Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 N 1.46905 * 109.46949 * 240.00236 * 2 1 3 5 5 C 1.46897 * 110.99804 * 84.99715 * 4 2 1 6 6 C 1.53000 * 109.46867 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47452 * 299.99942 * 6 5 4 8 8 C 1.52992 * 109.47471 * 60.00451 * 6 5 4 9 9 C 1.50698 * 109.47135 * 180.02562 * 6 5 4 10 10 H 1.08001 * 120.00333 * 0.02562 * 9 6 5 11 11 C 1.37884 * 120.00265 * 179.97438 * 9 6 5 12 12 N 1.31515 * 119.99888 * 0.02562 * 11 9 6 13 13 Si 1.86796 * 120.00253 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.46981 * 60.00133 * 13 11 9 15 15 H 1.48494 * 109.47278 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47222 * 300.00507 * 13 11 9 17 17 C 1.52997 * 109.47321 * 120.00288 * 2 1 3 18 18 C 1.52999 * 109.46956 * 65.18908 * 17 2 1 19 19 C 1.53004 * 109.46959 * 305.18904 * 17 2 1 20 20 C 1.50702 * 109.46973 * 185.19049 * 17 2 1 21 21 C 1.38237 * 119.99564 * 186.14770 * 20 17 2 22 22 C 1.38240 * 119.99969 * 180.02562 * 21 20 17 23 23 C 1.38237 * 119.99556 * 359.97438 * 22 21 20 24 24 C 1.38236 * 120.00378 * 0.25108 * 23 22 21 25 25 C 1.38228 * 120.00162 * 6.16026 * 20 17 2 26 26 H 1.08996 * 109.47298 * 185.48684 * 1 2 3 27 27 H 1.09001 * 109.46564 * 305.48484 * 1 2 3 28 28 H 1.08998 * 109.47274 * 65.48126 * 1 2 3 29 29 H 1.00897 * 110.99823 * 321.04782 * 4 2 1 30 30 H 1.08996 * 109.47852 * 300.00153 * 5 4 2 31 31 H 1.09005 * 109.47367 * 60.00769 * 5 4 2 32 32 H 1.09005 * 109.47114 * 59.99789 * 7 6 5 33 33 H 1.08997 * 109.47698 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47452 * 300.00643 * 7 6 5 35 35 H 1.08997 * 109.47298 * 59.99291 * 8 6 5 36 36 H 1.08997 * 109.47452 * 180.02562 * 8 6 5 37 37 H 1.09009 * 109.46815 * 299.99910 * 8 6 5 38 38 H 0.96994 * 120.00048 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.46981 * 180.02562 * 18 17 2 40 40 H 1.09001 * 109.47391 * 299.99903 * 18 17 2 41 41 H 1.08998 * 109.47405 * 60.00470 * 18 17 2 42 42 H 1.08996 * 109.47058 * 300.00160 * 19 17 2 43 43 H 1.09001 * 109.47145 * 60.00246 * 19 17 2 44 44 H 1.09000 * 109.46621 * 179.97438 * 19 17 2 45 45 H 1.07996 * 120.00186 * 359.97438 * 21 20 17 46 46 H 1.07993 * 119.99893 * 179.97438 * 22 21 20 47 47 H 1.08000 * 119.99858 * 179.97438 * 23 22 21 48 48 H 1.08000 * 120.00175 * 179.72721 * 24 23 22 49 49 H 1.07994 * 119.99978 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5949 -0.5331 -3.5745 7 6 3.9920 -1.0862 -3.2864 8 6 1.6450 -1.6887 -3.8954 9 6 2.6598 0.4058 -4.7515 10 1 2.3654 1.4385 -4.6354 11 6 3.0961 -0.0531 -5.9763 12 7 3.4551 -1.3104 -6.1176 13 14 3.1759 1.1106 -7.4354 14 1 4.0974 2.2327 -7.1238 15 1 3.6734 0.3771 -8.6268 16 1 1.8197 1.6470 -7.7155 17 6 2.0400 -0.7213 1.2492 18 6 1.6394 -2.1965 1.1855 19 6 1.4263 -0.0793 2.4950 20 6 3.5416 -0.6109 1.3150 21 6 4.2427 -1.2949 2.2905 22 6 5.6200 -1.1933 2.3513 23 6 6.2961 -0.4081 1.4363 24 6 5.5946 0.2797 0.4638 25 6 4.2177 0.1745 0.4003 26 1 -0.3634 -1.0229 0.0983 27 1 -0.3632 0.5966 0.8368 28 1 -0.3634 0.4265 -0.9350 29 1 1.4495 -1.4978 -1.4101 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1183 32 1 3.9455 -1.7652 -2.4350 33 1 4.3569 -1.6250 -4.1608 34 1 4.6687 -0.2629 -3.0579 35 1 0.6497 -1.2947 -4.1006 36 1 2.0104 -2.2274 -4.7697 37 1 1.5984 -2.3678 -3.0439 38 1 3.7616 -1.6333 -6.9793 39 1 2.0023 -2.7103 2.0757 40 1 0.5533 -2.2763 1.1379 41 1 2.0766 -2.6539 0.2980 42 1 1.7117 0.9716 2.5403 43 1 0.3403 -0.1592 2.4474 44 1 1.7893 -0.5935 3.3849 45 1 3.7144 -1.9081 3.0055 46 1 6.1677 -1.7274 3.1136 47 1 7.3721 -0.3283 1.4841 48 1 6.1225 0.8967 -0.2483 49 1 3.6698 0.7094 -0.3613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414158401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = 13.263773 kcal Electronic energy + Delta-G solvation = -24688.586649 eV Core-core repulsion = 21614.983516 eV Total energy + Delta-G solvation = -3073.603133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92635 -37.52267 -35.93469 -33.17267 -31.08553 -30.52137 -29.71054 -28.03783 -27.06730 -25.52434 -25.18989 -24.62280 -23.16203 -22.17710 -21.15490 -18.61182 -18.36896 -16.86773 -15.85307 -15.22954 -14.82044 -14.69636 -14.60198 -14.30908 -13.89817 -13.69194 -13.31970 -12.94304 -12.93948 -12.57690 -12.25672 -12.11378 -12.06266 -11.84842 -11.74638 -11.47897 -11.18122 -11.11068 -11.03368 -10.95699 -10.71194 -10.65103 -10.58166 -10.29254 -10.11539 -10.04502 -9.97399 -9.33697 -9.00433 -8.60036 -8.52484 -8.32335 -8.25171 -7.57524 -5.88470 -3.98838 1.72704 1.80587 3.33577 3.38628 3.41082 4.16179 4.45046 4.70664 4.78663 4.97841 5.27687 5.30441 5.36836 5.37436 5.44571 5.46711 5.48360 5.57470 5.72639 5.78947 5.87663 5.91991 5.97741 6.01182 6.08541 6.17743 6.21096 6.32858 6.37180 6.41204 6.44616 6.52201 6.60721 6.75504 6.80677 6.91025 6.96534 7.08470 7.12480 7.20444 7.39188 7.44850 7.53599 7.79127 7.79587 7.88404 8.04724 8.25141 8.39238 8.59166 9.02678 9.66005 11.11774 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.004864 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.641533 B = 5755.191996 C = 6576.754299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.074 0.926 4 N -0.675 5.675 5 C 0.075 3.925 6 C 0.071 3.929 7 C -0.115 4.115 8 C -0.131 4.131 9 C -0.506 4.506 10 H 0.050 0.950 11 C 0.066 3.934 12 N -0.884 5.884 13 Si 0.887 3.113 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.280 1.280 17 C -0.012 4.012 18 C -0.138 4.138 19 C -0.140 4.140 20 C -0.053 4.053 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.085 4.085 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.338 0.662 30 H 0.012 0.988 31 H 0.053 0.947 32 H 0.020 0.980 33 H 0.071 0.929 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.082 0.918 37 H 0.010 0.990 38 H 0.258 0.742 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.116 0.884 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 0.175 16.664 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.023 4.023 3 H 0.092 0.908 4 N -0.306 5.306 5 C -0.053 4.053 6 C 0.071 3.929 7 C -0.173 4.173 8 C -0.189 4.189 9 C -0.545 4.545 10 H 0.068 0.932 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.205 1.205 17 C -0.013 4.013 18 C -0.195 4.195 19 C -0.198 4.198 20 C -0.053 4.053 21 C -0.142 4.142 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.102 4.102 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.158 0.842 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.090 0.910 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.100 0.900 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.134 0.866 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.873 0.125 16.662 16.686 hybrid contribution -0.835 0.740 -1.161 1.610 sum -1.708 0.865 15.501 15.619 Atomic orbital electron populations 1.22607 0.97953 1.01971 1.01813 1.21564 0.91920 0.97699 0.91069 0.90801 1.60774 1.56256 1.09947 1.03666 1.22163 0.97620 0.94809 0.90715 1.18055 0.92526 0.92523 0.89839 1.21599 0.97582 0.98546 0.99571 1.21820 0.97741 0.98798 1.00510 1.21074 1.43535 0.95771 0.94135 0.93201 1.24872 0.95275 0.94939 0.98404 1.69826 1.44575 1.13932 1.23957 0.86755 0.78231 0.81137 0.82370 1.20446 1.21405 1.20539 1.19470 0.91097 0.96160 0.94530 1.21889 1.00616 0.94707 1.02328 1.21951 1.00503 1.00572 0.96732 1.19611 0.94536 0.96368 0.94747 1.20883 0.94006 1.00295 0.98981 1.20955 0.94403 1.00033 0.99514 1.21036 0.99286 0.98326 0.96221 1.21186 0.94777 0.99855 0.98174 1.21337 0.93875 0.97750 0.97285 0.92361 0.92528 0.92583 0.84188 0.96955 0.92853 0.96071 0.91012 0.96473 0.96369 0.89965 0.97107 0.93197 0.93224 0.92839 0.91163 0.92788 0.92230 0.92758 0.87006 0.87039 0.87006 0.86589 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 8.38 37.16 0.31 -1.98 16 2 C 0.09 1.22 1.21 -67.71 -0.08 1.13 16 3 H 0.07 1.08 6.53 -51.93 -0.34 0.74 16 4 N -0.68 -11.20 3.51 -106.73 -0.37 -11.57 16 5 C 0.08 1.50 4.09 -3.83 -0.02 1.48 16 6 C 0.07 1.68 0.57 -155.67 -0.09 1.59 16 7 C -0.12 -2.78 8.09 37.16 0.30 -2.48 16 8 C -0.13 -3.06 7.92 37.15 0.29 -2.76 16 9 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 10 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 11 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 12 N -0.88 -24.47 9.35 55.43 0.52 -23.95 16 13 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.01 -0.15 0.46 -155.66 -0.07 -0.22 16 18 C -0.14 -1.66 7.60 37.16 0.28 -1.38 16 19 C -0.14 -1.48 7.85 37.16 0.29 -1.18 16 20 C -0.05 -0.74 4.64 -104.63 -0.49 -1.22 16 21 C -0.12 -1.61 8.77 -39.58 -0.35 -1.96 16 22 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 23 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 24 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 25 C -0.08 -1.32 8.51 -39.58 -0.34 -1.66 16 26 H 0.06 0.69 6.33 -51.93 -0.33 0.36 16 27 H 0.06 0.61 6.68 -51.93 -0.35 0.27 16 28 H 0.06 0.77 7.35 -51.93 -0.38 0.39 16 29 H 0.34 5.73 5.73 -39.29 -0.23 5.51 16 30 H 0.01 0.25 7.36 -51.93 -0.38 -0.13 16 31 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 32 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 33 H 0.07 1.92 6.07 -51.93 -0.32 1.61 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 37 H 0.01 0.21 6.57 -51.92 -0.34 -0.13 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.05 0.54 7.07 -51.93 -0.37 0.18 16 40 H 0.05 0.59 6.46 -51.93 -0.34 0.25 16 41 H 0.07 0.98 7.13 -51.93 -0.37 0.61 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.57 6.47 -51.93 -0.34 0.23 16 44 H 0.05 0.53 7.78 -51.93 -0.40 0.13 16 45 H 0.11 1.26 7.11 -52.49 -0.37 0.88 16 46 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 49 H 0.13 2.23 4.01 -52.49 -0.21 2.02 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -26.92 359.02 -9.18 -36.09 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.20 Total: 7.07 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -1.51 Total: -29.15 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.14 Total: -35.52 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.92 -9.18 -36.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414158401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.359 kcal (2) G-P(sol) polarization free energy of solvation -26.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds