Wall clock time and date at job start Tue Mar 31 2020 06:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99799 * 2 1 4 4 H 1.48500 * 109.47341 * 240.00094 * 3 2 1 5 5 H 1.48505 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46696 * 120.00151 * 3 2 1 7 7 C 1.37877 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46936 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47045 * 180.02562 * 10 9 7 12 12 O 1.42110 * 109.46825 * 296.38619 * 11 10 9 13 13 C 1.81400 * 103.00172 * 180.02562 * 11 10 9 14 14 C 1.50692 * 109.47537 * 179.97438 * 13 11 10 15 15 C 1.38258 * 119.99702 * 269.72590 * 14 13 11 16 16 C 1.38217 * 120.06774 * 180.28016 * 15 14 13 17 17 C 1.38239 * 120.04574 * 359.97438 * 16 15 14 18 18 C 1.38407 * 119.98961 * 0.02562 * 17 16 15 19 19 F 1.35097 * 120.03212 * 179.97438 * 18 17 16 20 20 C 1.38285 * 119.99544 * 89.99624 * 14 13 11 21 21 Cl 1.73602 * 120.02176 * 359.74538 * 20 14 13 22 22 H 0.97005 * 120.00471 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47460 * 59.99941 * 9 7 2 24 24 H 1.09001 * 109.47322 * 300.00052 * 9 7 2 25 25 H 1.09003 * 109.47324 * 60.00204 * 10 9 7 26 26 H 1.08995 * 109.47440 * 299.99880 * 10 9 7 27 27 H 1.09001 * 109.47149 * 59.99398 * 13 11 10 28 28 H 1.09006 * 109.47109 * 300.00256 * 13 11 10 29 29 H 1.08003 * 119.96361 * 0.27383 * 15 14 13 30 30 H 1.07996 * 119.98118 * 179.97438 * 16 15 14 31 31 H 1.08003 * 120.00553 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3383 -5.2330 -0.0013 12 8 0.5854 -5.3458 1.1987 13 6 2.6650 -6.4702 -0.0004 14 6 2.0635 -7.8518 -0.0003 15 6 1.7924 -8.4876 1.1971 16 6 1.2460 -9.7572 1.1989 17 6 0.9693 -10.3933 0.0032 18 6 1.2399 -9.7589 -1.1968 19 9 0.9703 -10.3799 -2.3659 20 6 1.7880 -8.4860 -1.1979 21 17 2.1287 -7.6882 -2.7017 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 3.2806 -6.3422 0.8900 28 1 3.2819 -6.3421 -0.8900 29 1 2.0078 -7.9916 2.1320 30 1 1.0352 -10.2527 2.1350 31 1 0.5421 -11.3852 0.0053 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417194543.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:42 Heat of formation + Delta-G solvation = -97.754632 kcal Electronic energy + Delta-G solvation = -17774.725332 eV Core-core repulsion = 14507.949851 eV Total energy + Delta-G solvation = -3266.775481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.00112 -40.32413 -37.56244 -36.79448 -35.74444 -33.91079 -32.89475 -31.48504 -28.50421 -27.27863 -23.86874 -23.56915 -22.64461 -18.86076 -18.66453 -18.21339 -17.78540 -17.47991 -16.89136 -16.58893 -16.25734 -15.87020 -15.66204 -15.29144 -14.90034 -14.60528 -14.23454 -14.05296 -13.84995 -13.45581 -13.22038 -12.91321 -12.71811 -12.64274 -12.57694 -12.54542 -12.01937 -11.95151 -11.84220 -11.54834 -11.05380 -10.59631 -9.90478 -9.77228 -9.10498 -8.21696 -6.35384 -0.22839 -0.08648 0.68847 0.96396 1.40029 1.43177 1.51357 1.72493 2.39944 2.40474 2.76080 2.99296 3.10508 3.43503 3.70156 3.91259 4.10924 4.23197 4.27669 4.35555 4.44580 4.67015 4.81893 4.89507 4.99140 5.11092 5.25944 5.40416 5.48593 5.64770 5.75486 6.15994 6.79121 7.34181 8.89218 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.032469 B = 0.003585 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.166033 B = 7807.439241 C = 8238.156142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.036 3.964 10 C -0.416 4.416 11 S 1.260 4.740 12 O -0.901 6.901 13 C -0.410 4.410 14 C -0.038 4.038 15 C -0.127 4.127 16 C -0.074 4.074 17 C -0.138 4.138 18 C 0.100 3.900 19 F -0.130 7.130 20 C -0.084 4.084 21 Cl -0.039 7.039 22 H 0.266 0.734 23 H 0.022 0.978 24 H -0.022 1.022 25 H 0.067 0.933 26 H 0.139 0.861 27 H 0.109 0.891 28 H 0.156 0.844 29 H 0.135 0.865 30 H 0.172 0.828 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.510 -22.419 -3.985 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.003 4.003 10 C -0.555 4.555 11 S 1.463 4.537 12 O -0.897 6.897 13 C -0.545 4.545 14 C -0.040 4.040 15 C -0.147 4.147 16 C -0.092 4.092 17 C -0.157 4.157 18 C 0.079 3.921 19 F -0.109 7.109 20 C -0.113 4.113 21 Cl -0.010 7.010 22 H 0.074 0.926 23 H 0.040 0.960 24 H -0.004 1.004 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.128 0.872 28 H 0.173 0.827 29 H 0.153 0.847 30 H 0.190 0.810 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.400 -22.392 -4.150 23.194 hybrid contribution 1.433 1.378 1.621 2.565 sum 5.833 -21.014 -2.530 21.955 Atomic orbital electron populations 1.70093 1.07908 1.28117 1.51142 1.26042 0.95811 1.03548 0.94532 0.85454 0.78244 0.77779 0.79303 1.18311 1.20815 1.19674 1.21615 0.93729 0.91684 1.51219 0.91543 1.18651 0.93654 0.92332 0.95635 1.27518 1.08631 1.11936 1.07385 1.70245 0.87178 0.85769 1.10518 1.92989 1.59085 1.84776 1.52807 1.26737 1.13930 1.03305 1.10573 1.18930 0.98814 0.94531 0.91718 1.21397 0.99749 0.96184 0.97329 1.21454 0.94874 0.93440 0.99406 1.21516 1.02011 1.02645 0.89577 1.17561 1.01308 0.90338 0.82844 1.91533 1.91533 1.81822 1.45973 1.20922 1.07437 0.94200 0.88763 1.98388 1.93556 1.79238 1.29845 0.92552 0.95984 1.00399 0.91396 0.84285 0.87210 0.82659 0.84702 0.81035 0.80726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.54 -30.87 9.11 25.60 0.23 -30.63 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.04 1.88 4.98 29.85 0.15 2.03 16 10 C -0.42 -16.16 5.86 71.98 0.42 -15.74 16 11 S 1.26 41.11 13.14 -56.49 -0.74 40.37 16 12 O -0.90 -40.44 18.14 -148.98 -2.70 -43.14 16 13 C -0.41 -9.66 5.65 71.23 0.40 -9.26 16 14 C -0.04 -0.87 5.14 -19.85 -0.10 -0.98 16 15 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 16 C -0.07 -1.14 10.04 22.26 0.22 -0.92 16 17 C -0.14 -2.10 10.03 22.31 0.22 -1.87 16 18 C 0.10 2.00 7.28 22.39 0.16 2.16 16 19 F -0.13 -2.72 16.84 44.97 0.76 -1.96 16 20 C -0.08 -1.86 6.32 22.36 0.14 -1.72 16 21 Cl -0.04 -0.83 26.96 -2.72 -0.07 -0.90 16 22 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 23 H 0.02 1.16 8.14 -2.39 -0.02 1.15 16 24 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 25 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 27 H 0.11 2.48 8.08 -2.39 -0.02 2.46 16 28 H 0.16 2.90 6.91 -2.39 -0.02 2.88 16 29 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -76.23 306.58 3.23 -73.00 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.14 Total: 2.58 kcal Atomic # 6 Polarization: -61.54 SS G_CDS: 2.53 Total: -59.01 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.28 Total: -56.94 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -2.70 Total: -43.14 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.76 Total: -1.96 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 41.11 SS G_CDS: -0.74 Total: 40.37 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.07 Total: -0.90 kcal Total: -76.23 3.23 -73.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417194543.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.751 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds