Wall clock time and date at job start Tue Mar 31 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47324 * 2 1 4 4 S 1.81406 * 109.46923 * 120.00178 * 2 1 3 5 5 C 1.81399 * 102.99820 * 294.99593 * 4 2 1 6 6 C 1.50700 * 109.47217 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00380 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00531 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99871 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46983 * 89.99884 * 10 8 6 12 12 H 1.48494 * 109.47370 * 210.00053 * 10 8 6 13 13 H 1.48502 * 109.47018 * 330.00089 * 10 8 6 14 14 C 1.50707 * 109.47399 * 239.99950 * 2 1 3 15 15 C 1.38223 * 119.99734 * 266.21116 * 14 2 1 16 16 C 1.38334 * 119.99549 * 180.27050 * 15 14 2 17 17 Cl 1.73601 * 119.99875 * 179.71607 * 16 15 14 18 18 C 1.38375 * 120.00218 * 359.74478 * 16 15 14 19 19 C 1.38178 * 119.99680 * 359.97438 * 18 16 15 20 20 C 1.38324 * 119.99791 * 85.96652 * 14 2 1 21 21 Cl 1.73599 * 120.00423 * 0.02562 * 20 14 2 22 22 H 1.08998 * 109.46740 * 300.00494 * 1 2 3 23 23 H 1.09003 * 109.46424 * 59.99754 * 1 2 3 24 24 H 1.08998 * 109.47324 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47718 * 300.00260 * 5 4 2 26 26 H 1.09002 * 109.47101 * 60.00321 * 5 4 2 27 27 H 0.96999 * 119.99978 * 179.97438 * 9 8 6 28 28 H 1.07994 * 120.00281 * 359.97438 * 15 14 2 29 29 H 1.07997 * 120.00156 * 179.97438 * 18 16 15 30 30 H 1.08001 * 119.99656 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1346 -0.8552 1.4812 5 6 1.5665 0.2153 2.8309 6 6 1.9973 -0.3696 4.1513 7 1 2.5574 -1.2928 4.1759 8 6 1.6766 0.2738 5.3278 9 7 2.0530 -0.2363 6.4800 10 14 0.7073 1.8701 5.2852 11 1 -0.7456 1.5687 5.3439 12 1 1.0860 2.7104 6.4494 13 1 1.0110 2.6002 4.0282 14 6 2.0324 -0.7104 -1.2305 15 6 2.3374 -2.0574 -1.1746 16 6 2.8039 -2.7083 -2.3027 17 17 3.1939 -4.3983 -2.2307 18 6 2.9602 -2.0120 -3.4883 19 6 2.6498 -0.6668 -3.5455 20 6 2.1835 -0.0156 -2.4170 21 17 1.7951 1.6748 -2.4886 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 2.0001 1.2085 2.7142 26 1 0.4792 0.2881 2.8037 27 1 1.8277 0.2165 7.3077 28 1 2.2160 -2.6007 -0.2492 29 1 3.3248 -2.5200 -4.3688 30 1 2.7722 -0.1233 -4.4707 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010451.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:02 Heat of formation + Delta-G solvation = -18.853184 kcal Electronic energy + Delta-G solvation = -15811.015429 eV Core-core repulsion = 12975.997746 eV Total energy + Delta-G solvation = -2835.017683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.71559 -37.84885 -37.26750 -35.34373 -35.19694 -31.86576 -31.45265 -30.43566 -25.31329 -24.70661 -23.95168 -22.31475 -19.15498 -18.36924 -17.68014 -17.07560 -16.61011 -16.00075 -15.56970 -15.30947 -15.05523 -14.85932 -14.68491 -14.38262 -14.04099 -13.55776 -13.33246 -13.06743 -13.01778 -12.74795 -12.57360 -12.13877 -12.07126 -12.03297 -11.90451 -11.73591 -11.61665 -10.89329 -10.60555 -10.07823 -9.63479 -8.55865 -8.37918 -6.47372 -0.18550 0.05184 0.84026 0.92267 1.13474 1.32772 1.34657 1.45051 1.87996 2.28284 2.35833 2.95171 3.30758 3.68797 3.96608 4.00882 4.05758 4.21182 4.34498 4.58046 4.66487 4.70585 4.76839 4.78989 4.90669 5.07206 5.09813 5.15042 5.34244 5.49142 6.06434 6.56627 7.15110 8.78000 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.004804 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.264683 B = 5826.754609 C = 7103.503904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 H 0.098 0.902 4 S -0.277 6.277 5 C 0.047 3.953 6 C -0.528 4.528 7 H 0.036 0.964 8 C 0.021 3.979 9 N -0.940 5.940 10 Si 0.950 3.050 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.246 1.246 14 C -0.049 4.049 15 C -0.101 4.101 16 C -0.034 4.034 17 Cl -0.061 7.061 18 C -0.092 4.092 19 C -0.086 4.086 20 C -0.032 4.032 21 Cl -0.055 7.055 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.272 0.728 28 H 0.134 0.866 29 H 0.174 0.826 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 0.916 -24.861 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 H 0.117 0.883 4 S -0.048 6.048 5 C -0.101 4.101 6 C -0.567 4.567 7 H 0.054 0.946 8 C -0.179 4.179 9 N -0.579 5.579 10 Si 0.772 3.228 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.170 1.170 14 C -0.051 4.051 15 C -0.120 4.120 16 C -0.061 4.061 17 Cl -0.032 7.032 18 C -0.110 4.110 19 C -0.105 4.105 20 C -0.060 4.060 21 Cl -0.026 7.026 22 H 0.078 0.922 23 H 0.102 0.898 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.152 0.848 29 H 0.191 0.809 30 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.143 -0.005 -24.574 24.601 hybrid contribution -0.805 1.402 0.965 1.882 sum -1.948 1.397 -23.610 23.731 Atomic orbital electron populations 1.22005 0.91016 1.03484 1.03057 1.22063 0.99958 1.01235 0.91919 0.88338 1.86740 1.76533 1.40449 1.01110 1.21258 0.98744 0.96158 0.93955 1.20657 1.36801 1.09549 0.89647 0.94567 1.25864 0.96303 1.01502 0.94227 1.70018 1.47520 1.41770 0.98573 0.85671 0.79388 0.78689 0.79079 1.18444 1.20273 1.16974 1.19076 0.99999 0.93161 0.92865 1.20983 0.98854 0.93687 0.98511 1.21071 1.02875 0.86442 0.95702 1.98385 1.92457 1.13709 1.98686 1.21349 0.99039 0.93544 0.97106 1.21305 0.97289 0.93930 0.97978 1.20939 1.03780 0.86324 0.94944 1.98378 1.92520 1.13381 1.98349 0.92216 0.89837 0.91365 0.94399 0.93832 0.91856 0.84781 0.80900 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.08 71.98 0.65 -3.07 16 2 C -0.02 -0.71 2.54 29.85 0.08 -0.64 16 3 H 0.10 3.01 7.08 -2.39 -0.02 3.00 16 4 S -0.28 -11.46 19.03 -56.49 -1.07 -12.53 16 5 C 0.05 2.21 4.46 71.24 0.32 2.53 16 6 C -0.53 -30.83 9.68 25.60 0.25 -30.58 16 7 H 0.04 2.39 7.96 -2.91 -0.02 2.36 16 8 C 0.02 1.21 5.47 84.65 0.46 1.68 16 9 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 10 Si 0.95 42.69 27.47 68.60 1.88 44.58 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 13 H -0.25 -10.21 6.54 99.48 0.65 -9.55 16 14 C -0.05 -1.31 4.99 -19.85 -0.10 -1.41 16 15 C -0.10 -2.75 8.88 22.29 0.20 -2.55 16 16 C -0.03 -0.75 6.32 22.33 0.14 -0.61 16 17 Cl -0.06 -1.33 28.96 -2.72 -0.08 -1.40 16 18 C -0.09 -1.47 9.83 22.29 0.22 -1.26 16 19 C -0.09 -1.37 9.83 22.29 0.22 -1.15 16 20 C -0.03 -0.68 6.31 22.32 0.14 -0.54 16 21 Cl -0.06 -1.12 27.27 -2.72 -0.07 -1.20 16 22 H 0.06 1.72 6.92 -2.39 -0.02 1.70 16 23 H 0.08 1.87 8.03 -2.39 -0.02 1.85 16 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.04 1.76 7.20 -2.39 -0.02 1.74 16 26 H 0.04 1.96 6.57 -2.39 -0.02 1.94 16 27 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.13 4.23 6.53 -2.91 -0.02 4.22 16 29 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -65.47 297.68 4.63 -60.84 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 1.10 Total: 5.30 kcal Atomic # 6 Polarization: -40.17 SS G_CDS: 2.58 Total: -37.59 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.30 Total: -57.99 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: -11.46 SS G_CDS: -1.07 Total: -12.53 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.15 Total: -2.60 kcal Total: -65.47 4.63 -60.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010451.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.984 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds