Wall clock time and date at job start Tue Mar 31 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 S 1.81404 * 109.46946 * 239.99936 * 2 1 3 5 5 C 1.81396 * 103.00129 * 64.99967 * 4 2 1 6 6 C 1.50695 * 109.47187 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00219 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00035 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00186 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00132 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47127 * 90.00038 * 10 8 6 12 12 H 1.48505 * 109.47179 * 210.00366 * 10 8 6 13 13 H 1.48498 * 109.47110 * 330.00000 * 10 8 6 14 14 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 15 15 C 1.38247 * 119.99264 * 94.72152 * 14 2 1 16 16 C 1.38200 * 120.02259 * 179.72504 * 15 14 2 17 17 C 1.38375 * 120.01554 * 0.55172 * 16 15 14 18 18 Cl 1.73598 * 120.00541 * 179.74820 * 17 16 15 19 19 C 1.38313 * 119.98750 * 359.72298 * 17 16 15 20 20 C 1.38341 * 119.99441 * 274.99870 * 14 2 1 21 21 Cl 1.73600 * 120.00400 * 359.97438 * 20 14 2 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08996 * 109.47195 * 300.00407 * 5 4 2 26 26 H 1.09005 * 109.46706 * 60.00202 * 5 4 2 27 27 H 0.96998 * 120.00006 * 179.97438 * 9 8 6 28 28 H 1.08003 * 119.98545 * 359.97438 * 15 14 2 29 29 H 1.08006 * 119.98972 * 180.25702 * 16 15 14 30 30 H 1.07991 * 120.01407 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8552 -1.4812 5 6 1.5664 0.2152 -2.8309 6 6 1.9983 -0.3690 -4.1512 7 1 2.5583 -1.2922 -4.1758 8 6 1.6787 0.2750 -5.3276 9 7 0.9972 1.3994 -5.2976 10 14 2.2135 -0.4496 -6.9642 11 1 1.1586 -1.3649 -7.4687 12 1 2.4285 0.6456 -7.9438 13 1 3.4785 -1.2054 -6.7812 14 6 2.0323 -0.7104 1.2305 15 6 2.3556 -2.0532 1.1696 16 6 2.8217 -2.7039 2.2962 17 6 2.9543 -2.0145 3.4887 18 17 3.5336 -2.8338 4.9053 19 6 2.6256 -0.6725 3.5516 20 6 2.1644 -0.0201 2.4221 21 17 1.7522 1.6644 2.4998 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.4792 0.2881 -2.8037 26 1 2.0002 1.2084 -2.7142 27 1 0.7726 1.8527 -6.1253 28 1 2.2477 -2.5928 0.2403 29 1 3.0780 -3.7519 2.2471 30 1 2.7293 -0.1339 4.4819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010402.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:00 Heat of formation + Delta-G solvation = -9.413425 kcal Electronic energy + Delta-G solvation = -15681.713262 eV Core-core repulsion = 12847.104918 eV Total energy + Delta-G solvation = -2834.608344 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.71583 -36.95068 -36.41375 -34.00236 -33.17969 -31.05966 -29.48361 -28.36104 -24.01920 -23.18156 -23.06930 -21.14889 -17.55509 -16.70032 -16.31313 -15.73628 -15.01924 -14.50083 -14.40459 -14.15648 -13.94790 -13.34287 -13.01402 -12.58381 -12.45108 -12.29078 -12.02558 -11.98930 -11.54182 -11.32328 -11.15003 -11.10337 -10.91844 -10.74548 -10.65649 -9.88346 -9.61258 -9.08137 -8.85725 -8.67899 -8.63339 -6.78786 -6.21887 -4.26253 0.83972 0.98412 1.69353 2.16398 2.45951 3.24461 3.30457 3.33370 3.35751 3.73875 4.33254 4.56341 4.66315 4.81696 5.08217 5.15415 5.20072 5.34032 5.52299 5.66089 5.76071 5.91424 6.02328 6.06539 6.30379 6.39505 6.49446 7.07515 7.09446 7.72172 7.98282 8.75369 9.37010 10.89325 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.026444 B = 0.003784 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.604271 B = 7398.328269 C = 8209.293395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 H 0.097 0.903 4 S -0.289 6.289 5 C 0.089 3.911 6 C -0.513 4.513 7 H 0.067 0.933 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.271 1.271 14 C -0.036 4.036 15 C -0.079 4.079 16 C -0.103 4.103 17 C -0.031 4.031 18 Cl -0.067 7.067 19 C -0.104 4.104 20 C -0.021 4.021 21 Cl -0.056 7.056 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.266 0.734 28 H 0.156 0.844 29 H 0.140 0.860 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -4.418 18.263 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 H 0.115 0.885 4 S -0.060 6.060 5 C -0.057 4.057 6 C -0.552 4.552 7 H 0.085 0.915 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.195 1.195 14 C -0.038 4.038 15 C -0.098 4.098 16 C -0.122 4.122 17 C -0.058 4.058 18 Cl -0.038 7.038 19 C -0.124 4.124 20 C -0.049 4.049 21 Cl -0.027 7.027 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.174 0.826 29 H 0.158 0.842 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.869 -5.125 18.205 19.005 hybrid contribution -0.399 1.030 -0.684 1.299 sum 1.470 -4.095 17.521 18.053 Atomic orbital electron populations 1.22006 0.92181 1.03018 1.02499 1.21992 0.98959 1.01719 0.93473 0.88529 1.86462 1.76567 1.41829 1.01191 1.21120 0.98780 0.94662 0.91154 1.20661 1.36446 1.09266 0.88839 0.91490 1.24956 0.94781 0.94776 0.99293 1.69951 1.38459 1.16478 1.28133 0.86363 0.79229 0.78716 0.82426 1.20346 1.20982 1.19544 1.19509 0.97571 0.93955 0.92748 1.21253 0.96257 0.93301 0.98948 1.21169 0.99382 1.00855 0.90744 1.20710 1.03428 0.92711 0.88984 1.98370 1.87276 1.78740 1.39448 1.20771 1.00390 0.92889 0.98319 1.20601 1.03612 0.86350 0.94379 1.98378 1.91931 1.13975 1.98373 0.91558 0.92441 0.91063 0.94333 0.94641 0.92482 0.82613 0.84228 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.08 37.16 0.34 -1.78 16 2 C -0.03 -0.55 2.52 -27.88 -0.07 -0.62 16 3 H 0.10 1.66 7.12 -51.92 -0.37 1.29 16 4 S -0.29 -5.90 18.99 -107.50 -2.04 -7.95 16 5 C 0.09 2.25 5.39 36.00 0.19 2.44 16 6 C -0.51 -14.12 9.13 -34.44 -0.31 -14.43 16 7 H 0.07 1.84 7.71 -52.48 -0.40 1.44 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 10 Si 0.91 21.06 29.54 -169.99 -5.02 16.03 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 14 C -0.04 -0.52 5.00 -104.58 -0.52 -1.04 16 15 C -0.08 -1.06 9.10 -39.59 -0.36 -1.42 16 16 C -0.10 -1.17 9.83 -39.55 -0.39 -1.56 16 17 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 18 Cl -0.07 -0.66 28.96 -51.86 -1.50 -2.17 16 19 C -0.10 -1.19 9.62 -39.51 -0.38 -1.57 16 20 C -0.02 -0.28 6.31 -39.50 -0.25 -0.52 16 21 Cl -0.06 -0.70 27.16 -51.86 -1.41 -2.11 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 24 H 0.07 1.20 6.92 -51.93 -0.36 0.84 16 25 H 0.04 1.00 7.14 -51.93 -0.37 0.63 16 26 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.16 2.20 6.49 -52.48 -0.34 1.86 16 29 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 30 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -27.73 301.00 -9.88 -37.61 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -3.08 Total: -1.75 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.10 Total: -19.39 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.74 Total: -24.82 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -5.90 SS G_CDS: -2.04 Total: -7.95 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -2.91 Total: -4.27 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.73 -9.88 -37.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010402.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.196 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds