Wall clock time and date at job start Tue Mar 31 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35014 * 126.03123 * 2 1 4 4 C 1.35371 * 107.72793 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 126.04185 * 179.97438 * 4 3 2 6 6 C 1.39918 * 107.90799 * 0.02562 * 4 3 2 7 7 C 1.50698 * 125.89003 * 179.97438 * 6 4 3 8 8 S 1.81401 * 109.47003 * 90.00104 * 7 6 4 9 9 C 1.81408 * 103.00050 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46852 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00137 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99857 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99898 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00195 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47074 * 89.99930 * 14 12 10 16 16 H 1.48496 * 109.47212 * 209.99797 * 14 12 10 17 17 H 1.48501 * 109.47257 * 330.00496 * 14 12 10 18 18 N 1.30837 * 108.20884 * 359.75425 * 6 4 3 19 19 H 1.09001 * 109.47060 * 90.00473 * 1 2 3 20 20 H 1.09004 * 109.47073 * 209.99961 * 1 2 3 21 21 H 1.09000 * 109.47212 * 330.00044 * 1 2 3 22 22 H 1.07991 * 126.13813 * 359.94167 * 3 2 1 23 23 H 1.08998 * 109.47057 * 209.99971 * 7 6 4 24 24 H 1.09000 * 109.47628 * 330.00305 * 7 6 4 25 25 H 1.08991 * 109.46963 * 299.99890 * 9 8 7 26 26 H 1.09002 * 109.46880 * 60.00173 * 9 8 7 27 27 H 0.96998 * 120.00293 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2592 1.0919 0.0000 4 6 3.5445 0.6667 0.0006 5 35 5.0810 1.7690 0.0002 6 6 3.5348 -0.7324 0.0003 7 6 4.7496 -1.6243 0.0003 8 16 5.2368 -1.9824 1.7105 9 6 6.6894 -3.0497 1.5060 10 6 7.2209 -3.4396 2.8612 11 1 6.7335 -3.0816 3.7559 12 6 8.3290 -4.2544 2.9587 13 7 8.9222 -4.6908 1.8692 14 14 8.9884 -4.7371 4.6385 15 1 8.3336 -5.9929 5.0850 16 1 10.4558 -4.9475 4.5524 17 1 8.6997 -3.6547 5.6134 18 7 2.2892 -1.1327 0.0050 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.9286 2.1199 -0.0009 23 1 4.5158 -2.5566 -0.5137 24 1 5.5692 -1.1219 -0.5134 25 1 6.4066 -3.9463 0.9545 26 1 7.4606 -2.5120 0.9545 27 1 9.7019 -5.2637 1.9377 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017398.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:25 Heat of formation + Delta-G solvation = 50.791829 kcal Electronic energy + Delta-G solvation = -12788.918453 eV Core-core repulsion = 10334.076705 eV Total energy + Delta-G solvation = -2454.841748 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.35395 -35.28269 -35.15275 -32.72540 -30.97641 -30.60354 -29.86323 -26.35203 -25.09854 -22.17979 -21.15353 -18.66193 -17.92739 -17.18229 -16.76202 -16.17284 -15.68208 -15.09850 -14.73338 -14.60400 -14.44892 -14.10667 -13.64423 -13.51468 -13.27251 -12.72694 -12.56281 -12.13681 -12.03304 -11.88173 -11.60494 -11.03946 -10.78233 -10.72929 -10.31355 -9.41767 -8.45374 -8.31430 -6.44470 0.38970 0.71867 0.86197 1.40799 1.42532 1.54162 1.61470 1.77254 2.01914 2.38520 3.03061 3.36394 3.56741 3.96012 4.12254 4.39418 4.43395 4.45948 4.69024 4.73569 4.96450 4.97688 5.11966 5.58688 5.90008 5.90331 6.43460 6.62284 7.23024 8.80718 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.004680 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.727233 B = 5981.449234 C = 6757.775828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.361 5.361 3 C 0.111 3.889 4 C -0.254 4.254 5 Br -0.017 7.017 6 C 0.109 3.891 7 C -0.008 4.008 8 S -0.281 6.281 9 C 0.092 3.908 10 C -0.535 4.535 11 H 0.061 0.939 12 C 0.015 3.985 13 N -0.925 5.925 14 Si 0.976 3.024 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.266 1.266 18 N -0.307 5.307 19 H 0.098 0.902 20 H 0.089 0.911 21 H 0.127 0.873 22 H 0.230 0.770 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.015 0.985 26 H 0.019 0.981 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.048 15.907 -6.383 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.142 5.142 3 C -0.039 4.039 4 C -0.346 4.346 5 Br 0.066 6.934 6 C -0.058 4.058 7 C -0.158 4.158 8 S -0.055 6.055 9 C -0.055 4.055 10 C -0.574 4.574 11 H 0.079 0.921 12 C -0.185 4.185 13 N -0.563 5.563 14 Si 0.799 3.201 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.190 1.190 18 N -0.131 5.131 19 H 0.116 0.884 20 H 0.108 0.892 21 H 0.145 0.855 22 H 0.247 0.753 23 H 0.108 0.892 24 H 0.119 0.881 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.821 15.531 -5.540 23.556 hybrid contribution 1.373 -0.563 -0.596 1.599 sum -15.449 14.968 -6.136 22.369 Atomic orbital electron populations 1.22422 0.70328 1.06634 1.05495 1.48926 1.08389 1.02696 1.54227 1.23001 0.88147 0.95498 0.97280 1.21874 0.94186 0.93064 1.25461 1.96602 1.34677 1.63712 1.98385 1.21256 0.92506 0.92458 0.99555 1.21466 0.95737 1.00859 0.97704 1.86617 1.41034 1.67224 1.10650 1.20784 0.90618 0.94005 1.00129 1.20953 1.13303 1.31513 0.91603 0.92063 1.25899 0.96054 0.95018 1.01564 1.70059 1.21620 1.34638 1.30007 0.85277 0.77576 0.78879 0.78321 1.19431 1.19902 1.18994 1.77407 1.00797 1.09423 1.25499 0.88406 0.89184 0.85465 0.75323 0.89207 0.88064 0.96647 0.96248 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.47 127.77 1.47 2.37 15 2 N -0.36 -7.90 4.01 -369.45 -1.48 -9.38 15 3 C 0.11 2.24 11.46 83.54 0.96 3.20 15 4 C -0.25 -7.18 6.52 22.01 0.14 -7.04 15 5 Br -0.02 -0.46 33.62 -20.37 -0.68 -1.14 15 6 C 0.11 3.73 6.48 43.11 0.28 4.01 15 7 C -0.01 -0.32 6.33 71.24 0.45 0.14 15 8 S -0.28 -13.19 21.64 -56.49 -1.22 -14.42 15 9 C 0.09 5.10 5.70 71.24 0.41 5.51 15 10 C -0.53 -31.48 9.13 25.60 0.23 -31.25 15 11 H 0.06 3.60 7.71 -2.91 -0.02 3.57 15 12 C 0.02 0.89 5.46 84.65 0.46 1.35 15 13 N -0.92 -55.32 13.29 21.45 0.28 -55.03 15 14 Si 0.98 44.58 29.54 68.60 2.03 46.61 15 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 18 N -0.31 -9.93 12.57 -47.36 -0.60 -10.53 15 19 H 0.10 0.64 8.14 -2.39 -0.02 0.62 15 20 H 0.09 1.02 8.14 -2.38 -0.02 1.00 15 21 H 0.13 0.36 8.14 -2.39 -0.02 0.34 15 22 H 0.23 2.21 8.06 -2.91 -0.02 2.19 15 23 H 0.09 3.41 8.14 -2.39 -0.02 3.39 15 24 H 0.10 3.74 7.87 -2.39 -0.02 3.72 15 25 H 0.02 0.89 8.14 -2.40 -0.02 0.87 15 26 H 0.02 1.11 8.14 -2.39 -0.02 1.09 15 27 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 Total: -1.00 -71.95 279.33 3.89 -68.05 By element: Atomic # 1 Polarization: -3.62 SS G_CDS: 1.17 Total: -2.46 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 4.40 Total: -21.71 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.79 Total: -74.94 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -13.19 SS G_CDS: -1.22 Total: -14.42 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -0.68 Total: -1.14 kcal Total: -71.95 3.89 -68.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017398.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.846 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds