Wall clock time and date at job start Tue Mar 31 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47488 * 2 1 4 4 N 1.46908 * 109.47074 * 120.00112 * 2 1 3 5 5 C 1.46895 * 110.99755 * 275.00113 * 4 2 1 6 6 C 1.52998 * 109.47096 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46957 * 299.99713 * 6 5 4 8 8 C 1.53002 * 109.47435 * 59.99186 * 6 5 4 9 9 C 1.50699 * 109.47421 * 180.02562 * 6 5 4 10 10 H 1.08000 * 119.99756 * 359.97438 * 9 6 5 11 11 C 1.37878 * 120.00015 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00135 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 119.99830 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.47132 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47247 * 119.99958 * 13 11 9 16 16 H 1.48501 * 109.47373 * 240.00141 * 13 11 9 17 17 C 1.52999 * 109.47208 * 239.99665 * 2 1 3 18 18 C 1.53001 * 109.46930 * 54.88899 * 17 2 1 19 19 C 1.52996 * 109.47471 * 294.89240 * 17 2 1 20 20 C 1.50698 * 109.47470 * 174.89009 * 17 2 1 21 21 C 1.38236 * 120.00324 * 174.15447 * 20 17 2 22 22 C 1.38232 * 119.99837 * 179.97438 * 21 20 17 23 23 C 1.38234 * 120.00407 * 359.95498 * 22 21 20 24 24 C 1.38238 * 119.99934 * 0.28015 * 23 22 21 25 25 C 1.38237 * 119.99592 * 359.50432 * 24 23 22 26 26 H 1.09001 * 109.47068 * 174.24163 * 1 2 3 27 27 H 1.08996 * 109.47233 * 294.23506 * 1 2 3 28 28 H 1.09001 * 109.47098 * 54.23856 * 1 2 3 29 29 H 1.00897 * 110.99807 * 38.95332 * 4 2 1 30 30 H 1.09001 * 109.46868 * 299.99738 * 5 4 2 31 31 H 1.08997 * 109.47533 * 59.99503 * 5 4 2 32 32 H 1.09005 * 109.47018 * 60.00165 * 7 6 5 33 33 H 1.09004 * 109.47172 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47023 * 300.00280 * 7 6 5 35 35 H 1.09001 * 109.46413 * 60.00640 * 8 6 5 36 36 H 1.08995 * 109.46926 * 179.97438 * 8 6 5 37 37 H 1.08996 * 109.47334 * 300.00468 * 8 6 5 38 38 H 0.96998 * 119.99860 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.47382 * 179.97438 * 18 17 2 40 40 H 1.08996 * 109.47461 * 300.00440 * 18 17 2 41 41 H 1.09001 * 109.47222 * 60.00032 * 18 17 2 42 42 H 1.09001 * 109.47372 * 299.99755 * 19 17 2 43 43 H 1.08998 * 109.47596 * 59.99727 * 19 17 2 44 44 H 1.09008 * 109.47204 * 179.97438 * 19 17 2 45 45 H 1.07996 * 119.99727 * 359.97438 * 21 20 17 46 46 H 1.08000 * 119.99817 * 179.97438 * 22 21 20 47 47 H 1.07998 * 120.00390 * 180.02562 * 23 22 21 48 48 H 1.07992 * 120.00262 * 179.72639 * 24 23 22 49 49 H 1.08000 * 119.99894 * 180.25827 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 2.0824 0.2225 2.3469 6 6 2.5962 -0.5329 3.5742 7 6 1.6471 -1.6893 3.8954 8 6 3.9934 -1.0852 3.2852 9 6 2.6599 0.4056 4.7515 10 1 2.3641 1.4379 4.6358 11 6 3.0960 -0.0534 5.9763 12 7 3.4559 -1.3105 6.1172 13 14 3.1758 1.1102 7.4354 14 1 2.7206 2.4605 7.0172 15 1 2.2965 0.6048 8.5202 16 1 4.5742 1.1905 7.9287 17 6 2.0400 -0.7213 -1.2492 18 6 1.4278 -0.0781 -2.4951 19 6 1.6376 -2.1961 -1.1866 20 6 3.5417 -0.6127 -1.3142 21 6 4.2421 -1.2921 -2.2933 22 6 5.6195 -1.1920 -2.3531 23 6 6.2964 -0.4118 -1.4345 24 6 5.5964 0.2638 -0.4523 25 6 4.2186 0.1672 -0.3952 26 1 -0.3633 -1.0225 -0.1031 27 1 -0.3633 0.4218 0.9371 28 1 -0.3633 0.6006 -0.8339 29 1 1.4495 -1.4979 1.4100 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6163 2.5525 32 1 1.6006 -2.3683 3.0440 33 1 2.0134 -2.2278 4.7695 34 1 0.6517 -1.2959 4.1012 35 1 4.6695 -0.2614 3.0564 36 1 4.3595 -1.6230 4.1597 37 1 3.9468 -1.7642 2.4338 38 1 3.7630 -1.6333 6.9788 39 1 1.7914 -0.5916 -3.3851 40 1 0.3417 -0.1566 -2.4482 41 1 1.7144 0.9726 -2.5398 42 1 2.0737 -2.6544 -0.2990 43 1 0.5515 -2.2748 -1.1397 44 1 2.0006 -2.7099 -2.0769 45 1 3.7132 -1.9011 -3.0114 46 1 6.1668 -1.7231 -3.1178 47 1 7.3725 -0.3332 -1.4815 48 1 6.1256 0.8698 0.2681 49 1 3.6713 0.6983 0.3695 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414158406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:46 Heat of formation + Delta-G solvation = 13.209045 kcal Electronic energy + Delta-G solvation = -24691.020877 eV Core-core repulsion = 21617.415371 eV Total energy + Delta-G solvation = -3073.605506 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92693 -37.52249 -35.93712 -33.17547 -31.08693 -30.51964 -29.71104 -28.03671 -27.06896 -25.52564 -25.19527 -24.62446 -23.16335 -22.17556 -21.15453 -18.61311 -18.37162 -16.86753 -15.85757 -15.23248 -14.82108 -14.69530 -14.60692 -14.30494 -13.89730 -13.68917 -13.32157 -12.94297 -12.93756 -12.58238 -12.25651 -12.11434 -12.06262 -11.85036 -11.74747 -11.47982 -11.18834 -11.12937 -11.03786 -10.95735 -10.72957 -10.62655 -10.54720 -10.29586 -10.11756 -10.04682 -9.97703 -9.34099 -9.00872 -8.58913 -8.52325 -8.32390 -8.25968 -7.57653 -5.89069 -3.99267 1.72764 1.80675 3.30985 3.39585 3.42750 4.16212 4.44808 4.70604 4.78647 4.97779 5.27710 5.30484 5.36502 5.37438 5.44687 5.46680 5.48448 5.57400 5.72695 5.79002 5.87719 5.92099 5.97625 6.01233 6.08544 6.17691 6.21081 6.32846 6.37059 6.41139 6.44743 6.52138 6.60669 6.75410 6.80736 6.91016 6.96607 7.08560 7.12321 7.20211 7.39315 7.44715 7.53341 7.78938 7.79586 7.88138 8.04565 8.24920 8.39013 8.58989 9.02714 9.65776 11.11242 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018361 B = 0.004866 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.625177 B = 5753.201713 C = 6576.042587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.074 0.926 4 N -0.675 5.675 5 C 0.075 3.925 6 C 0.070 3.930 7 C -0.131 4.131 8 C -0.115 4.115 9 C -0.505 4.505 10 H 0.051 0.949 11 C 0.065 3.935 12 N -0.884 5.884 13 Si 0.886 3.114 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.012 4.012 18 C -0.140 4.140 19 C -0.138 4.138 20 C -0.053 4.053 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.085 4.085 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.338 0.662 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.082 0.918 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.071 0.929 37 H 0.021 0.979 38 H 0.257 0.743 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.116 0.884 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 0.190 -16.677 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.092 0.908 4 N -0.307 5.307 5 C -0.053 4.053 6 C 0.070 3.930 7 C -0.189 4.189 8 C -0.173 4.173 9 C -0.544 4.544 10 H 0.069 0.931 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.714 3.286 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.013 4.013 18 C -0.198 4.198 19 C -0.195 4.195 20 C -0.053 4.053 21 C -0.142 4.142 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.103 4.103 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.100 0.900 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.134 0.866 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.893 0.149 -16.681 16.705 hybrid contribution -0.825 0.713 1.171 1.600 sum -1.719 0.862 -15.510 15.629 Atomic orbital electron populations 1.22607 0.97950 1.01971 1.01816 1.21564 0.91923 0.97698 0.91064 0.90800 1.60777 1.56255 1.09949 1.03671 1.22162 0.97626 0.94808 0.90715 1.18070 0.92532 0.92543 0.89868 1.21824 0.97740 0.98799 1.00517 1.21598 0.97575 0.98554 0.99577 1.21150 1.43268 0.95859 0.94073 0.93085 1.24875 0.95304 0.94934 0.98429 1.69848 1.44723 1.13941 1.23777 0.86642 0.77549 0.81322 0.83052 1.20000 1.21225 1.21156 1.19469 0.91099 0.96155 0.94530 1.21950 1.00504 1.00574 0.96733 1.21889 1.00611 0.94712 1.02327 1.19614 0.94536 0.96378 0.94739 1.20880 0.94007 1.00342 0.98952 1.20953 0.94399 1.00011 0.99538 1.21037 0.99294 0.98434 0.96130 1.21185 0.94777 0.99917 0.98084 1.21351 0.93860 0.97735 0.97324 0.92357 0.92580 0.92532 0.84186 0.92853 0.96944 0.97105 0.89955 0.96368 0.96474 0.91017 0.96045 0.93314 0.92756 0.92230 0.92795 0.91169 0.92834 0.93222 0.87011 0.87044 0.87007 0.86583 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 8.37 37.16 0.31 -1.98 16 2 C 0.09 1.22 1.21 -67.71 -0.08 1.13 16 3 H 0.07 1.08 6.55 -51.93 -0.34 0.74 16 4 N -0.68 -11.19 3.50 -106.73 -0.37 -11.56 16 5 C 0.08 1.49 4.08 -3.83 -0.02 1.48 16 6 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 7 C -0.13 -3.06 7.92 37.16 0.29 -2.76 16 8 C -0.12 -2.78 8.10 37.16 0.30 -2.48 16 9 C -0.50 -13.42 8.01 -34.44 -0.28 -13.70 16 10 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 11 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 12 N -0.88 -24.46 9.35 55.43 0.52 -23.94 16 13 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 C -0.01 -0.15 0.46 -155.66 -0.07 -0.22 16 18 C -0.14 -1.48 7.85 37.16 0.29 -1.18 16 19 C -0.14 -1.66 7.61 37.16 0.28 -1.38 16 20 C -0.05 -0.74 4.64 -104.62 -0.49 -1.22 16 21 C -0.12 -1.61 8.76 -39.58 -0.35 -1.96 16 22 C -0.13 -1.67 10.05 -39.59 -0.40 -2.07 16 23 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 24 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 25 C -0.08 -1.32 8.51 -39.58 -0.34 -1.66 16 26 H 0.06 0.69 6.32 -51.93 -0.33 0.36 16 27 H 0.06 0.77 7.34 -51.93 -0.38 0.39 16 28 H 0.06 0.61 6.70 -51.93 -0.35 0.26 16 29 H 0.34 5.73 5.74 -39.29 -0.23 5.50 16 30 H 0.05 1.09 6.94 -51.93 -0.36 0.73 16 31 H 0.01 0.25 7.35 -51.93 -0.38 -0.13 16 32 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 33 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 1.92 6.07 -51.93 -0.32 1.60 16 37 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.05 0.53 7.76 -51.93 -0.40 0.13 16 40 H 0.06 0.57 6.48 -51.93 -0.34 0.23 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.98 7.13 -51.93 -0.37 0.61 16 43 H 0.05 0.59 6.45 -51.93 -0.33 0.25 16 44 H 0.05 0.54 7.09 -51.92 -0.37 0.17 16 45 H 0.11 1.26 7.11 -52.49 -0.37 0.88 16 46 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 49 H 0.13 2.24 3.99 -52.49 -0.21 2.03 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -26.95 358.98 -9.18 -36.13 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -8.20 Total: 7.02 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -1.51 Total: -29.14 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.15 Total: -35.51 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.95 -9.18 -36.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414158406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.337 kcal (2) G-P(sol) polarization free energy of solvation -26.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds