11 C -0.198 4.198 12 C -0.074 4.074 13 C -0.223 4.223 14 C 0.108 3.892 15 C -0.462 4.462 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.806 5.806 19 Si 0.911 3.089 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.158 4.158 24 C -0.100 4.100 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.018 0.982 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.278 0.722 48 H 0.122 0.878 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 7.028 -13.869 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.161 4.161 3 C -0.096 4.096 4 C -0.159 4.159 5 C -0.208 4.208 6 C -0.080 4.080 7 N -0.251 5.251 8 C -0.081 4.081 9 C -0.203 4.203 10 C -0.021 4.021 11 C -0.199 4.199 12 C -0.093 4.093 13 C -0.243 4.243 14 C 0.106 3.894 15 C -0.493 4.493 16 H 0.093 0.907 17 C -0.144 4.144 18 N -0.432 5.432 19 Si 0.736 3.264 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.178 4.178 24 C -0.119 4.119 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.036 0.964 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.140 0.860 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.173 6.853 -13.768 15.424 hybrid contribution -0.510 0.070 0.943 1.074 sum -1.682 6.923 -12.825 14.671 Atomic orbital electron populations 1.22022 0.96728 1.01452 1.01571 1.21648 0.95407 0.96744 1.02264 1.21138 1.00810 0.94871 0.92789 1.21591 1.00289 0.99263 0.94775 1.21786 1.00509 1.00759 0.97730 1.22334 0.97414 0.97900 0.90389 1.62088 1.48362 1.11837 1.02833 1.22149 0.96648 0.91999 0.97269 1.21818 0.99697 0.98608 1.00188 1.21137 0.91695 0.93086 0.96145 1.18924 1.07751 1.00656 0.92594 1.20299 0.97083 0.95439 0.96463 1.21024 1.07775 1.01984 0.93478 1.17632 0.90158 0.89974 0.91627 1.19593 1.08186 1.29109 0.92413 0.90709 1.25878 0.94334 0.93769 1.00396 1.69782 1.12595 1.35711 1.25141 0.86274 0.79916 0.79822 0.80421 1.19447 1.20377 1.18736 1.21434 1.01955 0.96492 0.97881 1.20564 1.00026 0.98460 0.92887 0.93131 0.93087 0.92056 0.92507 0.90474 0.90668 0.92085 0.92524 0.92775 0.92592 0.93329 0.94112 0.91829 0.96203 0.89173 0.92846 0.91857 0.93519 0.90009 0.96363 0.89607 0.89204 0.91143 0.85981 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.28 37.16 0.31 -1.52 16 2 C -0.12 -1.50 4.95 -26.73 -0.13 -1.63 16 3 C -0.08 -0.90 2.35 -90.61 -0.21 -1.12 16 4 C -0.12 -1.17 5.29 -26.73 -0.14 -1.32 16 5 C -0.15 -1.34 9.57 37.15 0.36 -0.98 16 6 C 0.05 0.61 4.35 -3.82 -0.02 0.60 16 7 N -0.53 -8.31 4.27 -236.07 -1.01 -9.32 16 8 C 0.05 0.74 5.34 -3.83 -0.02 0.72 16 9 C -0.15 -1.94 9.75 37.16 0.36 -1.57 16 10 C 0.11 1.84 3.84 -4.98 -0.02 1.83 16 11 C -0.20 -4.23 4.91 -104.33 -0.51 -4.74 16 12 C -0.07 -1.66 9.67 -39.66 -0.38 -2.04 16 13 C -0.22 -5.52 9.80 -38.87 -0.38 -5.90 16 14 C 0.11 2.91 5.57 -106.83 -0.60 2.31 16 15 C -0.46 -12.43 9.07 -37.74 -0.34 -12.77 16 16 H 0.07 1.94 7.86 -52.49 -0.41 1.53 16 17 C 0.07 1.83 5.30 -17.34 -0.09 1.74 16 18 N -0.81 -21.08 10.67 55.55 0.59 -20.49 16 19 Si 0.91 19.03 29.57 -169.99 -5.03 14.00 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.16 -4.11 8.67 -38.87 -0.34 -4.45 16 24 C -0.10 -2.32 7.80 -39.66 -0.31 -2.63 16 25 H 0.05 0.51 6.65 -51.93 -0.35 0.16 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.75 4.59 -51.93 -0.24 0.51 16 28 H 0.06 0.63 6.47 -51.93 -0.34 0.30 16 29 H 0.08 1.12 6.11 -51.93 -0.32 0.80 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.58 6.41 -51.93 -0.33 0.25 16 32 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 6.74 -51.93 -0.35 0.15 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.04 0.53 5.56 -51.93 -0.29 0.24 16 37 H 0.06 0.78 5.77 -51.93 -0.30 0.48 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 1.66 5.59 -51.93 -0.29 1.37 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.55 6.40 -51.93 -0.33 0.22 16 43 H 0.08 1.34 3.57 -51.93 -0.19 1.16 16 44 H 0.02 0.32 8.07 -51.93 -0.42 -0.10 16 45 H 0.09 1.73 7.94 -52.49 -0.42 1.31 16 46 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 47 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 48 H 0.12 3.31 6.07 -52.49 -0.32 2.99 16 49 H 0.08 1.74 7.92 -52.48 -0.42 1.32 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -26.51 363.52 -10.67 -37.18 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.24 Total: 6.62 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: -2.47 Total: -33.47 kcal Atomic # 7 Polarization: -29.39 SS G_CDS: -0.41 Total: -29.81 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.51 -10.67 -37.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399056654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.631 kcal (2) G-P(sol) polarization free energy of solvation -26.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds