Wall clock time and date at job start Tue Mar 31 2020 06:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99756 * 2 1 4 4 H 1.48502 * 109.47324 * 240.00409 * 3 2 1 5 5 H 1.48507 * 109.47470 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47500 * 120.00324 * 3 2 1 7 7 C 1.37875 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99855 * 359.97438 * 7 2 1 10 10 S 1.81407 * 109.46694 * 179.97438 * 9 7 2 11 11 C 1.81408 * 102.99587 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46679 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46977 * 179.97438 * 12 11 10 14 14 C 1.38248 * 120.00383 * 264.95917 * 13 12 11 15 15 C 1.38214 * 120.03768 * 180.02562 * 14 13 12 16 16 C 1.38246 * 120.04281 * 0.03776 * 15 14 13 17 17 C 1.38301 * 119.99844 * 359.97438 * 16 15 14 18 18 Cl 1.73601 * 120.02291 * 179.97438 * 17 16 15 19 19 C 1.38303 * 119.99506 * 85.00458 * 13 12 11 20 20 Cl 1.73600 * 120.02429 * 0.25152 * 19 13 12 21 21 H 0.96999 * 119.99657 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47047 * 60.00468 * 9 7 2 23 23 H 1.08993 * 109.47333 * 299.99786 * 9 7 2 24 24 H 1.08995 * 109.47046 * 60.00431 * 11 10 9 25 25 H 1.08997 * 109.46904 * 299.99976 * 11 10 9 26 26 H 1.08999 * 109.47423 * 60.00276 * 12 11 10 27 27 H 1.09002 * 109.47915 * 299.99823 * 12 11 10 28 28 H 1.07999 * 119.97698 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.97855 * 180.02562 * 15 14 13 30 30 H 1.08002 * 120.00635 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4300 -3.8779 -0.0021 11 6 1.3517 -5.3367 -0.0011 12 6 2.2086 -6.6041 -0.0029 13 6 1.3128 -7.8161 -0.0014 14 6 0.9887 -8.4347 1.1916 15 6 0.1677 -9.5466 1.1937 16 6 -0.3298 -10.0418 0.0027 17 6 -0.0064 -9.4244 -1.1918 18 17 -0.6302 -10.0461 -2.6877 19 6 0.8158 -8.3099 -1.1939 20 17 1.2286 -7.5381 -2.6931 21 1 -0.4849 0.8401 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6249 -2.5571 0.8896 24 1 0.7216 -5.3233 -0.8904 25 1 0.7236 -5.3235 0.8896 26 1 2.8391 -6.6178 0.8862 27 1 2.8365 -6.6171 -0.8938 28 1 1.3773 -8.0490 2.1225 29 1 -0.0852 -10.0289 2.1264 30 1 -0.9716 -10.9105 0.0051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413016548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:24 Heat of formation + Delta-G solvation = -26.333116 kcal Electronic energy + Delta-G solvation = -15367.011623 eV Core-core repulsion = 12531.669586 eV Total energy + Delta-G solvation = -2835.342037 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 289.999 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63739 -37.65542 -37.52960 -35.30611 -35.19787 -31.61294 -30.73267 -30.51176 -25.78185 -24.75643 -23.81260 -22.22271 -18.64387 -18.24842 -17.29389 -17.21570 -16.79409 -16.30657 -15.47434 -15.21434 -15.10995 -15.01070 -14.51611 -14.24327 -13.92143 -13.68166 -13.00785 -12.95366 -12.85770 -12.72360 -12.54509 -12.33164 -12.14663 -12.11063 -11.87005 -11.74177 -11.44463 -10.74419 -10.71774 -9.83865 -9.74917 -8.47619 -8.33453 -6.47118 -0.05475 0.01230 0.79925 1.02388 1.21822 1.40323 1.43536 1.52436 2.01554 2.36847 2.43539 3.01059 3.51718 3.75294 3.99565 4.02989 4.10052 4.22730 4.30655 4.45849 4.60885 4.79045 4.92975 4.93539 4.99088 5.02833 5.21568 5.33948 5.56469 5.64408 5.87933 6.60276 7.21080 8.78486 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.003306 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.764105 B = 8467.271401 C = 8820.177199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.093 3.907 10 S -0.308 6.308 11 C -0.067 4.067 12 C -0.057 4.057 13 C -0.068 4.068 14 C -0.098 4.098 15 C -0.090 4.090 16 C -0.101 4.101 17 C -0.045 4.045 18 Cl -0.058 7.058 19 C -0.048 4.048 20 Cl -0.061 7.061 21 H 0.270 0.730 22 H 0.009 0.991 23 H 0.015 0.985 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.161 0.839 29 H 0.176 0.824 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -23.235 1.577 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.082 0.918 9 C -0.054 4.054 10 S -0.081 6.081 11 C -0.215 4.215 12 C -0.095 4.095 13 C -0.071 4.071 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.120 4.120 17 C -0.072 4.072 18 Cl -0.029 7.029 19 C -0.076 4.076 20 Cl -0.032 7.032 21 H 0.079 0.921 22 H 0.028 0.972 23 H 0.033 0.967 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.178 0.822 29 H 0.193 0.807 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.302 -23.060 1.291 23.099 hybrid contribution -1.283 1.052 -0.675 1.791 sum -0.981 -22.008 0.616 22.039 Atomic orbital electron populations 1.70063 1.07751 1.28641 1.50043 1.25938 0.95878 1.03122 0.93733 0.85318 0.78201 0.77091 0.79384 1.19188 1.20115 1.18878 1.20984 0.93490 0.90190 1.52971 0.91828 1.20715 0.94078 0.92906 0.97738 1.86326 1.21120 1.02583 1.98027 1.23199 0.99964 0.94060 1.04320 1.20302 0.96014 0.87888 1.05273 1.19743 0.98631 0.96957 0.91757 1.21537 0.97292 0.95408 0.97354 1.21638 0.95023 0.95151 0.99014 1.21424 1.00261 1.00792 0.89530 1.20987 1.00318 0.96314 0.89590 1.98384 1.85716 1.86245 1.32514 1.20916 1.01927 0.96324 0.88422 1.98398 1.92308 1.80509 1.31988 0.92076 0.97233 0.96668 0.91574 0.90116 0.87992 0.90123 0.82164 0.80678 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 2 C 0.01 0.80 5.46 84.65 0.46 1.26 16 3 Si 0.98 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -31.20 9.13 25.60 0.23 -30.96 16 8 H 0.06 3.65 7.71 -2.91 -0.02 3.62 16 9 C 0.09 5.07 5.70 71.24 0.41 5.47 16 10 S -0.31 -13.47 21.66 -56.49 -1.22 -14.69 16 11 C -0.07 -2.24 5.92 71.98 0.43 -1.82 16 12 C -0.06 -1.47 4.87 29.85 0.15 -1.32 16 13 C -0.07 -1.52 5.14 -19.85 -0.10 -1.62 16 14 C -0.10 -1.57 9.68 22.27 0.22 -1.35 16 15 C -0.09 -1.10 10.04 22.27 0.22 -0.87 16 16 C -0.10 -1.48 9.83 22.29 0.22 -1.26 16 17 C -0.04 -0.92 6.32 22.35 0.14 -0.78 16 18 Cl -0.06 -1.19 27.96 -2.72 -0.08 -1.27 16 19 C -0.05 -1.16 6.32 22.35 0.14 -1.02 16 20 Cl -0.06 -1.67 26.18 -2.72 -0.07 -1.74 16 21 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 22 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 2.35 7.92 -2.39 -0.02 2.33 16 25 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.10 2.33 8.05 -2.39 -0.02 2.31 16 27 H 0.08 2.23 7.12 -2.39 -0.02 2.22 16 28 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -65.50 306.06 4.60 -60.91 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: 1.14 Total: -0.03 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 2.51 Total: -34.28 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.28 Total: -54.91 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -13.47 SS G_CDS: -1.22 Total: -14.69 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -0.15 Total: -3.01 kcal Total: -65.50 4.60 -60.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.574 kcal (2) G-P(sol) polarization free energy of solvation -65.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds