Wall clock time and date at job start Tue Mar 31 2020 06:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99756 * 2 1 4 4 H 1.48502 * 109.47324 * 240.00409 * 3 2 1 5 5 H 1.48507 * 109.47470 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47500 * 120.00324 * 3 2 1 7 7 C 1.37875 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99855 * 359.97438 * 7 2 1 10 10 S 1.81407 * 109.46694 * 179.97438 * 9 7 2 11 11 C 1.81408 * 102.99587 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46679 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46977 * 179.97438 * 12 11 10 14 14 C 1.38248 * 120.00383 * 264.95917 * 13 12 11 15 15 C 1.38214 * 120.03768 * 180.02562 * 14 13 12 16 16 C 1.38246 * 120.04281 * 0.03776 * 15 14 13 17 17 C 1.38301 * 119.99844 * 359.97438 * 16 15 14 18 18 Cl 1.73601 * 120.02291 * 179.97438 * 17 16 15 19 19 C 1.38303 * 119.99506 * 85.00458 * 13 12 11 20 20 Cl 1.73600 * 120.02429 * 0.25152 * 19 13 12 21 21 H 0.96999 * 119.99657 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47047 * 60.00468 * 9 7 2 23 23 H 1.08993 * 109.47333 * 299.99786 * 9 7 2 24 24 H 1.08995 * 109.47046 * 60.00431 * 11 10 9 25 25 H 1.08997 * 109.46904 * 299.99976 * 11 10 9 26 26 H 1.08999 * 109.47423 * 60.00276 * 12 11 10 27 27 H 1.09002 * 109.47915 * 299.99823 * 12 11 10 28 28 H 1.07999 * 119.97698 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.97855 * 180.02562 * 15 14 13 30 30 H 1.08002 * 120.00635 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4300 -3.8779 -0.0021 11 6 1.3517 -5.3367 -0.0011 12 6 2.2086 -6.6041 -0.0029 13 6 1.3128 -7.8161 -0.0014 14 6 0.9887 -8.4347 1.1916 15 6 0.1677 -9.5466 1.1937 16 6 -0.3298 -10.0418 0.0027 17 6 -0.0064 -9.4244 -1.1918 18 17 -0.6302 -10.0461 -2.6877 19 6 0.8158 -8.3099 -1.1939 20 17 1.2286 -7.5381 -2.6931 21 1 -0.4849 0.8401 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6249 -2.5571 0.8896 24 1 0.7216 -5.3233 -0.8904 25 1 0.7236 -5.3235 0.8896 26 1 2.8391 -6.6178 0.8862 27 1 2.8365 -6.6171 -0.8938 28 1 1.3773 -8.0490 2.1225 29 1 -0.0852 -10.0289 2.1264 30 1 -0.9716 -10.9105 0.0051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:24 Heat of formation + Delta-G solvation = -12.261916 kcal Electronic energy + Delta-G solvation = -15366.401450 eV Core-core repulsion = 12531.669586 eV Total energy + Delta-G solvation = -2834.731864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83051 -36.83120 -36.59483 -34.19137 -33.13111 -30.84325 -29.56814 -28.51198 -24.41613 -23.04170 -22.92877 -21.24680 -17.44026 -16.49720 -16.40670 -15.99850 -15.34491 -14.63820 -14.43848 -14.23301 -14.11021 -13.75972 -12.70095 -12.51363 -12.33998 -12.29965 -12.02615 -11.93437 -11.84010 -11.51507 -11.15602 -11.05693 -10.85886 -10.77894 -10.65184 -9.91171 -9.58230 -8.99420 -8.93118 -8.85995 -8.59818 -6.68250 -6.18014 -4.22297 0.72717 0.81302 1.66540 2.06878 2.62937 3.20889 3.29053 3.32121 3.36486 3.87873 4.34821 4.37576 4.55159 4.84843 4.88173 4.98936 5.18981 5.23451 5.29404 5.39129 5.67059 5.76156 5.82838 5.97108 6.21304 6.22248 6.36247 7.11045 7.13229 7.76186 8.02596 8.79264 9.40612 10.93287 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.003306 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.764105 B = 8467.271401 C = 8820.177199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.093 3.907 10 S -0.307 6.307 11 C -0.082 4.082 12 C -0.067 4.067 13 C -0.051 4.051 14 C -0.100 4.100 15 C -0.102 4.102 16 C -0.108 4.108 17 C -0.030 4.030 18 Cl -0.054 7.054 19 C -0.031 4.031 20 Cl -0.039 7.039 21 H 0.266 0.734 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 -22.002 0.169 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.085 0.915 9 C -0.053 4.053 10 S -0.080 6.080 11 C -0.231 4.231 12 C -0.105 4.105 13 C -0.054 4.054 14 C -0.118 4.118 15 C -0.120 4.120 16 C -0.127 4.127 17 C -0.058 4.058 18 Cl -0.025 7.025 19 C -0.059 4.059 20 Cl -0.010 7.010 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.017 -21.818 -0.116 21.818 hybrid contribution -1.132 0.844 -0.280 1.440 sum -1.115 -20.974 -0.396 21.007 Atomic orbital electron populations 1.69952 1.06144 1.27419 1.49643 1.24967 0.94969 0.99264 0.94669 0.86411 0.79398 0.81874 0.78963 1.19900 1.21071 1.19899 1.20651 0.93441 0.88770 1.52326 0.91502 1.21025 0.93560 0.90727 1.00036 1.86559 1.21238 1.02120 1.98074 1.23130 1.00386 0.95150 1.04415 1.20445 0.96188 0.88896 1.04958 1.19862 0.97722 0.96961 0.90872 1.21222 0.97642 0.95306 0.97629 1.21206 0.96770 0.96204 0.97867 1.21015 1.00868 1.00606 0.90223 1.20783 0.99966 0.96196 0.88805 1.98388 1.85726 1.86324 1.32027 1.20754 1.00648 0.95411 0.89047 1.98412 1.92030 1.79997 1.30529 0.92463 0.94647 0.94673 0.90656 0.90864 0.89433 0.89259 0.84196 0.84416 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.51 -14.57 9.13 -34.44 -0.31 -14.88 16 8 H 0.07 1.89 7.71 -52.49 -0.40 1.49 16 9 C 0.09 2.45 5.70 36.00 0.21 2.66 16 10 S -0.31 -6.63 21.66 -107.50 -2.33 -8.96 16 11 C -0.08 -1.39 5.92 37.15 0.22 -1.17 16 12 C -0.07 -0.90 4.87 -27.88 -0.14 -1.03 16 13 C -0.05 -0.61 5.14 -104.59 -0.54 -1.15 16 14 C -0.10 -0.96 9.68 -39.59 -0.38 -1.34 16 15 C -0.10 -0.83 10.04 -39.59 -0.40 -1.23 16 16 C -0.11 -0.96 9.83 -39.56 -0.39 -1.35 16 17 C -0.03 -0.33 6.32 -39.46 -0.25 -0.58 16 18 Cl -0.05 -0.58 27.96 -51.86 -1.45 -2.03 16 19 C -0.03 -0.38 6.32 -39.46 -0.25 -0.63 16 20 Cl -0.04 -0.52 26.18 -51.86 -1.36 -1.88 16 21 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 22 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 23 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.07 1.31 7.92 -51.93 -0.41 0.90 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 27 H 0.09 1.25 7.12 -51.93 -0.37 0.88 16 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 306.06 15.07 4.61 4.61 Total: -1.00 -29.73 306.06 -10.41 -40.14 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -3.28 Total: -3.92 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -2.33 Total: -18.97 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.74 Total: -25.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -6.63 SS G_CDS: -2.33 Total: -8.96 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -2.81 Total: -3.91 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.73 -10.41 -40.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.879 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds