Wall clock time and date at job start Tue Mar 31 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47488 * 2 1 4 4 N 1.46908 * 109.47074 * 120.00112 * 2 1 3 5 5 C 1.46895 * 110.99755 * 275.00113 * 4 2 1 6 6 C 1.52998 * 109.47096 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46957 * 299.99713 * 6 5 4 8 8 C 1.53002 * 109.47435 * 59.99186 * 6 5 4 9 9 C 1.50699 * 109.47421 * 180.02562 * 6 5 4 10 10 H 1.08000 * 119.99756 * 359.97438 * 9 6 5 11 11 C 1.37878 * 120.00015 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00135 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 119.99830 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.47132 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47247 * 119.99958 * 13 11 9 16 16 H 1.48501 * 109.47373 * 240.00141 * 13 11 9 17 17 C 1.52999 * 109.47208 * 239.99665 * 2 1 3 18 18 C 1.53001 * 109.46930 * 54.88899 * 17 2 1 19 19 C 1.52996 * 109.47471 * 294.89240 * 17 2 1 20 20 C 1.50698 * 109.47470 * 174.89009 * 17 2 1 21 21 C 1.38236 * 120.00324 * 174.15447 * 20 17 2 22 22 C 1.38232 * 119.99837 * 179.97438 * 21 20 17 23 23 C 1.38234 * 120.00407 * 359.95498 * 22 21 20 24 24 C 1.38238 * 119.99934 * 0.28015 * 23 22 21 25 25 C 1.38237 * 119.99592 * 359.50432 * 24 23 22 26 26 H 1.09001 * 109.47068 * 174.24163 * 1 2 3 27 27 H 1.08996 * 109.47233 * 294.23506 * 1 2 3 28 28 H 1.09001 * 109.47098 * 54.23856 * 1 2 3 29 29 H 1.00897 * 110.99807 * 38.95332 * 4 2 1 30 30 H 1.09001 * 109.46868 * 299.99738 * 5 4 2 31 31 H 1.08997 * 109.47533 * 59.99503 * 5 4 2 32 32 H 1.09005 * 109.47018 * 60.00165 * 7 6 5 33 33 H 1.09004 * 109.47172 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47023 * 300.00280 * 7 6 5 35 35 H 1.09001 * 109.46413 * 60.00640 * 8 6 5 36 36 H 1.08995 * 109.46926 * 179.97438 * 8 6 5 37 37 H 1.08996 * 109.47334 * 300.00468 * 8 6 5 38 38 H 0.96998 * 119.99860 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.47382 * 179.97438 * 18 17 2 40 40 H 1.08996 * 109.47461 * 300.00440 * 18 17 2 41 41 H 1.09001 * 109.47222 * 60.00032 * 18 17 2 42 42 H 1.09001 * 109.47372 * 299.99755 * 19 17 2 43 43 H 1.08998 * 109.47596 * 59.99727 * 19 17 2 44 44 H 1.09008 * 109.47204 * 179.97438 * 19 17 2 45 45 H 1.07996 * 119.99727 * 359.97438 * 21 20 17 46 46 H 1.08000 * 119.99817 * 179.97438 * 22 21 20 47 47 H 1.07998 * 120.00390 * 180.02562 * 23 22 21 48 48 H 1.07992 * 120.00262 * 179.72639 * 24 23 22 49 49 H 1.08000 * 119.99894 * 180.25827 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 2.0824 0.2225 2.3469 6 6 2.5962 -0.5329 3.5742 7 6 1.6471 -1.6893 3.8954 8 6 3.9934 -1.0852 3.2852 9 6 2.6599 0.4056 4.7515 10 1 2.3641 1.4379 4.6358 11 6 3.0960 -0.0534 5.9763 12 7 3.4559 -1.3105 6.1172 13 14 3.1758 1.1102 7.4354 14 1 2.7206 2.4605 7.0172 15 1 2.2965 0.6048 8.5202 16 1 4.5742 1.1905 7.9287 17 6 2.0400 -0.7213 -1.2492 18 6 1.4278 -0.0781 -2.4951 19 6 1.6376 -2.1961 -1.1866 20 6 3.5417 -0.6127 -1.3142 21 6 4.2421 -1.2921 -2.2933 22 6 5.6195 -1.1920 -2.3531 23 6 6.2964 -0.4118 -1.4345 24 6 5.5964 0.2638 -0.4523 25 6 4.2186 0.1672 -0.3952 26 1 -0.3633 -1.0225 -0.1031 27 1 -0.3633 0.4218 0.9371 28 1 -0.3633 0.6006 -0.8339 29 1 1.4495 -1.4979 1.4100 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6163 2.5525 32 1 1.6006 -2.3683 3.0440 33 1 2.0134 -2.2278 4.7695 34 1 0.6517 -1.2959 4.1012 35 1 4.6695 -0.2614 3.0564 36 1 4.3595 -1.6230 4.1597 37 1 3.9468 -1.7642 2.4338 38 1 3.7630 -1.6333 6.9788 39 1 1.7914 -0.5916 -3.3851 40 1 0.3417 -0.1566 -2.4482 41 1 1.7144 0.9726 -2.5398 42 1 2.0737 -2.6544 -0.2990 43 1 0.5515 -2.2748 -1.1397 44 1 2.0006 -2.7099 -2.0769 45 1 3.7132 -1.9011 -3.0114 46 1 6.1668 -1.7231 -3.1178 47 1 7.3725 -0.3332 -1.4815 48 1 6.1256 0.8698 0.2681 49 1 3.6713 0.6983 0.3695 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414158406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:45 Heat of formation + Delta-G solvation = 1.965741 kcal Electronic energy + Delta-G solvation = -24691.508423 eV Core-core repulsion = 21617.415371 eV Total energy + Delta-G solvation = -3074.093052 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00787 -38.82781 -37.47991 -34.70434 -32.78903 -31.58004 -30.91069 -29.16453 -28.02231 -27.47120 -27.22071 -25.96308 -24.53098 -23.23191 -22.26274 -20.36881 -19.53736 -18.08044 -17.69832 -16.79326 -16.13531 -15.95562 -15.81901 -15.72840 -15.03146 -14.86381 -14.61695 -14.28708 -14.17849 -14.04673 -13.85638 -13.26550 -13.20418 -13.08197 -13.01545 -12.98858 -12.70267 -12.57243 -12.47438 -12.37995 -12.15625 -12.11059 -12.03198 -11.95626 -11.73449 -11.38500 -11.19165 -11.16530 -10.75417 -10.56440 -10.33306 -9.60431 -9.37344 -8.94547 -7.95728 -6.12196 0.67036 0.73727 1.39603 1.43227 1.52171 2.46295 3.09835 3.26392 3.46991 3.78057 3.92098 4.25392 4.32641 4.33319 4.40914 4.49627 4.50289 4.54999 4.61207 4.69726 4.76444 4.87162 4.88905 4.91568 4.92786 5.00441 5.05946 5.11883 5.14835 5.20720 5.24135 5.26961 5.31757 5.35098 5.41053 5.47426 5.50730 5.58624 5.63196 5.71441 5.77202 5.80190 5.85519 6.01273 6.22968 6.33647 6.33832 6.41338 6.54063 6.75548 6.98700 7.55373 9.02275 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018361 B = 0.004866 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.625177 B = 5753.201713 C = 6576.042587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 H 0.061 0.939 4 N -0.672 5.672 5 C 0.094 3.906 6 C 0.063 3.937 7 C -0.118 4.118 8 C -0.096 4.096 9 C -0.522 4.522 10 H 0.042 0.958 11 C 0.023 3.977 12 N -0.903 5.903 13 Si 0.941 3.059 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C -0.007 4.007 18 C -0.136 4.136 19 C -0.135 4.135 20 C -0.059 4.059 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.108 4.108 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.338 0.662 30 H 0.042 0.958 31 H 0.006 0.994 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.015 0.985 35 H 0.006 0.994 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.256 0.744 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.130 0.870 48 H 0.111 0.889 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -0.282 -18.868 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.021 4.021 3 H 0.080 0.920 4 N -0.304 5.304 5 C -0.035 4.035 6 C 0.063 3.937 7 C -0.176 4.176 8 C -0.153 4.153 9 C -0.561 4.561 10 H 0.060 0.940 11 C -0.176 4.176 12 N -0.543 5.543 13 Si 0.768 3.232 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.211 1.211 17 C -0.007 4.007 18 C -0.193 4.193 19 C -0.192 4.192 20 C -0.059 4.059 21 C -0.144 4.144 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.126 4.126 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.157 0.843 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.148 0.852 48 H 0.129 0.871 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.585 -0.318 -18.883 18.952 hybrid contribution -0.574 0.857 1.805 2.079 sum -2.159 0.539 -17.078 17.223 Atomic orbital electron populations 1.22536 0.96439 1.02905 1.01820 1.21606 0.93057 0.97041 0.90421 0.92029 1.60689 1.56924 1.09428 1.03311 1.21754 0.96653 0.94476 0.90572 1.18099 0.92404 0.92553 0.90672 1.21641 0.97193 0.98696 1.00099 1.21368 0.97671 0.97855 0.98446 1.21466 1.43232 0.95999 0.95433 0.93957 1.25507 0.95239 0.96207 1.00653 1.69980 1.45107 1.15054 1.24118 0.85773 0.77388 0.79717 0.80299 1.19723 1.20878 1.21060 1.19457 0.90234 0.96560 0.94494 1.21923 1.01243 1.00223 0.95931 1.21865 1.01395 0.94010 1.01971 1.19820 0.95499 0.96031 0.94588 1.21175 0.94354 1.00039 0.98862 1.21329 0.94639 0.99326 0.99582 1.21292 1.00363 0.98180 0.95769 1.21309 0.94923 1.00854 0.99001 1.21305 0.94232 0.99049 0.98003 0.91316 0.94211 0.90492 0.84258 0.93915 0.97560 0.94872 0.92844 0.96548 0.97516 0.93804 0.95090 0.93446 0.91438 0.90833 0.93240 0.93397 0.91478 0.91713 0.84670 0.84266 0.85177 0.87132 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 2 C 0.09 2.37 1.21 44.91 0.05 2.42 16 3 H 0.06 1.81 6.55 -2.39 -0.02 1.79 16 4 N -0.67 -22.13 3.50 -491.58 -1.72 -23.85 16 5 C 0.09 3.82 4.08 86.30 0.35 4.17 16 6 C 0.06 3.04 0.57 -52.93 -0.03 3.01 16 7 C -0.12 -5.56 7.92 71.98 0.57 -4.99 16 8 C -0.10 -4.71 8.10 71.98 0.58 -4.13 16 9 C -0.52 -28.34 8.01 25.60 0.21 -28.13 16 10 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 11 C 0.02 1.25 5.15 84.66 0.44 1.68 16 12 N -0.90 -50.94 9.35 21.45 0.20 -50.74 16 13 Si 0.94 43.83 29.54 68.60 2.03 45.85 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 C -0.01 -0.16 0.46 -52.93 -0.02 -0.18 16 18 C -0.14 -2.44 7.85 71.98 0.57 -1.87 16 19 C -0.14 -2.88 7.61 71.98 0.55 -2.34 16 20 C -0.06 -1.59 4.64 -19.87 -0.09 -1.68 16 21 C -0.13 -2.97 8.76 22.27 0.20 -2.77 16 22 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 23 C -0.14 -3.56 10.05 22.27 0.22 -3.33 16 24 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 25 C -0.11 -3.40 8.51 22.27 0.19 -3.21 16 26 H 0.07 1.43 6.32 -2.39 -0.02 1.42 16 27 H 0.04 1.04 7.34 -2.39 -0.02 1.02 16 28 H 0.08 1.45 6.70 -2.39 -0.02 1.44 16 29 H 0.34 11.14 5.74 -89.70 -0.51 10.62 16 30 H 0.04 1.81 6.94 -2.39 -0.02 1.79 16 31 H 0.01 0.26 7.35 -2.39 -0.02 0.24 16 32 H 0.03 1.36 6.57 -2.38 -0.02 1.35 16 33 H 0.05 2.83 6.07 -2.38 -0.01 2.82 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.04 2.40 6.07 -2.39 -0.01 2.38 16 37 H 0.03 1.42 7.60 -2.39 -0.02 1.40 16 38 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 39 H 0.07 1.06 7.76 -2.39 -0.02 1.04 16 40 H 0.07 1.13 6.48 -2.39 -0.02 1.11 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 1.24 7.13 -2.39 -0.02 1.23 16 43 H 0.07 1.24 6.45 -2.39 -0.02 1.23 16 44 H 0.06 1.18 7.09 -2.38 -0.02 1.17 16 45 H 0.14 2.50 7.11 -2.91 -0.02 2.48 16 46 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 47 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 48 H 0.11 3.31 8.06 -2.91 -0.02 3.28 16 49 H 0.11 3.97 3.99 -2.91 -0.01 3.96 16 Total: -1.00 -58.47 358.98 5.74 -52.73 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.41 Total: 27.74 kcal Atomic # 6 Polarization: -56.56 SS G_CDS: 4.82 Total: -51.74 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.52 Total: -74.59 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -58.47 5.74 -52.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414158406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.697 kcal (2) G-P(sol) polarization free energy of solvation -58.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds