Wall clock time and date at job start Tue Mar 31 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46841 * 2 1 4 4 C 1.53004 * 109.47007 * 294.11802 * 3 2 1 5 5 C 1.52992 * 109.47187 * 293.77237 * 4 3 2 6 6 C 1.53001 * 109.47001 * 54.11354 * 3 2 1 7 7 N 1.46903 * 109.46799 * 66.70727 * 6 3 2 8 8 C 1.46901 * 111.00184 * 142.96604 * 7 6 3 9 9 C 1.52996 * 109.47280 * 296.04984 * 8 7 6 10 10 C 1.46899 * 110.99652 * 266.92316 * 7 6 3 11 11 C 1.50702 * 109.46869 * 170.70530 * 10 7 6 12 12 C 1.38636 * 119.74512 * 270.24536 * 11 10 7 13 13 C 1.37626 * 120.24603 * 180.26032 * 12 11 10 14 14 C 1.40717 * 119.74250 * 359.47076 * 13 12 11 15 15 C 1.41396 * 120.24147 * 180.30031 * 14 13 12 16 16 H 1.07998 * 119.99970 * 27.94562 * 15 14 13 17 17 C 1.39948 * 119.99548 * 207.94877 * 15 14 13 18 18 N 1.30817 * 120.00357 * 8.41936 * 17 15 14 19 19 Si 1.86801 * 119.99518 * 188.41328 * 17 15 14 20 20 H 1.48504 * 109.46812 * 90.00290 * 19 17 15 21 21 H 1.48501 * 109.47337 * 209.99740 * 19 17 15 22 22 H 1.48497 * 109.47671 * 330.00116 * 19 17 15 23 23 C 1.40712 * 119.51275 * 0.27732 * 14 13 12 24 24 C 1.37617 * 119.74696 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.47601 * 63.86646 * 1 2 3 26 26 H 1.09005 * 109.46835 * 183.86172 * 1 2 3 27 27 H 1.08999 * 109.47237 * 303.86257 * 1 2 3 28 28 H 1.08996 * 109.46976 * 240.00260 * 2 1 3 29 29 H 1.08994 * 109.47329 * 119.99594 * 2 1 3 30 30 H 1.08990 * 109.47324 * 174.11885 * 3 2 1 31 31 H 1.09004 * 109.46808 * 53.77205 * 4 3 2 32 32 H 1.08998 * 109.47009 * 173.76433 * 4 3 2 33 33 H 1.09005 * 109.47221 * 305.38120 * 5 4 3 34 34 H 1.09004 * 109.47303 * 65.38316 * 5 4 3 35 35 H 1.09005 * 109.47341 * 185.38740 * 5 4 3 36 36 H 1.08995 * 109.47811 * 306.70233 * 6 3 2 37 37 H 1.09004 * 109.46982 * 186.69683 * 6 3 2 38 38 H 1.09001 * 109.47057 * 56.04836 * 8 7 6 39 39 H 1.08999 * 109.47152 * 176.04697 * 8 7 6 40 40 H 1.09000 * 109.47152 * 186.00006 * 9 8 7 41 41 H 1.08997 * 109.47089 * 306.00152 * 9 8 7 42 42 H 1.09002 * 109.47010 * 65.99883 * 9 8 7 43 43 H 1.08992 * 109.47777 * 50.70157 * 10 7 6 44 44 H 1.09002 * 109.47230 * 290.69688 * 10 7 6 45 45 H 1.07999 * 119.88169 * 0.02562 * 12 11 10 46 46 H 1.07997 * 120.12885 * 179.74363 * 13 12 11 47 47 H 0.97001 * 120.00213 * 179.97438 * 18 17 15 48 48 H 1.08001 * 120.12935 * 180.02562 * 23 14 13 49 49 H 1.08005 * 119.88008 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6542 2.1199 -1.3166 5 6 2.4041 1.4536 -2.4718 6 6 1.4127 2.2052 1.1687 7 7 1.9107 1.6546 2.4363 8 6 2.1096 2.7179 3.4302 9 6 3.2006 3.6736 2.9432 10 6 1.0077 0.6160 2.9499 11 6 1.6567 -0.0812 4.1178 12 6 2.4501 -1.1967 3.8986 13 6 3.0434 -1.8445 4.9580 14 6 2.8511 -1.3637 6.2665 15 6 3.4609 -2.0173 7.3621 16 1 4.3844 -2.5592 7.2217 17 6 2.8674 -1.9620 8.6283 18 7 1.6717 -1.4501 8.7685 19 14 3.7826 -2.6193 10.1181 20 1 4.5907 -1.5300 10.7229 21 1 2.8057 -3.1236 11.1165 22 1 4.6790 -3.7268 9.6997 23 6 2.0481 -0.2275 6.4765 24 6 1.4604 0.4012 5.4026 25 1 -0.3634 0.4526 -0.9226 26 1 -0.3633 -1.0254 0.0692 27 1 -0.3634 0.5726 0.8533 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.1248 1.4445 0.1053 31 1 0.5803 2.0205 -1.4753 32 1 1.9187 3.1764 -1.2729 33 1 3.4746 1.4684 -2.2666 34 1 2.0684 0.4218 -2.5759 35 1 2.2039 1.9959 -3.3959 36 1 0.3283 2.1029 1.1292 37 1 1.6809 3.2595 1.1003 38 1 1.1783 3.2680 3.5650 39 1 2.4112 2.2758 4.3798 40 1 3.4231 4.3996 3.7252 41 1 4.1010 3.1068 2.7067 42 1 2.8547 4.1953 2.0508 43 1 0.8025 -0.1090 2.1624 44 1 0.0735 1.0746 3.2741 45 1 2.6001 -1.5611 2.8930 46 1 3.6577 -2.7158 4.7855 47 1 1.2602 -1.4121 9.6461 48 1 1.8942 0.1503 7.4765 49 1 0.8433 1.2733 5.5613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399056654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:07 Heat of formation + Delta-G solvation = -11.914330 kcal Electronic energy + Delta-G solvation = -23719.626133 eV Core-core repulsion = 20644.931196 eV Total energy + Delta-G solvation = -3074.694937 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.36063 -39.00466 -36.82808 -35.45593 -32.86986 -32.12388 -31.21880 -30.85956 -29.42794 -27.40075 -25.20696 -24.81369 -24.10193 -22.85736 -21.95595 -21.18285 -19.77852 -19.19254 -17.28105 -17.00119 -16.70436 -16.38138 -15.73701 -15.64548 -15.31332 -15.15138 -14.81441 -14.49360 -14.13138 -13.94928 -13.85532 -13.76995 -13.40651 -13.32892 -12.91007 -12.78302 -12.75259 -12.62104 -12.59633 -12.34667 -12.18231 -12.13443 -11.99526 -11.79547 -11.61079 -11.46329 -11.30663 -11.15842 -11.08751 -11.06141 -10.85657 -9.32796 -9.15675 -8.97098 -8.54069 -6.33541 0.96815 1.19153 1.37605 1.49728 1.52308 2.22223 2.73345 3.19906 3.79828 3.98656 4.06455 4.09391 4.21909 4.29360 4.33018 4.44151 4.48521 4.54506 4.56966 4.62821 4.63890 4.68908 4.72292 4.79606 4.86642 4.90731 5.01393 5.03416 5.07002 5.07183 5.16607 5.18886 5.21132 5.26279 5.36602 5.38752 5.39392 5.42920 5.49683 5.52208 5.59595 5.75097 5.75449 6.00418 6.14841 6.22073 6.34803 6.43886 6.45480 6.74969 6.98673 7.07785 8.40089 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.027230 B = 0.003446 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.017320 B = 8124.200606 C = 8501.079946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.072 4.072 4 C -0.116 4.116 5 C -0.150 4.150 6 C 0.049 3.951 7 N -0.535 5.535 8 C 0.045 3.955 9 C -0.137 4.137 10 C 0.113 3.887 11 C -0.183 4.183 12 C -0.076 4.076 13 C -0.238 4.238 14 C 0.076 3.924 15 C -0.502 4.502 16 H 0.071 0.929 17 C 0.030 3.970 18 N -0.837 5.837 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.181 4.181 24 C -0.100 4.100 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.020 0.980 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.284 0.716 48 H 0.103 0.897 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 7.942 -15.706 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C -0.091 4.091 4 C -0.153 4.153 5 C -0.207 4.207 6 C -0.078 4.078 7 N -0.259 5.259 8 C -0.082 4.082 9 C -0.195 4.195 10 C -0.014 4.014 11 C -0.185 4.185 12 C -0.095 4.095 13 C -0.258 4.258 14 C 0.074 3.926 15 C -0.532 4.532 16 H 0.089 0.911 17 C -0.183 4.183 18 N -0.465 5.465 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.184 1.184 23 C -0.201 4.201 24 C -0.119 4.119 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.038 0.962 45 H 0.129 0.871 46 H 0.111 0.889 47 H 0.095 0.905 48 H 0.121 0.879 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.533 7.777 -15.629 17.524 hybrid contribution -0.450 -0.140 1.352 1.432 sum -1.983 7.636 -14.277 16.312 Atomic orbital electron populations 1.21989 0.95981 1.01492 1.02022 1.21609 0.95994 0.96851 1.01474 1.21088 0.99815 0.94721 0.93510 1.21543 1.00739 0.99455 0.93608 1.21776 1.00134 1.00833 0.97961 1.22417 0.97816 0.98587 0.88987 1.62021 1.48140 1.11891 1.03830 1.22131 0.97782 0.92283 0.96048 1.21746 0.98277 0.98150 1.01320 1.21058 0.91508 0.93862 0.94932 1.19356 1.05937 0.99799 0.93402 1.20586 0.96471 0.95388 0.97022 1.21217 1.08417 1.02559 0.93578 1.17954 0.91251 0.90745 0.92695 1.19824 1.08804 1.30720 0.93860 0.91096 1.26729 0.94945 0.93695 1.02913 1.69855 1.13836 1.36598 1.26178 0.85169 0.78629 0.79221 0.76435 1.18738 1.19282 1.18384 1.21373 1.03536 0.97255 0.97925 1.20744 0.99602 0.98562 0.92976 0.91449 0.93125 0.92955 0.91528 0.93033 0.92032 0.91430 0.91813 0.93187 0.92677 0.92088 0.93500 0.90624 0.95439 0.92428 0.91844 0.92991 0.91518 0.88602 0.96197 0.87106 0.88855 0.90512 0.87892 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.28 71.98 0.60 -2.59 16 2 C -0.12 -2.69 4.95 30.60 0.15 -2.54 16 3 C -0.07 -1.52 2.35 -10.79 -0.03 -1.54 16 4 C -0.12 -1.87 5.29 30.59 0.16 -1.71 16 5 C -0.15 -2.24 9.57 71.98 0.69 -1.55 16 6 C 0.05 1.14 4.35 86.30 0.38 1.52 16 7 N -0.53 -15.99 4.27 -900.80 -3.84 -19.83 16 8 C 0.05 1.37 5.34 86.30 0.46 1.83 16 9 C -0.14 -3.40 9.75 71.98 0.70 -2.70 16 10 C 0.11 3.79 3.84 85.56 0.33 4.12 16 11 C -0.18 -7.82 4.91 -19.67 -0.10 -7.91 16 12 C -0.08 -3.40 9.67 22.22 0.21 -3.19 16 13 C -0.24 -12.11 9.80 22.73 0.22 -11.88 16 14 C 0.08 4.23 5.57 -21.29 -0.12 4.11 16 15 C -0.50 -28.12 9.07 23.46 0.21 -27.91 16 16 H 0.07 3.85 7.86 -2.91 -0.02 3.83 16 17 C 0.03 1.55 5.30 85.26 0.45 2.00 16 18 N -0.84 -45.30 10.67 21.83 0.23 -45.07 16 19 Si 0.98 39.72 29.57 68.60 2.03 41.75 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 C -0.18 -9.83 8.67 22.73 0.20 -9.63 16 24 C -0.10 -4.70 7.80 22.22 0.17 -4.53 16 25 H 0.07 1.13 6.65 -2.39 -0.02 1.12 16 26 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.05 1.15 4.59 -2.39 -0.01 1.14 16 28 H 0.07 1.34 6.47 -2.39 -0.02 1.32 16 29 H 0.05 1.41 6.11 -2.39 -0.01 1.39 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.03 6.41 -2.38 -0.02 1.01 16 32 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.05 0.83 6.74 -2.39 -0.02 0.81 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.05 1.06 5.56 -2.39 -0.01 1.05 16 37 H 0.08 1.59 5.77 -2.38 -0.01 1.58 16 38 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 2.12 5.59 -2.39 -0.01 2.11 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.38 6.40 -2.39 -0.02 1.36 16 43 H 0.10 2.98 3.57 -2.39 -0.01 2.97 16 44 H 0.02 0.67 8.07 -2.39 -0.02 0.65 16 45 H 0.11 4.35 7.94 -2.91 -0.02 4.33 16 46 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 47 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 48 H 0.10 5.90 6.07 -2.91 -0.02 5.88 16 49 H 0.10 4.15 7.92 -2.91 -0.02 4.13 16 Total: -1.00 -59.02 363.52 4.03 -55.00 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.91 Total: 32.24 kcal Atomic # 6 Polarization: -68.79 SS G_CDS: 4.70 Total: -64.09 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -3.61 Total: -64.90 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -59.02 4.03 -55.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399056654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.081 kcal (2) G-P(sol) polarization free energy of solvation -59.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds