Wall clock time and date at job start Tue Mar 31 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 N 1.46905 * 109.46949 * 240.00236 * 2 1 3 5 5 C 1.46897 * 110.99804 * 84.99715 * 4 2 1 6 6 C 1.53000 * 109.46867 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47452 * 299.99942 * 6 5 4 8 8 C 1.52992 * 109.47471 * 60.00451 * 6 5 4 9 9 C 1.50698 * 109.47135 * 180.02562 * 6 5 4 10 10 H 1.08001 * 120.00333 * 0.02562 * 9 6 5 11 11 C 1.37884 * 120.00265 * 179.97438 * 9 6 5 12 12 N 1.31515 * 119.99888 * 0.02562 * 11 9 6 13 13 Si 1.86796 * 120.00253 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.46981 * 60.00133 * 13 11 9 15 15 H 1.48494 * 109.47278 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47222 * 300.00507 * 13 11 9 17 17 C 1.52997 * 109.47321 * 120.00288 * 2 1 3 18 18 C 1.52999 * 109.46956 * 65.18908 * 17 2 1 19 19 C 1.53004 * 109.46959 * 305.18904 * 17 2 1 20 20 C 1.50702 * 109.46973 * 185.19049 * 17 2 1 21 21 C 1.38237 * 119.99564 * 186.14770 * 20 17 2 22 22 C 1.38240 * 119.99969 * 180.02562 * 21 20 17 23 23 C 1.38237 * 119.99556 * 359.97438 * 22 21 20 24 24 C 1.38236 * 120.00378 * 0.25108 * 23 22 21 25 25 C 1.38228 * 120.00162 * 6.16026 * 20 17 2 26 26 H 1.08996 * 109.47298 * 185.48684 * 1 2 3 27 27 H 1.09001 * 109.46564 * 305.48484 * 1 2 3 28 28 H 1.08998 * 109.47274 * 65.48126 * 1 2 3 29 29 H 1.00897 * 110.99823 * 321.04782 * 4 2 1 30 30 H 1.08996 * 109.47852 * 300.00153 * 5 4 2 31 31 H 1.09005 * 109.47367 * 60.00769 * 5 4 2 32 32 H 1.09005 * 109.47114 * 59.99789 * 7 6 5 33 33 H 1.08997 * 109.47698 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47452 * 300.00643 * 7 6 5 35 35 H 1.08997 * 109.47298 * 59.99291 * 8 6 5 36 36 H 1.08997 * 109.47452 * 180.02562 * 8 6 5 37 37 H 1.09009 * 109.46815 * 299.99910 * 8 6 5 38 38 H 0.96994 * 120.00048 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.46981 * 180.02562 * 18 17 2 40 40 H 1.09001 * 109.47391 * 299.99903 * 18 17 2 41 41 H 1.08998 * 109.47405 * 60.00470 * 18 17 2 42 42 H 1.08996 * 109.47058 * 300.00160 * 19 17 2 43 43 H 1.09001 * 109.47145 * 60.00246 * 19 17 2 44 44 H 1.09000 * 109.46621 * 179.97438 * 19 17 2 45 45 H 1.07996 * 120.00186 * 359.97438 * 21 20 17 46 46 H 1.07993 * 119.99893 * 179.97438 * 22 21 20 47 47 H 1.08000 * 119.99858 * 179.97438 * 23 22 21 48 48 H 1.08000 * 120.00175 * 179.72721 * 24 23 22 49 49 H 1.07994 * 119.99978 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5949 -0.5331 -3.5745 7 6 3.9920 -1.0862 -3.2864 8 6 1.6450 -1.6887 -3.8954 9 6 2.6598 0.4058 -4.7515 10 1 2.3654 1.4385 -4.6354 11 6 3.0961 -0.0531 -5.9763 12 7 3.4551 -1.3104 -6.1176 13 14 3.1759 1.1106 -7.4354 14 1 4.0974 2.2327 -7.1238 15 1 3.6734 0.3771 -8.6268 16 1 1.8197 1.6470 -7.7155 17 6 2.0400 -0.7213 1.2492 18 6 1.6394 -2.1965 1.1855 19 6 1.4263 -0.0793 2.4950 20 6 3.5416 -0.6109 1.3150 21 6 4.2427 -1.2949 2.2905 22 6 5.6200 -1.1933 2.3513 23 6 6.2961 -0.4081 1.4363 24 6 5.5946 0.2797 0.4638 25 6 4.2177 0.1745 0.4003 26 1 -0.3634 -1.0229 0.0983 27 1 -0.3632 0.5966 0.8368 28 1 -0.3634 0.4265 -0.9350 29 1 1.4495 -1.4978 -1.4101 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1183 32 1 3.9455 -1.7652 -2.4350 33 1 4.3569 -1.6250 -4.1608 34 1 4.6687 -0.2629 -3.0579 35 1 0.6497 -1.2947 -4.1006 36 1 2.0104 -2.2274 -4.7697 37 1 1.5984 -2.3678 -3.0439 38 1 3.7616 -1.6333 -6.9793 39 1 2.0023 -2.7103 2.0757 40 1 0.5533 -2.2763 1.1379 41 1 2.0766 -2.6539 0.2980 42 1 1.7117 0.9716 2.5403 43 1 0.3403 -0.1592 2.4474 44 1 1.7893 -0.5935 3.3849 45 1 3.7144 -1.9081 3.0055 46 1 6.1677 -1.7274 3.1136 47 1 7.3721 -0.3283 1.4841 48 1 6.1225 0.8967 -0.2483 49 1 3.6698 0.7094 -0.3613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414158401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:42 Heat of formation + Delta-G solvation = 2.050820 kcal Electronic energy + Delta-G solvation = -24689.072879 eV Core-core repulsion = 21614.983516 eV Total energy + Delta-G solvation = -3074.089363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00744 -38.82835 -37.47843 -34.70171 -32.78781 -31.58210 -30.91060 -29.16612 -28.02177 -27.47131 -27.21474 -25.96201 -24.53082 -23.23355 -22.26341 -20.36621 -19.53700 -18.07778 -17.69351 -16.79229 -16.13874 -15.95152 -15.81991 -15.72943 -15.03276 -14.86593 -14.60935 -14.28886 -14.17653 -14.04872 -13.85701 -13.26729 -13.19628 -13.07109 -13.01268 -12.97331 -12.69803 -12.58652 -12.51099 -12.37328 -12.15325 -12.10978 -12.02948 -11.95745 -11.73445 -11.38289 -11.19119 -11.16525 -10.75101 -10.57575 -10.32389 -9.60505 -9.37347 -8.94601 -7.95153 -6.11794 0.66954 0.73643 1.42402 1.43299 1.49897 2.46658 3.09796 3.26757 3.47027 3.78016 3.92038 4.25314 4.32478 4.33296 4.40761 4.49625 4.50246 4.54973 4.61296 4.69711 4.76342 4.87083 4.88838 4.91546 4.92731 5.00410 5.05923 5.11898 5.14836 5.20739 5.24112 5.26899 5.31764 5.35012 5.40898 5.47392 5.50710 5.58597 5.63194 5.71275 5.77132 5.80303 5.85304 6.01153 6.23059 6.33565 6.33972 6.41415 6.54056 6.75542 6.98732 7.55580 9.02477 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.004864 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.641533 B = 5755.191996 C = 6576.754299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 H 0.062 0.938 4 N -0.672 5.672 5 C 0.095 3.905 6 C 0.064 3.936 7 C -0.095 4.095 8 C -0.118 4.118 9 C -0.525 4.525 10 H 0.042 0.958 11 C 0.023 3.977 12 N -0.903 5.903 13 Si 0.941 3.059 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.007 4.007 18 C -0.135 4.135 19 C -0.136 4.136 20 C -0.059 4.059 21 C -0.126 4.126 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.108 4.108 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.338 0.662 30 H 0.006 0.994 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.005 0.995 35 H 0.015 0.985 36 H 0.053 0.947 37 H 0.032 0.968 38 H 0.256 0.744 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.130 0.870 48 H 0.111 0.889 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 -0.289 18.847 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.021 4.021 3 H 0.080 0.920 4 N -0.303 5.303 5 C -0.034 4.034 6 C 0.063 3.937 7 C -0.153 4.153 8 C -0.176 4.176 9 C -0.564 4.564 10 H 0.060 0.940 11 C -0.176 4.176 12 N -0.542 5.542 13 Si 0.768 3.232 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.007 4.007 18 C -0.192 4.192 19 C -0.193 4.193 20 C -0.059 4.059 21 C -0.144 4.144 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.126 4.126 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.157 0.843 30 H 0.024 0.976 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.148 0.852 48 H 0.129 0.871 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.567 -0.332 18.857 18.925 hybrid contribution -0.584 0.881 -1.791 2.080 sum -2.151 0.549 17.066 17.210 Atomic orbital electron populations 1.22536 0.96443 1.02890 1.01830 1.21606 0.93053 0.97046 0.90425 0.92024 1.60686 1.56927 1.09427 1.03309 1.21755 0.96647 0.94476 0.90571 1.18088 0.92391 0.92542 0.90656 1.21370 0.97680 0.97837 0.98449 1.21636 0.97184 0.98694 1.00099 1.21413 1.43497 0.95978 0.95489 0.93952 1.25507 0.95201 0.96217 1.00637 1.69964 1.44968 1.15054 1.24215 0.85889 0.78226 0.79433 0.79659 1.20279 1.21149 1.20107 1.19458 0.90236 0.96562 0.94493 1.21865 1.01398 0.94008 1.01974 1.21923 1.01238 1.00226 0.95930 1.19817 0.95498 0.96024 0.94593 1.21179 0.94352 1.00003 0.98887 1.21331 0.94643 0.99355 0.99547 1.21293 1.00356 0.98076 0.95870 1.21311 0.94921 1.00777 0.99093 1.21293 0.94253 0.99061 0.97973 0.91330 0.90480 0.94214 0.84260 0.97569 0.93916 0.95117 0.93781 0.97545 0.96566 0.92841 0.94871 0.93426 0.91708 0.91486 0.93394 0.93230 0.90834 0.91440 0.84667 0.84262 0.85173 0.87119 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.09 8.38 71.98 0.60 -3.48 16 2 C 0.09 2.37 1.21 44.91 0.05 2.42 16 3 H 0.06 1.81 6.53 -2.39 -0.02 1.79 16 4 N -0.67 -22.15 3.51 -491.57 -1.73 -23.88 16 5 C 0.09 3.83 4.09 86.30 0.35 4.18 16 6 C 0.06 3.06 0.57 -52.93 -0.03 3.03 16 7 C -0.10 -4.72 8.09 71.98 0.58 -4.13 16 8 C -0.12 -5.56 7.92 71.98 0.57 -4.99 16 9 C -0.52 -28.48 8.01 25.60 0.21 -28.28 16 10 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 11 C 0.02 1.28 5.15 84.66 0.44 1.71 16 12 N -0.90 -50.93 9.35 21.45 0.20 -50.73 16 13 Si 0.94 43.79 29.54 68.60 2.03 45.82 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 C -0.01 -0.16 0.46 -52.93 -0.02 -0.18 16 18 C -0.14 -2.89 7.60 71.98 0.55 -2.34 16 19 C -0.14 -2.44 7.85 71.98 0.57 -1.87 16 20 C -0.06 -1.59 4.64 -19.87 -0.09 -1.68 16 21 C -0.13 -2.97 8.77 22.27 0.20 -2.77 16 22 C -0.13 -3.02 10.05 22.27 0.22 -2.79 16 23 C -0.14 -3.55 10.05 22.27 0.22 -3.33 16 24 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 25 C -0.11 -3.40 8.51 22.27 0.19 -3.21 16 26 H 0.07 1.43 6.33 -2.39 -0.02 1.42 16 27 H 0.08 1.46 6.68 -2.39 -0.02 1.44 16 28 H 0.04 1.04 7.35 -2.39 -0.02 1.02 16 29 H 0.34 11.15 5.73 -89.70 -0.51 10.64 16 30 H 0.01 0.25 7.36 -2.39 -0.02 0.24 16 31 H 0.04 1.81 6.95 -2.38 -0.02 1.79 16 32 H 0.03 1.40 7.60 -2.38 -0.02 1.39 16 33 H 0.04 2.41 6.07 -2.39 -0.01 2.40 16 34 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 2.83 6.07 -2.39 -0.01 2.82 16 37 H 0.03 1.36 6.57 -2.38 -0.02 1.35 16 38 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.06 1.18 7.07 -2.39 -0.02 1.17 16 40 H 0.07 1.24 6.46 -2.39 -0.02 1.23 16 41 H 0.05 1.25 7.13 -2.39 -0.02 1.23 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 1.13 6.47 -2.39 -0.02 1.11 16 44 H 0.07 1.06 7.78 -2.39 -0.02 1.04 16 45 H 0.14 2.50 7.11 -2.91 -0.02 2.48 16 46 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 47 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 48 H 0.11 3.30 8.06 -2.91 -0.02 3.28 16 49 H 0.11 3.96 4.01 -2.91 -0.01 3.95 16 Total: -1.00 -58.40 359.02 5.73 -52.66 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.41 Total: 27.95 kcal Atomic # 6 Polarization: -56.65 SS G_CDS: 4.83 Total: -51.82 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.53 Total: -74.61 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -58.40 5.73 -52.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414158401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.714 kcal (2) G-P(sol) polarization free energy of solvation -58.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds