Wall clock time and date at job start Tue Mar 31 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99731 * 2 1 4 4 H 1.48500 * 109.47104 * 269.99829 * 3 2 1 5 5 H 1.48497 * 109.47222 * 30.00079 * 3 2 1 6 6 H 1.48505 * 109.46801 * 149.99575 * 3 2 1 7 7 C 1.37878 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00288 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47435 * 179.97438 * 9 7 2 11 11 C 1.81395 * 103.00352 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47276 * 180.02562 * 11 10 9 13 13 O 1.42906 * 109.47149 * 180.02562 * 12 11 10 14 14 C 1.35918 * 116.99763 * 180.02562 * 13 12 11 15 15 C 1.38750 * 120.03368 * 0.27595 * 14 13 12 16 16 C 1.38145 * 120.00432 * 180.25540 * 15 14 13 17 17 C 1.38336 * 120.06676 * 359.44332 * 16 15 14 18 18 Cl 1.73604 * 119.97231 * 180.27889 * 17 16 15 19 19 C 1.38572 * 120.06024 * 0.30568 * 17 16 15 20 20 F 1.35102 * 120.00266 * 179.97438 * 19 17 16 21 21 C 1.38365 * 119.99838 * 359.97112 * 19 17 16 22 22 H 0.96996 * 120.00381 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46904 * 60.00194 * 9 7 2 24 24 H 1.08999 * 109.47160 * 300.00094 * 9 7 2 25 25 H 1.09008 * 109.47117 * 59.99970 * 11 10 9 26 26 H 1.09001 * 109.47118 * 300.00430 * 11 10 9 27 27 H 1.09000 * 109.47734 * 59.99910 * 12 11 10 28 28 H 1.09010 * 109.47177 * 299.99940 * 12 11 10 29 29 H 1.07995 * 119.99767 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.96985 * 179.72876 * 16 15 14 31 31 H 1.08001 * 120.03784 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3518 -5.3367 -0.0003 12 6 2.2086 -6.6042 0.0003 13 8 1.3592 -7.7534 -0.0009 14 6 1.9664 -8.9694 -0.0001 15 6 3.3513 -9.0541 0.0077 16 6 3.9678 -10.2904 0.0032 17 6 3.2057 -11.4449 0.0027 18 17 3.9831 -12.9972 0.0044 19 6 1.8224 -11.3635 0.0002 20 9 1.0793 -12.4918 -0.0009 21 6 1.2022 -10.1266 -0.0012 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 0.7229 -5.3232 -0.8905 26 1 0.7223 -5.3237 0.8895 27 1 2.8372 -6.6175 0.8907 28 1 2.8385 -6.6174 -0.8893 29 1 3.9473 -8.1536 0.0127 30 1 5.0458 -10.3556 0.0049 31 1 0.1241 -10.0625 -0.0035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:01 Heat of formation + Delta-G solvation = -91.405355 kcal Electronic energy + Delta-G solvation = -16984.854278 eV Core-core repulsion = 13718.354122 eV Total energy + Delta-G solvation = -3266.500156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.13222 -41.30006 -38.77788 -37.34395 -35.29991 -33.19650 -31.82243 -30.69914 -30.44141 -25.77713 -24.84450 -24.11765 -22.80869 -19.85101 -18.66368 -18.02519 -17.75619 -17.45639 -17.38565 -16.95837 -16.81946 -16.20535 -15.76636 -15.05125 -15.03521 -14.56852 -14.40472 -14.21656 -14.11630 -13.78876 -13.60843 -13.25953 -12.76303 -12.55742 -12.54048 -12.43932 -12.03567 -11.90830 -11.63141 -11.58650 -10.79693 -10.74904 -10.13115 -9.35749 -8.52950 -8.34007 -6.47436 -0.15496 -0.03583 0.65011 0.97444 1.42096 1.42809 1.54876 1.90463 2.11694 2.29311 2.37308 3.01363 3.04374 3.48572 3.74527 3.77050 3.78200 3.99401 4.13997 4.25520 4.52476 4.55445 4.68683 4.79751 4.90155 4.92513 4.93918 5.04701 5.35334 5.56468 5.86346 6.12142 6.60417 7.21181 8.78014 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.056450 B = 0.002279 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.895866 B =12282.885528 C =12753.030321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.091 3.909 10 S -0.280 6.280 11 C -0.089 4.089 12 C 0.087 3.913 13 O -0.317 6.317 14 C 0.160 3.840 15 C -0.202 4.202 16 C -0.032 4.032 17 C -0.122 4.122 18 Cl -0.053 7.053 19 C 0.138 3.862 20 F -0.129 7.129 21 C -0.186 4.186 22 H 0.270 0.730 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.990 -22.543 -0.001 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.084 0.916 9 C -0.056 4.056 10 S -0.054 6.054 11 C -0.238 4.238 12 C 0.011 3.989 13 O -0.230 6.230 14 C 0.113 3.887 15 C -0.221 4.221 16 C -0.051 4.051 17 C -0.150 4.150 18 Cl -0.024 7.024 19 C 0.118 3.882 20 F -0.107 7.107 21 C -0.205 4.205 22 H 0.079 0.921 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.182 0.818 30 H 0.191 0.809 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.758 -22.537 0.004 23.835 hybrid contribution -1.437 0.545 -0.010 1.537 sum 6.320 -21.992 -0.006 22.882 Atomic orbital electron populations 1.70055 1.07734 1.28632 1.50012 1.25921 0.95864 1.03113 0.93799 0.85263 0.78512 0.77442 0.78770 1.19430 1.20271 1.18753 1.20984 0.93586 0.90009 1.52942 0.91592 1.20794 0.94090 0.92445 0.98306 1.86206 1.19720 1.01343 1.98099 1.23103 1.00876 0.93766 1.06005 1.22500 0.91694 0.80488 1.04222 1.86056 1.36993 1.12215 1.87766 1.18813 0.91555 0.84826 0.93519 1.21611 0.92924 1.00077 1.07465 1.21035 1.01762 0.88518 0.93764 1.20989 0.90951 0.89313 1.13736 1.98380 1.80284 1.26523 1.97210 1.17038 0.87364 0.82243 1.01560 1.91538 1.76558 1.49040 1.93585 1.20304 1.02214 0.88178 1.09847 0.92064 0.96469 0.96453 0.89625 0.89629 0.89233 0.89248 0.81808 0.80947 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.37 13.29 21.45 0.28 -53.08 16 2 C 0.01 0.76 5.46 84.65 0.46 1.23 16 3 Si 0.98 42.41 29.54 68.60 2.03 44.44 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.54 -29.57 9.13 25.60 0.23 -29.34 16 8 H 0.07 3.58 7.71 -2.91 -0.02 3.56 16 9 C 0.09 4.65 5.70 71.23 0.41 5.06 16 10 S -0.28 -11.05 21.66 -56.49 -1.22 -12.28 16 11 C -0.09 -2.68 6.31 71.98 0.45 -2.22 16 12 C 0.09 1.95 4.75 71.98 0.34 2.29 16 13 O -0.32 -7.31 10.14 -92.63 -0.94 -8.24 16 14 C 0.16 3.19 6.68 22.50 0.15 3.34 16 15 C -0.20 -3.20 9.04 22.37 0.20 -2.99 16 16 C -0.03 -0.46 9.82 22.27 0.22 -0.24 16 17 C -0.12 -2.17 6.33 22.37 0.14 -2.03 16 18 Cl -0.05 -0.90 28.61 -2.72 -0.08 -0.98 16 19 C 0.14 2.74 7.27 22.38 0.16 2.90 16 20 F -0.13 -2.74 16.83 44.97 0.76 -1.98 16 21 C -0.19 -3.64 9.96 22.41 0.22 -3.42 16 22 H 0.27 14.56 8.31 -92.71 -0.77 13.78 16 23 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.09 1.79 7.65 -2.39 -0.02 1.77 16 28 H 0.09 1.78 7.67 -2.38 -0.02 1.77 16 29 H 0.16 2.04 6.30 -2.91 -0.02 2.02 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -60.27 308.15 4.97 -55.30 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.15 Total: 2.27 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 3.00 Total: -25.44 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.28 Total: -53.08 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.94 Total: -8.24 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.76 Total: -1.98 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -11.05 SS G_CDS: -1.22 Total: -12.28 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -60.27 4.97 -55.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.107 kcal (2) G-P(sol) polarization free energy of solvation -60.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds