Wall clock time and date at job start Tue Mar 31 2020 06:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 S 1.81404 * 109.46946 * 239.99936 * 2 1 3 5 5 C 1.81396 * 103.00129 * 64.99967 * 4 2 1 6 6 C 1.50695 * 109.47187 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00219 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00035 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00186 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00132 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47127 * 90.00038 * 10 8 6 12 12 H 1.48505 * 109.47179 * 210.00366 * 10 8 6 13 13 H 1.48498 * 109.47110 * 330.00000 * 10 8 6 14 14 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 15 15 C 1.38247 * 119.99264 * 94.72152 * 14 2 1 16 16 C 1.38200 * 120.02259 * 179.72504 * 15 14 2 17 17 C 1.38375 * 120.01554 * 0.55172 * 16 15 14 18 18 Cl 1.73598 * 120.00541 * 179.74820 * 17 16 15 19 19 C 1.38313 * 119.98750 * 359.72298 * 17 16 15 20 20 C 1.38341 * 119.99441 * 274.99870 * 14 2 1 21 21 Cl 1.73600 * 120.00400 * 359.97438 * 20 14 2 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08996 * 109.47195 * 300.00407 * 5 4 2 26 26 H 1.09005 * 109.46706 * 60.00202 * 5 4 2 27 27 H 0.96998 * 120.00006 * 179.97438 * 9 8 6 28 28 H 1.08003 * 119.98545 * 359.97438 * 15 14 2 29 29 H 1.08006 * 119.98972 * 180.25702 * 16 15 14 30 30 H 1.07991 * 120.01407 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8552 -1.4812 5 6 1.5664 0.2152 -2.8309 6 6 1.9983 -0.3690 -4.1512 7 1 2.5583 -1.2922 -4.1758 8 6 1.6787 0.2750 -5.3276 9 7 0.9972 1.3994 -5.2976 10 14 2.2135 -0.4496 -6.9642 11 1 1.1586 -1.3649 -7.4687 12 1 2.4285 0.6456 -7.9438 13 1 3.4785 -1.2054 -6.7812 14 6 2.0323 -0.7104 1.2305 15 6 2.3556 -2.0532 1.1696 16 6 2.8217 -2.7039 2.2962 17 6 2.9543 -2.0145 3.4887 18 17 3.5336 -2.8338 4.9053 19 6 2.6256 -0.6725 3.5516 20 6 2.1644 -0.0201 2.4221 21 17 1.7522 1.6644 2.4998 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.4792 0.2881 -2.8037 26 1 2.0002 1.2084 -2.7142 27 1 0.7726 1.8527 -6.1253 28 1 2.2477 -2.5928 0.2403 29 1 3.0780 -3.7519 2.2471 30 1 2.7293 -0.1339 4.4819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010402.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:59 Heat of formation + Delta-G solvation = -21.543524 kcal Electronic energy + Delta-G solvation = -15682.239263 eV Core-core repulsion = 12847.104918 eV Total energy + Delta-G solvation = -2835.134344 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72263 -37.86191 -37.37154 -35.31216 -35.14619 -32.03626 -30.93186 -30.10469 -25.23900 -25.16034 -24.10197 -22.29659 -18.83173 -18.35984 -17.62463 -17.07776 -16.55526 -15.92900 -15.59081 -15.18778 -15.05938 -14.83194 -14.48762 -14.23982 -14.15163 -13.48544 -13.40483 -13.02762 -12.94351 -12.75233 -12.53061 -12.46551 -12.07898 -11.98919 -11.86772 -11.74687 -11.48555 -10.73409 -10.60220 -10.02771 -9.68503 -8.48452 -8.32183 -6.45117 -0.16868 0.01588 0.75998 0.92235 1.21533 1.41169 1.41902 1.54087 1.94728 2.35234 2.37493 3.02742 3.40138 3.67486 3.90772 4.01298 4.02443 4.18231 4.35865 4.61588 4.70075 4.77447 4.85382 4.95734 4.97748 5.03946 5.15694 5.23540 5.48231 5.58138 5.90418 6.62583 7.22960 8.79765 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.026444 B = 0.003784 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.604271 B = 7398.328269 C = 8209.293395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 H 0.088 0.912 4 S -0.280 6.280 5 C 0.089 3.911 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.015 3.985 9 N -0.925 5.925 10 Si 0.974 3.026 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.265 1.265 14 C -0.054 4.054 15 C -0.089 4.089 16 C -0.094 4.094 17 C -0.029 4.029 18 Cl -0.049 7.049 19 C -0.097 4.097 20 C -0.025 4.025 21 Cl -0.055 7.055 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.020 0.980 26 H 0.008 0.992 27 H 0.270 0.730 28 H 0.146 0.854 29 H 0.163 0.837 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.005 -5.659 19.627 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 H 0.106 0.894 4 S -0.051 6.051 5 C -0.059 4.059 6 C -0.574 4.574 7 H 0.082 0.918 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.798 3.202 11 H -0.194 1.194 12 H -0.203 1.203 13 H -0.189 1.189 14 C -0.056 4.056 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.056 4.056 18 Cl -0.020 7.020 19 C -0.117 4.117 20 C -0.053 4.053 21 Cl -0.026 7.026 22 H 0.090 0.910 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.027 0.973 27 H 0.078 0.922 28 H 0.163 0.837 29 H 0.180 0.820 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.522 -6.373 19.578 20.743 hybrid contribution -0.582 1.394 -0.912 1.765 sum 1.939 -4.979 18.666 19.416 Atomic orbital electron populations 1.21945 0.91408 1.03385 1.02422 1.21970 0.99630 1.00989 0.92373 0.89396 1.86202 1.76686 1.40877 1.01353 1.20796 0.97437 0.94466 0.93159 1.20995 1.36697 1.09360 0.90304 0.91829 1.25893 0.94536 0.95028 1.03129 1.70062 1.39345 1.17710 1.29303 0.85302 0.79085 0.78143 0.77693 1.19371 1.20266 1.18901 1.19340 0.99548 0.94505 0.92177 1.21170 0.97228 0.92954 0.99414 1.21352 0.98065 1.01848 0.90003 1.20807 1.02545 0.92725 0.89509 1.98385 1.86950 1.78355 1.38352 1.20990 0.99129 0.93072 0.98467 1.20608 1.03956 0.86427 0.94350 1.98381 1.91951 1.13920 1.98347 0.90978 0.90264 0.93212 0.96211 0.97319 0.92154 0.83654 0.81953 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.08 71.98 0.65 -3.45 16 2 C -0.02 -0.70 2.52 29.85 0.08 -0.62 16 3 H 0.09 3.08 7.12 -2.39 -0.02 3.06 16 4 S -0.28 -11.68 18.99 -56.49 -1.07 -12.75 16 5 C 0.09 4.65 5.39 71.23 0.38 5.04 16 6 C -0.53 -30.19 9.13 25.60 0.23 -29.96 16 7 H 0.06 3.55 7.71 -2.91 -0.02 3.53 16 8 C 0.01 0.83 5.46 84.65 0.46 1.29 16 9 N -0.93 -54.22 13.29 21.45 0.28 -53.94 16 10 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 14 C -0.05 -1.50 5.00 -19.84 -0.10 -1.60 16 15 C -0.09 -2.27 9.10 22.26 0.20 -2.06 16 16 C -0.09 -1.92 9.83 22.29 0.22 -1.70 16 17 C -0.03 -0.56 6.32 22.32 0.14 -0.42 16 18 Cl -0.05 -0.83 28.96 -2.72 -0.08 -0.90 16 19 C -0.10 -1.96 9.62 22.31 0.21 -1.75 16 20 C -0.03 -0.61 6.31 22.32 0.14 -0.47 16 21 Cl -0.06 -1.32 27.16 -2.72 -0.07 -1.39 16 22 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.08 2.09 7.90 -2.39 -0.02 2.07 16 24 H 0.05 1.74 6.92 -2.39 -0.02 1.72 16 25 H 0.02 1.08 7.14 -2.39 -0.02 1.06 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 28 H 0.15 4.01 6.49 -2.91 -0.02 3.99 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.16 2.58 8.06 -2.92 -0.02 2.56 16 Total: -1.00 -59.92 301.00 4.87 -55.05 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 1.15 Total: 4.29 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 2.63 Total: -35.70 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.28 Total: -53.94 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -11.68 SS G_CDS: -1.07 Total: -12.75 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.15 Total: -2.29 kcal Total: -59.92 4.87 -55.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010402.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.504 kcal (2) G-P(sol) polarization free energy of solvation -59.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds