Wall clock time and date at job start Tue Mar 31 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47324 * 2 1 4 4 S 1.81406 * 109.46923 * 120.00178 * 2 1 3 5 5 C 1.81399 * 102.99820 * 294.99593 * 4 2 1 6 6 C 1.50700 * 109.47217 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00380 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00531 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99871 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46983 * 89.99884 * 10 8 6 12 12 H 1.48494 * 109.47370 * 210.00053 * 10 8 6 13 13 H 1.48502 * 109.47018 * 330.00089 * 10 8 6 14 14 C 1.50707 * 109.47399 * 239.99950 * 2 1 3 15 15 C 1.38223 * 119.99734 * 266.21116 * 14 2 1 16 16 C 1.38334 * 119.99549 * 180.27050 * 15 14 2 17 17 Cl 1.73601 * 119.99875 * 179.71607 * 16 15 14 18 18 C 1.38375 * 120.00218 * 359.74478 * 16 15 14 19 19 C 1.38178 * 119.99680 * 359.97438 * 18 16 15 20 20 C 1.38324 * 119.99791 * 85.96652 * 14 2 1 21 21 Cl 1.73599 * 120.00423 * 0.02562 * 20 14 2 22 22 H 1.08998 * 109.46740 * 300.00494 * 1 2 3 23 23 H 1.09003 * 109.46424 * 59.99754 * 1 2 3 24 24 H 1.08998 * 109.47324 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47718 * 300.00260 * 5 4 2 26 26 H 1.09002 * 109.47101 * 60.00321 * 5 4 2 27 27 H 0.96999 * 119.99978 * 179.97438 * 9 8 6 28 28 H 1.07994 * 120.00281 * 359.97438 * 15 14 2 29 29 H 1.07997 * 120.00156 * 179.97438 * 18 16 15 30 30 H 1.08001 * 119.99656 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1346 -0.8552 1.4812 5 6 1.5665 0.2153 2.8309 6 6 1.9973 -0.3696 4.1513 7 1 2.5574 -1.2928 4.1759 8 6 1.6766 0.2738 5.3278 9 7 2.0530 -0.2363 6.4800 10 14 0.7073 1.8701 5.2852 11 1 -0.7456 1.5687 5.3439 12 1 1.0860 2.7104 6.4494 13 1 1.0110 2.6002 4.0282 14 6 2.0324 -0.7104 -1.2305 15 6 2.3374 -2.0574 -1.1746 16 6 2.8039 -2.7083 -2.3027 17 17 3.1939 -4.3983 -2.2307 18 6 2.9602 -2.0120 -3.4883 19 6 2.6498 -0.6668 -3.5455 20 6 2.1835 -0.0156 -2.4170 21 17 1.7951 1.6748 -2.4886 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 2.0001 1.2085 2.7142 26 1 0.4792 0.2881 2.8037 27 1 1.8277 0.2165 7.3077 28 1 2.2160 -2.6007 -0.2492 29 1 3.3248 -2.5200 -4.3688 30 1 2.7722 -0.1233 -4.4707 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010451.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:02 Heat of formation + Delta-G solvation = -4.386439 kcal Electronic energy + Delta-G solvation = -15810.388104 eV Core-core repulsion = 12975.997746 eV Total energy + Delta-G solvation = -2834.390357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.77473 -36.93982 -36.35663 -34.24765 -33.07856 -30.83757 -29.86030 -29.05392 -24.24182 -23.02898 -22.65995 -21.21620 -17.49242 -16.95663 -16.49456 -16.03669 -15.17701 -14.48592 -14.32248 -14.11516 -13.91740 -13.52051 -13.04216 -12.80839 -12.63348 -12.49069 -12.20754 -12.08556 -11.67086 -11.53351 -11.13684 -11.06566 -10.86013 -10.71301 -10.37670 -10.12334 -9.64854 -9.12634 -8.99628 -8.73851 -8.70346 -6.91630 -6.20483 -4.22838 0.74541 0.97348 1.82853 2.04414 2.31803 3.18807 3.25438 3.27382 3.27800 3.54568 4.28450 4.35052 4.56073 4.89882 5.02198 5.10674 5.16558 5.21928 5.36054 5.62659 5.71524 5.79663 5.89256 6.01446 6.11471 6.26791 6.39968 6.56197 6.66849 7.39796 8.27311 8.81991 9.35147 10.91564 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.004804 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.264683 B = 5826.754609 C = 7103.503904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 H 0.098 0.902 4 S -0.249 6.249 5 C 0.045 3.955 6 C -0.514 4.514 7 H 0.084 0.916 8 C 0.081 3.919 9 N -0.890 5.890 10 Si 0.876 3.124 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.266 1.266 14 C -0.030 4.030 15 C -0.083 4.083 16 C -0.028 4.028 17 Cl -0.062 7.062 18 C -0.106 4.106 19 C -0.099 4.099 20 C -0.028 4.028 21 Cl -0.061 7.061 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.268 0.732 28 H 0.158 0.842 29 H 0.141 0.859 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -0.687 -21.716 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 H 0.116 0.884 4 S -0.020 6.020 5 C -0.103 4.103 6 C -0.553 4.553 7 H 0.102 0.898 8 C -0.124 4.124 9 N -0.528 5.528 10 Si 0.703 3.297 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.032 4.032 15 C -0.102 4.102 16 C -0.055 4.055 17 Cl -0.033 7.033 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.056 4.056 21 Cl -0.031 7.031 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.175 0.825 29 H 0.159 0.841 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.370 -1.596 -21.421 21.484 hybrid contribution -1.124 2.015 0.114 2.310 sum -1.494 0.419 -21.307 21.363 Atomic orbital electron populations 1.22023 0.92170 1.03266 1.02371 1.22081 0.99070 1.01918 0.93939 0.88375 1.86675 1.75879 1.40043 0.99403 1.21491 0.98247 0.95836 0.94702 1.20457 1.37180 1.10835 0.86841 0.89814 1.24841 0.95266 0.97298 0.94967 1.69862 1.45772 1.39592 0.97571 0.86838 0.80800 0.83894 0.78219 1.19842 1.20773 1.19047 1.19238 0.98067 0.93025 0.92911 1.21156 0.97118 0.93449 0.98476 1.20965 1.02836 0.86232 0.95446 1.98384 1.92506 1.13784 1.98659 1.20963 1.00862 0.93583 0.97084 1.20911 0.99343 0.93969 0.97610 1.20850 1.03714 0.86063 0.95016 1.98373 1.92548 1.13828 1.98397 0.91384 0.92256 0.91268 0.94709 0.94938 0.92200 0.82502 0.84137 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.08 37.16 0.34 -1.66 16 2 C -0.04 -0.66 2.54 -27.88 -0.07 -0.73 16 3 H 0.10 1.57 7.08 -51.92 -0.37 1.20 16 4 S -0.25 -5.03 19.03 -107.50 -2.05 -7.07 16 5 C 0.04 1.06 4.46 36.01 0.16 1.22 16 6 C -0.51 -14.46 9.68 -34.44 -0.33 -14.80 16 7 H 0.08 2.59 7.96 -52.48 -0.42 2.17 16 8 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 9 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 10 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 14 C -0.03 -0.43 4.99 -104.59 -0.52 -0.95 16 15 C -0.08 -1.15 8.88 -39.55 -0.35 -1.50 16 16 C -0.03 -0.33 6.32 -39.50 -0.25 -0.58 16 17 Cl -0.06 -0.71 28.96 -51.86 -1.50 -2.21 16 18 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 19 C -0.10 -0.99 9.83 -39.55 -0.39 -1.37 16 20 C -0.03 -0.34 6.31 -39.50 -0.25 -0.59 16 21 Cl -0.06 -0.70 27.27 -51.86 -1.41 -2.12 16 22 H 0.07 1.03 6.92 -51.93 -0.36 0.67 16 23 H 0.06 0.74 8.03 -51.93 -0.42 0.32 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.03 0.82 7.20 -51.92 -0.37 0.44 16 26 H 0.03 0.74 6.57 -51.92 -0.34 0.40 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.16 2.39 6.53 -52.49 -0.34 2.04 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 297.68 15.07 4.49 4.49 Total: -1.00 -29.06 297.68 -9.58 -38.63 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -3.05 Total: -1.65 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.15 Total: -20.21 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.77 Total: -25.95 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 16 Polarization: -5.03 SS G_CDS: -2.05 Total: -7.07 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -2.92 Total: -4.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.06 -9.58 -38.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010451.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.247 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds