Wall clock time and date at job start Tue Mar 31 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 C 1.52995 * 109.46763 * 119.99970 * 2 1 3 5 5 H 1.09001 * 109.47360 * 295.26756 * 4 2 1 6 6 C 1.53007 * 109.46983 * 175.27223 * 4 2 1 7 7 C 1.50703 * 109.47300 * 175.00047 * 6 4 2 8 8 C 1.38240 * 119.99836 * 269.72714 * 7 6 4 9 9 C 1.38233 * 119.99427 * 179.76404 * 8 7 6 10 10 C 1.38231 * 120.00364 * 0.50682 * 9 8 7 11 11 C 1.38238 * 119.99960 * 359.74567 * 10 9 8 12 12 C 1.38229 * 119.99998 * 359.97438 * 11 10 9 13 13 N 1.46897 * 109.47583 * 55.27316 * 4 2 1 14 14 C 1.46896 * 111.00032 * 54.62748 * 13 4 2 15 15 C 1.53002 * 109.47490 * 182.41757 * 14 13 4 16 16 C 1.53006 * 109.46937 * 300.00273 * 15 14 13 17 17 C 1.53004 * 109.46861 * 59.99690 * 15 14 13 18 18 C 1.50700 * 109.47432 * 179.97438 * 15 14 13 19 19 H 1.07999 * 119.99577 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99714 * 179.97438 * 18 15 14 21 21 N 1.31510 * 120.00513 * 0.02562 * 20 18 15 22 22 Si 1.86808 * 119.99421 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47376 * 60.00358 * 22 20 18 24 24 H 1.48501 * 109.46744 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47011 * 299.99682 * 22 20 18 26 26 H 1.09002 * 109.46971 * 294.26709 * 1 2 3 27 27 H 1.08997 * 109.46646 * 54.26500 * 1 2 3 28 28 H 1.08995 * 109.47202 * 174.26586 * 1 2 3 29 29 H 1.08999 * 109.47038 * 239.99971 * 2 1 3 30 30 H 1.08994 * 109.47284 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47346 * 300.00122 * 3 2 1 32 32 H 1.09002 * 109.47272 * 59.99517 * 3 2 1 33 33 H 1.09003 * 109.46673 * 295.00119 * 6 4 2 34 34 H 1.08997 * 109.47133 * 54.99773 * 6 4 2 35 35 H 1.08001 * 119.99963 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.99278 * 180.22844 * 9 8 7 37 37 H 1.07998 * 119.99723 * 179.72059 * 10 9 8 38 38 H 1.07997 * 119.99560 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.00211 * 179.97438 * 12 11 10 40 40 H 1.00909 * 110.99784 * 290.67541 * 13 4 2 41 41 H 1.09001 * 109.47267 * 62.41876 * 14 13 4 42 42 H 1.09002 * 109.47207 * 302.41491 * 14 13 4 43 43 H 1.09003 * 109.46997 * 179.97438 * 16 15 14 44 44 H 1.08994 * 109.46703 * 299.99545 * 16 15 14 45 45 H 1.09000 * 109.46795 * 59.99822 * 16 15 14 46 46 H 1.08998 * 109.47363 * 300.00347 * 17 15 14 47 47 H 1.09005 * 109.46785 * 60.00326 * 17 15 14 48 48 H 1.09003 * 109.47067 * 180.02562 * 17 15 14 49 49 H 0.96997 * 120.00687 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7475 -0.1608 2.1372 6 6 3.5654 -0.8251 1.1912 7 6 4.0773 -1.4243 2.4757 8 6 4.4100 -0.6034 3.5371 9 6 4.8750 -1.1535 4.7169 10 6 5.0172 -2.5236 4.8319 11 6 4.6894 -3.3442 3.7688 12 6 4.2190 -2.7946 2.5909 13 7 1.4593 -2.0693 1.3077 14 6 1.7262 -2.8117 0.0686 15 6 1.0564 -4.1853 0.1425 16 6 1.6185 -4.9632 1.3342 17 6 -0.4534 -4.0078 0.3157 18 6 1.3296 -4.9466 -1.1290 19 1 1.9221 -4.4959 -1.9114 20 6 0.8241 -6.2188 -1.2929 21 7 0.1030 -6.7678 -0.3399 22 14 1.1634 -7.1628 -2.8688 23 1 2.6287 -7.3346 -3.0372 24 1 0.5132 -8.4959 -2.7970 25 1 0.6173 -6.4080 -4.0252 26 1 -0.3633 0.4224 0.9369 27 1 -0.3632 0.6002 -0.8342 28 1 -0.3633 -1.0225 -0.1027 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.8547 -1.4596 0.3535 34 1 3.9924 0.1690 1.0585 35 1 4.3035 0.4674 3.4455 36 1 5.1314 -0.5123 5.5473 37 1 5.3847 -2.9530 5.7522 38 1 4.8009 -4.4146 3.8586 39 1 3.9633 -3.4356 1.7602 40 1 0.4694 -2.0287 1.4989 41 1 2.8018 -2.9381 -0.0548 42 1 1.3257 -2.2575 -0.7804 43 1 1.1410 -5.9417 1.3872 44 1 2.6940 -5.0896 1.2108 45 1 1.4204 -4.4123 2.2536 46 1 -0.6514 -3.4570 1.2352 47 1 -0.8538 -3.4536 -0.5332 48 1 -0.9305 -4.9864 0.3689 49 1 -0.2530 -7.6627 -0.4553 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414170707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:59 Heat of formation + Delta-G solvation = 3.316375 kcal Electronic energy + Delta-G solvation = -24559.845680 eV Core-core repulsion = 21485.811196 eV Total energy + Delta-G solvation = -3074.034484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.41729 -37.97449 -35.58074 -32.72937 -32.13148 -30.51016 -30.29562 -27.88104 -26.42589 -25.54986 -25.25335 -24.42613 -22.71954 -22.19450 -20.66026 -19.53048 -17.92153 -16.46240 -16.36999 -15.53026 -14.95949 -14.70649 -14.57182 -14.46553 -13.91243 -13.84177 -13.14078 -12.89072 -12.68503 -12.58752 -12.40031 -12.18902 -12.10297 -11.95310 -11.83729 -11.28707 -11.18662 -11.05671 -11.00611 -10.72998 -10.66011 -10.61525 -10.50078 -10.39724 -10.25128 -10.03906 -9.97772 -9.30798 -9.00706 -8.60184 -8.54195 -8.28551 -8.25886 -7.52927 -5.89144 -3.99487 1.71464 1.79268 3.33067 3.38145 3.40732 4.14460 4.45289 4.80445 4.94219 5.07268 5.17496 5.25229 5.28492 5.33704 5.36239 5.44043 5.60246 5.68667 5.74621 5.85367 5.86440 5.87295 5.95622 6.03362 6.09348 6.19895 6.24552 6.32881 6.40929 6.42955 6.45751 6.53814 6.62993 6.77367 6.77835 6.90482 6.95048 7.06664 7.12922 7.20177 7.38984 7.42706 7.52490 7.77883 7.80142 7.89555 8.06933 8.24544 8.38837 8.58823 9.02201 9.65574 11.11021 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.005478 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.151690 B = 5109.948181 C = 6414.395011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.143 4.143 4 C 0.100 3.900 5 H 0.071 0.929 6 C -0.077 4.077 7 C -0.059 4.059 8 C -0.127 4.127 9 C -0.130 4.130 10 C -0.133 4.133 11 C -0.121 4.121 12 C -0.083 4.083 13 N -0.675 5.675 14 C 0.071 3.929 15 C 0.070 3.930 16 C -0.117 4.117 17 C -0.131 4.131 18 C -0.505 4.505 19 H 0.050 0.950 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.886 3.114 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.280 1.280 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.338 0.662 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.071 0.929 44 H 0.016 0.984 45 H 0.021 0.979 46 H 0.010 0.990 47 H 0.018 0.982 48 H 0.082 0.918 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 13.040 6.108 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.201 4.201 4 C -0.011 4.011 5 H 0.089 0.911 6 C -0.114 4.114 7 C -0.059 4.059 8 C -0.145 4.145 9 C -0.148 4.148 10 C -0.151 4.151 11 C -0.139 4.139 12 C -0.101 4.101 13 N -0.306 5.306 14 C -0.058 4.058 15 C 0.069 3.931 16 C -0.175 4.175 17 C -0.189 4.189 18 C -0.544 4.544 19 H 0.068 0.932 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.714 3.286 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.205 1.205 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.090 0.910 44 H 0.036 0.964 45 H 0.040 0.960 46 H 0.028 0.972 47 H 0.037 0.963 48 H 0.100 0.900 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.011 12.574 6.494 15.375 hybrid contribution -0.510 -0.139 -1.532 1.621 sum 5.501 12.435 4.961 14.474 Atomic orbital electron populations 1.21858 0.95315 1.02434 1.01110 1.21859 0.96130 0.96360 1.00904 1.21842 1.00852 0.96258 1.01168 1.21536 0.93399 0.90399 0.95730 0.91125 1.20755 0.95217 1.00185 0.95286 1.19698 0.97170 0.93669 0.95334 1.20939 1.01008 0.99038 0.93535 1.20955 1.01304 0.95085 0.97470 1.21023 1.01656 0.93809 0.98576 1.21159 0.99444 0.99604 0.93674 1.21229 0.96067 0.94688 0.98128 1.60742 1.19384 1.12998 1.37479 1.22210 0.99704 0.95732 0.88105 1.18075 0.91299 0.89124 0.94568 1.21646 0.97871 1.01834 0.96111 1.21835 0.99648 1.01903 0.95522 1.21069 1.32304 0.99665 1.01388 0.93221 1.24865 0.95128 0.97417 0.96040 1.69819 1.35134 1.15224 1.32120 0.86773 0.78398 0.79169 0.84271 1.20447 1.21417 1.20541 0.93078 0.93077 0.91815 0.90604 0.92637 0.93265 0.93054 0.90724 0.91372 0.87032 0.87044 0.87001 0.86549 0.85230 0.84192 0.92688 0.96327 0.90987 0.96437 0.96038 0.97156 0.96328 0.89977 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.45 37.16 0.31 -1.65 16 2 C -0.13 -1.72 1.90 -90.62 -0.17 -1.89 16 3 C -0.14 -1.54 8.95 37.16 0.33 -1.21 16 4 C 0.10 1.39 2.10 -67.71 -0.14 1.25 16 5 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 6 C -0.08 -1.05 4.59 -27.88 -0.13 -1.17 16 7 C -0.06 -0.85 4.95 -104.62 -0.52 -1.37 16 8 C -0.13 -1.67 9.70 -39.58 -0.38 -2.05 16 9 C -0.13 -1.65 10.05 -39.59 -0.40 -2.04 16 10 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 11 C -0.12 -1.79 10.05 -39.58 -0.40 -2.18 16 12 C -0.08 -1.33 9.31 -39.59 -0.37 -1.70 16 13 N -0.67 -11.26 4.83 -106.73 -0.52 -11.78 16 14 C 0.07 1.38 3.46 -3.83 -0.01 1.36 16 15 C 0.07 1.62 0.57 -155.65 -0.09 1.53 16 16 C -0.12 -2.75 7.98 37.16 0.30 -2.46 16 17 C -0.13 -3.03 7.92 37.16 0.29 -2.73 16 18 C -0.51 -13.28 8.01 -34.44 -0.28 -13.56 16 19 H 0.05 1.31 7.74 -52.49 -0.41 0.90 16 20 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 21 N -0.88 -24.23 9.35 55.43 0.52 -23.72 16 22 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.96 6.42 -51.93 -0.33 0.63 16 29 H 0.08 1.12 6.57 -51.93 -0.34 0.78 16 30 H 0.05 0.56 6.45 -51.93 -0.34 0.23 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.11 6.30 -51.93 -0.33 0.79 16 34 H 0.07 0.80 6.27 -51.93 -0.33 0.47 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.31 6.30 -52.49 -0.33 1.98 16 40 H 0.34 5.80 5.42 -39.29 -0.21 5.58 16 41 H 0.05 1.11 5.76 -51.93 -0.30 0.81 16 42 H 0.02 0.37 5.61 -51.93 -0.29 0.08 16 43 H 0.07 1.89 6.07 -51.93 -0.32 1.58 16 44 H 0.02 0.39 7.26 -51.93 -0.38 0.02 16 45 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 46 H 0.01 0.20 6.52 -51.93 -0.34 -0.14 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 49 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -26.48 363.99 -9.98 -36.46 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.31 Total: 7.91 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -2.14 Total: -30.33 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.00 Total: -35.50 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -26.48 -9.98 -36.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414170707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.779 kcal (2) G-P(sol) polarization free energy of solvation -26.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds