Wall clock time and date at job start Tue Mar 31 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47232 * 2 1 4 4 C 1.52995 * 109.46763 * 119.99970 * 2 1 3 5 5 H 1.09001 * 109.47360 * 295.26756 * 4 2 1 6 6 C 1.53007 * 109.46983 * 175.27223 * 4 2 1 7 7 C 1.50703 * 109.47300 * 175.00047 * 6 4 2 8 8 C 1.38240 * 119.99836 * 269.72714 * 7 6 4 9 9 C 1.38233 * 119.99427 * 179.76404 * 8 7 6 10 10 C 1.38231 * 120.00364 * 0.50682 * 9 8 7 11 11 C 1.38238 * 119.99960 * 359.74567 * 10 9 8 12 12 C 1.38229 * 119.99998 * 359.97438 * 11 10 9 13 13 N 1.46897 * 109.47583 * 55.27316 * 4 2 1 14 14 C 1.46896 * 111.00032 * 54.62748 * 13 4 2 15 15 C 1.53002 * 109.47490 * 182.41757 * 14 13 4 16 16 C 1.53006 * 109.46937 * 300.00273 * 15 14 13 17 17 C 1.53004 * 109.46861 * 59.99690 * 15 14 13 18 18 C 1.50700 * 109.47432 * 179.97438 * 15 14 13 19 19 H 1.07999 * 119.99577 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99714 * 179.97438 * 18 15 14 21 21 N 1.31510 * 120.00513 * 0.02562 * 20 18 15 22 22 Si 1.86808 * 119.99421 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47376 * 60.00358 * 22 20 18 24 24 H 1.48501 * 109.46744 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47011 * 299.99682 * 22 20 18 26 26 H 1.09002 * 109.46971 * 294.26709 * 1 2 3 27 27 H 1.08997 * 109.46646 * 54.26500 * 1 2 3 28 28 H 1.08995 * 109.47202 * 174.26586 * 1 2 3 29 29 H 1.08999 * 109.47038 * 239.99971 * 2 1 3 30 30 H 1.08994 * 109.47284 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47346 * 300.00122 * 3 2 1 32 32 H 1.09002 * 109.47272 * 59.99517 * 3 2 1 33 33 H 1.09003 * 109.46673 * 295.00119 * 6 4 2 34 34 H 1.08997 * 109.47133 * 54.99773 * 6 4 2 35 35 H 1.08001 * 119.99963 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.99278 * 180.22844 * 9 8 7 37 37 H 1.07998 * 119.99723 * 179.72059 * 10 9 8 38 38 H 1.07997 * 119.99560 * 179.97438 * 11 10 9 39 39 H 1.08001 * 120.00211 * 179.97438 * 12 11 10 40 40 H 1.00909 * 110.99784 * 290.67541 * 13 4 2 41 41 H 1.09001 * 109.47267 * 62.41876 * 14 13 4 42 42 H 1.09002 * 109.47207 * 302.41491 * 14 13 4 43 43 H 1.09003 * 109.46997 * 179.97438 * 16 15 14 44 44 H 1.08994 * 109.46703 * 299.99545 * 16 15 14 45 45 H 1.09000 * 109.46795 * 59.99822 * 16 15 14 46 46 H 1.08998 * 109.47363 * 300.00347 * 17 15 14 47 47 H 1.09005 * 109.46785 * 60.00326 * 17 15 14 48 48 H 1.09003 * 109.47067 * 180.02562 * 17 15 14 49 49 H 0.96997 * 120.00687 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7475 -0.1608 2.1372 6 6 3.5654 -0.8251 1.1912 7 6 4.0773 -1.4243 2.4757 8 6 4.4100 -0.6034 3.5371 9 6 4.8750 -1.1535 4.7169 10 6 5.0172 -2.5236 4.8319 11 6 4.6894 -3.3442 3.7688 12 6 4.2190 -2.7946 2.5909 13 7 1.4593 -2.0693 1.3077 14 6 1.7262 -2.8117 0.0686 15 6 1.0564 -4.1853 0.1425 16 6 1.6185 -4.9632 1.3342 17 6 -0.4534 -4.0078 0.3157 18 6 1.3296 -4.9466 -1.1290 19 1 1.9221 -4.4959 -1.9114 20 6 0.8241 -6.2188 -1.2929 21 7 0.1030 -6.7678 -0.3399 22 14 1.1634 -7.1628 -2.8688 23 1 2.6287 -7.3346 -3.0372 24 1 0.5132 -8.4959 -2.7970 25 1 0.6173 -6.4080 -4.0252 26 1 -0.3633 0.4224 0.9369 27 1 -0.3632 0.6002 -0.8342 28 1 -0.3633 -1.0225 -0.1027 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.8547 -1.4596 0.3535 34 1 3.9924 0.1690 1.0585 35 1 4.3035 0.4674 3.4455 36 1 5.1314 -0.5123 5.5473 37 1 5.3847 -2.9530 5.7522 38 1 4.8009 -4.4146 3.8586 39 1 3.9633 -3.4356 1.7602 40 1 0.4694 -2.0287 1.4989 41 1 2.8018 -2.9381 -0.0548 42 1 1.3257 -2.2575 -0.7804 43 1 1.1410 -5.9417 1.3872 44 1 2.6940 -5.0896 1.2108 45 1 1.4204 -4.4123 2.2536 46 1 -0.6514 -3.4570 1.2352 47 1 -0.8538 -3.4536 -0.5332 48 1 -0.9305 -4.9864 0.3689 49 1 -0.2530 -7.6627 -0.4553 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414170707.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:58 Heat of formation + Delta-G solvation = -7.717197 kcal Electronic energy + Delta-G solvation = -24560.324132 eV Core-core repulsion = 21485.811196 eV Total energy + Delta-G solvation = -3074.512936 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.57936 -39.18886 -37.25729 -34.08987 -33.53830 -31.90905 -31.56625 -28.98301 -27.59176 -27.36359 -27.24091 -25.98713 -23.89324 -23.26552 -21.71922 -21.01238 -19.44460 -18.07762 -17.50883 -17.23190 -16.42257 -15.99179 -15.79452 -15.69674 -15.23404 -15.13239 -14.43817 -14.41264 -14.04201 -13.88877 -13.74223 -13.51116 -13.30082 -13.09608 -13.07273 -12.93083 -12.76999 -12.62733 -12.53212 -12.28005 -12.22328 -12.05055 -11.91526 -11.71410 -11.56653 -11.51437 -11.37444 -11.08984 -10.84005 -10.53795 -10.31187 -9.62230 -9.36662 -8.90416 -7.94607 -6.10975 0.65500 0.71830 1.41980 1.43071 1.49376 2.46780 3.07062 3.27334 3.55450 3.85635 4.04894 4.16084 4.22164 4.25435 4.33720 4.42626 4.50670 4.61415 4.67523 4.69721 4.79808 4.82384 4.82795 4.91649 4.93600 4.96038 5.01604 5.07838 5.12738 5.21049 5.23339 5.27236 5.34052 5.36339 5.37378 5.45911 5.48847 5.56094 5.62652 5.72051 5.74572 5.81029 5.82924 5.99218 6.24961 6.33061 6.35947 6.43775 6.55909 6.77422 7.00003 7.56437 9.02877 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013871 B = 0.005478 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.151690 B = 5109.948181 C = 6414.395011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.138 4.138 4 C 0.104 3.896 5 H 0.084 0.916 6 C -0.072 4.072 7 C -0.068 4.068 8 C -0.127 4.127 9 C -0.128 4.128 10 C -0.136 4.136 11 C -0.139 4.139 12 C -0.107 4.107 13 N -0.676 5.676 14 C 0.095 3.905 15 C 0.062 3.938 16 C -0.097 4.097 17 C -0.118 4.118 18 C -0.522 4.522 19 H 0.041 0.959 20 C 0.024 3.976 21 N -0.903 5.903 22 Si 0.938 3.062 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.336 0.664 41 H 0.044 0.956 42 H 0.013 0.987 43 H 0.042 0.958 44 H 0.009 0.991 45 H 0.030 0.970 46 H 0.030 0.970 47 H 0.015 0.985 48 H 0.052 0.948 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 15.583 7.111 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.195 4.195 4 C -0.006 4.006 5 H 0.102 0.898 6 C -0.110 4.110 7 C -0.068 4.068 8 C -0.145 4.145 9 C -0.146 4.146 10 C -0.153 4.153 11 C -0.157 4.157 12 C -0.125 4.125 13 N -0.307 5.307 14 C -0.033 4.033 15 C 0.061 3.939 16 C -0.155 4.155 17 C -0.175 4.175 18 C -0.561 4.561 19 H 0.060 0.940 20 C -0.175 4.175 21 N -0.542 5.542 22 Si 0.766 3.234 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.156 0.844 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.636 15.127 7.495 18.139 hybrid contribution -0.675 -0.906 -1.790 2.117 sum 5.961 14.221 5.704 16.441 Atomic orbital electron populations 1.21826 0.95335 1.01064 1.02210 1.21777 0.96044 0.97784 0.99219 1.21790 1.01317 0.94288 1.02134 1.21596 0.93471 0.88796 0.96748 0.89831 1.20733 0.94951 1.01007 0.94268 1.19806 0.97589 0.93163 0.96265 1.21248 1.00041 1.00220 0.92998 1.21359 0.99908 0.95124 0.98182 1.21314 1.01020 0.94269 0.98740 1.21281 1.00226 1.00025 0.94131 1.21103 0.98131 0.95408 0.97892 1.60658 1.19281 1.14992 1.35747 1.21751 0.98347 0.94016 0.89233 1.18119 0.91759 0.90858 0.93114 1.21412 0.96902 1.00356 0.96803 1.21643 0.99139 1.00342 0.96422 1.21398 1.32073 1.00259 1.02398 0.94043 1.25486 0.95188 0.98289 0.98524 1.69959 1.35675 1.15219 1.33331 0.85928 0.78154 0.78025 0.81338 1.20279 1.21195 1.20166 0.91723 0.92235 0.94366 0.92810 0.91863 0.92686 0.91725 0.92837 0.88838 0.84372 0.83973 0.84760 0.86755 0.88218 0.84407 0.93775 0.96920 0.93879 0.97230 0.95105 0.95070 0.96615 0.92920 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.45 71.98 0.61 -3.01 16 2 C -0.13 -3.12 1.90 -10.79 -0.02 -3.14 16 3 C -0.14 -2.53 8.95 71.98 0.64 -1.88 16 4 C 0.10 2.73 2.10 44.92 0.09 2.82 16 5 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 6 C -0.07 -1.86 4.59 29.85 0.14 -1.73 16 7 C -0.07 -1.90 4.95 -19.86 -0.10 -1.99 16 8 C -0.13 -2.94 9.70 22.27 0.22 -2.73 16 9 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 10 C -0.14 -3.31 10.05 22.27 0.22 -3.08 16 11 C -0.14 -4.10 10.05 22.27 0.22 -3.87 16 12 C -0.11 -3.48 9.31 22.27 0.21 -3.27 16 13 N -0.68 -22.37 4.83 -491.57 -2.38 -24.75 16 14 C 0.10 3.80 3.46 86.30 0.30 4.09 16 15 C 0.06 2.95 0.57 -52.92 -0.03 2.92 16 16 C -0.10 -4.72 7.98 71.98 0.57 -4.14 16 17 C -0.12 -5.52 7.92 71.98 0.57 -4.95 16 18 C -0.52 -28.19 8.01 25.60 0.21 -27.98 16 19 H 0.04 2.25 7.74 -2.91 -0.02 2.22 16 20 C 0.02 1.31 5.15 84.66 0.44 1.75 16 21 N -0.90 -50.76 9.35 21.45 0.20 -50.56 16 22 Si 0.94 43.74 29.54 68.60 2.03 45.77 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.13 6.42 -2.39 -0.02 1.11 16 29 H 0.05 1.56 6.57 -2.39 -0.02 1.54 16 30 H 0.06 1.07 6.45 -2.39 -0.02 1.05 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.61 6.30 -2.39 -0.02 1.60 16 34 H 0.09 1.92 6.27 -2.39 -0.01 1.91 16 35 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.11 3.27 8.06 -2.91 -0.02 3.24 16 39 H 0.10 3.78 6.30 -2.91 -0.02 3.76 16 40 H 0.34 11.31 5.42 -89.69 -0.49 10.82 16 41 H 0.04 1.85 5.76 -2.39 -0.01 1.84 16 42 H 0.01 0.52 5.61 -2.39 -0.01 0.51 16 43 H 0.04 2.33 6.07 -2.39 -0.01 2.32 16 44 H 0.01 0.43 7.26 -2.39 -0.02 0.41 16 45 H 0.03 1.39 7.60 -2.39 -0.02 1.37 16 46 H 0.03 1.29 6.52 -2.39 -0.02 1.27 16 47 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.05 2.79 6.07 -2.39 -0.01 2.78 16 49 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -58.06 363.99 4.79 -53.27 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.43 Total: 29.05 kcal Atomic # 6 Polarization: -57.29 SS G_CDS: 4.51 Total: -52.78 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -2.18 Total: -75.31 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -58.06 4.79 -53.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414170707.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.554 kcal (2) G-P(sol) polarization free energy of solvation -58.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds